RNA–Protein interactions for RNA: ENST00000479525.6

ECHDC1-216, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

TSL 5

Gene ECHDC1, Length 1,368 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-216ENST00000479525 L3MBTL2Q969R5 705 aa25.17■■□□□ 1.62
ECHDC1-216ENST00000479525 NUTM2GQ5VZR2 741 aa25.15■■□□□ 1.62
ECHDC1-216ENST00000479525 CCDC9Q9Y3X0 531 aaKnown RBP25.15■■□□□ 1.62
ECHDC1-216ENST00000479525 TRPM1Q7Z4N2 1603 aa25.14■■□□□ 1.62
ECHDC1-216ENST00000479525 ATAD2Q6PL18 1390 aa25.14■■□□□ 1.62
ECHDC1-216ENST00000479525 FAM83GA6ND36 823 aa25.14■■□□□ 1.61
ECHDC1-216ENST00000479525 PHRF1Q9P1Y6 1649 aaKnown RBP25.13■■□□□ 1.61
ECHDC1-216ENST00000479525 COL14A1Q05707 1796 aaKnown RBP25.1■■□□□ 1.61
ECHDC1-216ENST00000479525 CABP2Q9NPB3 220 aa25.08■■□□□ 1.61
ECHDC1-216ENST00000479525 ACEP12821 1306 aa25.08■■□□□ 1.61
ECHDC1-216ENST00000479525 BTG4Q9NY30 223 aa25.07■■□□□ 1.6
ECHDC1-216ENST00000479525 CENPJQ9HC77 1338 aaPredicted RBP25.07■■□□□ 1.6
ECHDC1-216ENST00000479525 SRPK2P78362 688 aaKnown RBP25.06■■□□□ 1.6
ECHDC1-216ENST00000479525 VPS72Q15906 364 aa25.05■■□□□ 1.6
ECHDC1-216ENST00000479525 SEPT12Q8IYM1 358 aa25.05■■□□□ 1.6
ECHDC1-216ENST00000479525 A0A0G2JS52 829 aa25.04■■□□□ 1.6
ECHDC1-216ENST00000479525 MYT1Q01538 1121 aa25.04■■□□□ 1.6
ECHDC1-216ENST00000479525 CHRNA2Q15822 529 aa25.04■■□□□ 1.6
ECHDC1-216ENST00000479525 PPIP5K1Q6PFW1 1433 aa25.03■■□□□ 1.6
ECHDC1-216ENST00000479525 NBPF8Q3BBV2 869 aa25.03■■□□□ 1.6
ECHDC1-216ENST00000479525 CCDC61Q9Y6R9 512 aa25.02■■□□□ 1.6
ECHDC1-216ENST00000479525 POLR3AO14802 1390 aaPredicted RBP25.01■■□□□ 1.59
ECHDC1-216ENST00000479525 ZC3H6P61129 1189 aaKnown RBP25.01■■□□□ 1.59
ECHDC1-216ENST00000479525 KIAA0232Q92628 1395 aa25■■□□□ 1.59
ECHDC1-216ENST00000479525 FAM98CQ17RN3 349 aaKnown RBP25■■□□□ 1.59
ECHDC1-216ENST00000479525 PRDM11Q9NQV5 511 aa25■■□□□ 1.59
ECHDC1-216ENST00000479525 NRKQ7Z2Y5 1582 aa24.99■■□□□ 1.59
ECHDC1-216ENST00000479525 ROCK2O75116 1388 aaKnown RBP24.99■■□□□ 1.59
ECHDC1-216ENST00000479525 PLEKHG3A1L390 1219 aa24.97■■□□□ 1.59
ECHDC1-216ENST00000479525 FAM182BQ5T319 152 aa24.96■■□□□ 1.59
ECHDC1-216ENST00000479525 ABTB2Q8N961 1025 aa24.95■■□□□ 1.59
ECHDC1-216ENST00000479525 STRN4Q9NRL3 753 aa24.95■■□□□ 1.59
ECHDC1-216ENST00000479525 CABP1Q9NZU7 370 aa24.94■■□□□ 1.58
ECHDC1-216ENST00000479525 DEFB132Q7Z7B7 95 aa24.93■■□□□ 1.58
ECHDC1-216ENST00000479525 ZBTB7CA1YPR0 619 aa24.92■■□□□ 1.58
ECHDC1-216ENST00000479525 KRT27Q7Z3Y8 459 aa24.92■■□□□ 1.58
ECHDC1-216ENST00000479525 AKAP12Q02952 1782 aa24.9■■□□□ 1.58
ECHDC1-216ENST00000479525 SPATA31A5Q5VU36 1347 aa24.9■■□□□ 1.58
ECHDC1-216ENST00000479525 SPATA31A7Q8IWB4 1347 aa24.9■■□□□ 1.58
ECHDC1-216ENST00000479525 PIK3C2AO00443 1686 aa24.9■■□□□ 1.58
ECHDC1-216ENST00000479525 THSD7AQ9UPZ6 1657 aa24.9■■□□□ 1.58
ECHDC1-216ENST00000479525 ONECUT3O60422 494 aaPredicted RBP24.9■■□□□ 1.58
ECHDC1-216ENST00000479525 USP35Q9P2H5 1018 aa24.9■■□□□ 1.58
ECHDC1-216ENST00000479525 BLMP54132 1417 aaPredicted RBP24.88■■□□□ 1.57
ECHDC1-216ENST00000479525 LMO7Q8WWI1 1683 aa24.88■■□□□ 1.57
ECHDC1-216ENST00000479525 CAMTA1Q9Y6Y1 1673 aa24.88■■□□□ 1.57
ECHDC1-216ENST00000479525 USP6P35125 1406 aa24.87■■□□□ 1.57
ECHDC1-216ENST00000479525 EVC2Q86UK5 1308 aa24.87■■□□□ 1.57
ECHDC1-216ENST00000479525 RGPD5Q99666 1765 aa24.85■■□□□ 1.57
ECHDC1-216ENST00000479525 USP19O94966 1318 aa24.85■■□□□ 1.57
ECHDC1-216ENST00000479525 SPATA31A1Q5TZJ5 1347 aa24.83■■□□□ 1.57
ECHDC1-216ENST00000479525 TONSLQ96HA7 1378 aa24.83■■□□□ 1.57
ECHDC1-216ENST00000479525 SSH2Q76I76 1423 aa24.82■■□□□ 1.56
ECHDC1-216ENST00000479525 GCP02774 474 aa24.82■■□□□ 1.56
ECHDC1-216ENST00000479525 LARP1Q6PKG0 1096 aaKnown RBP24.82■■□□□ 1.56
ECHDC1-216ENST00000479525 NLRP13Q86W25 1043 aa24.82■■□□□ 1.56
ECHDC1-216ENST00000479525 CCDC125Q86Z20 511 aa24.82■■□□□ 1.56
ECHDC1-216ENST00000479525 SOX12O15370 315 aa24.81■■□□□ 1.56
ECHDC1-216ENST00000479525 EVA1CP58658 441 aa24.81■■□□□ 1.56
ECHDC1-216ENST00000479525 NLRP6P59044 892 aa24.81■■□□□ 1.56
ECHDC1-216ENST00000479525 CARD11Q9BXL7 1154 aa24.81■■□□□ 1.56
ECHDC1-216ENST00000479525 SF3B2Q13435 895 aaKnown RBP24.8■■□□□ 1.56
ECHDC1-216ENST00000479525 RGPD1P0DJD0 1748 aa24.8■■□□□ 1.56
ECHDC1-216ENST00000479525 TNS1Q9HBL0 1735 aaKnown RBP24.8■■□□□ 1.56
ECHDC1-216ENST00000479525 ZRANB1Q9UGI0 708 aa24.8■■□□□ 1.56
ECHDC1-216ENST00000479525 TRIM26Q12899 539 aaPredicted RBP24.79■■□□□ 1.56
ECHDC1-216ENST00000479525 SLIT3O75094 1523 aa24.79■■□□□ 1.56
ECHDC1-216ENST00000479525 MON2Q7Z3U7 1717 aa24.78■■□□□ 1.56
ECHDC1-216ENST00000479525 SRCAPQ6ZRS2 3230 aa24.77■■□□□ 1.56
ECHDC1-216ENST00000479525 COL18A1P39060 1754 aa24.76■■□□□ 1.55
ECHDC1-216ENST00000479525 CPDO75976 1380 aa24.76■■□□□ 1.55
ECHDC1-216ENST00000479525 TTC21BQ7Z4L5 1316 aa24.75■■□□□ 1.55
ECHDC1-216ENST00000479525 COL5A2P05997 1499 aaPredicted RBP24.75■■□□□ 1.55
ECHDC1-216ENST00000479525 EN1Q05925 392 aaPredicted RBP24.72■■□□□ 1.55
ECHDC1-216ENST00000479525 KTN1Q86UP2 1357 aaKnown RBP24.72■■□□□ 1.55
ECHDC1-216ENST00000479525 SUGP2Q8IX01 1082 aaKnown RBP eCLIP24.71■■□□□ 1.555e-7■■■□□ 18.9
ECHDC1-216ENST00000479525 WNK3Q9BYP7 1800 aa24.71■■□□□ 1.55
ECHDC1-216ENST00000479525 BRD4O60885 1362 aaPredicted RBP24.7■■□□□ 1.55
ECHDC1-216ENST00000479525 TMC1Q8TDI8 760 aa24.7■■□□□ 1.55
ECHDC1-216ENST00000479525 CPSF1Q10570 1443 aaKnown RBP24.7■■□□□ 1.54
ECHDC1-216ENST00000479525 CD163L1Q9NR16 1453 aa24.7■■□□□ 1.54
ECHDC1-216ENST00000479525 TRIM37O94972 964 aa24.69■■□□□ 1.54
ECHDC1-216ENST00000479525 BAG6P46379 1132 aa24.69■■□□□ 1.54
ECHDC1-216ENST00000479525 AXIN2Q9Y2T1 843 aa24.69■■□□□ 1.54
ECHDC1-216ENST00000479525 PARP4Q9UKK3 1724 aaKnown RBP24.69■■□□□ 1.54
ECHDC1-216ENST00000479525 PSDA5PKW4 1024 aaPredicted RBP24.68■■□□□ 1.54
ECHDC1-216ENST00000479525 TCP11L2Q8N4U5 519 aa24.68■■□□□ 1.54
ECHDC1-216ENST00000479525 LTN1O94822 1766 aa24.67■■□□□ 1.54
ECHDC1-216ENST00000479525 SLC12A5Q9H2X9 1139 aa24.67■■□□□ 1.54
ECHDC1-216ENST00000479525 LRRC37A3O60309 1634 aa24.66■■□□□ 1.54
ECHDC1-216ENST00000479525 NFAT5O94916 1531 aa24.66■■□□□ 1.54
ECHDC1-216ENST00000479525 SBNO2Q9Y2G9 1366 aa24.66■■□□□ 1.54
ECHDC1-216ENST00000479525 ZNF692Q9BU19 519 aaPredicted RBP24.66■■□□□ 1.54
ECHDC1-216ENST00000479525 CRB1P82279 1406 aa24.65■■□□□ 1.54
ECHDC1-216ENST00000479525 PDE3BQ13370 1112 aa24.65■■□□□ 1.54
ECHDC1-216ENST00000479525 BARGINQ6ZT62 677 aa24.65■■□□□ 1.54
ECHDC1-216ENST00000479525 NME9Q86XW9 330 aa24.65■■□□□ 1.54
ECHDC1-216ENST00000479525 AATKQ6ZMQ8 1374 aa24.64■■□□□ 1.54
ECHDC1-216ENST00000479525 EZH2Q15910 746 aaKnown RBP24.64■■□□□ 1.53
ECHDC1-216ENST00000479525 TOM1L2Q6ZVM7 507 aa24.64■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 66.2 ms