RNA–Protein interactions for RNA: ENST00000477561.5

HDAC6-221, Transcript of histone deacetylase 6, humanhuman

TSL 5

Gene HDAC6, Length 764 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-221ENST00000477561 POLR3AO14802 1390 aaPredicted RBP11.74□□□□□ -0.53
HDAC6-221ENST00000477561 BCL9LQ86UU0 1499 aa11.74□□□□□ -0.53
HDAC6-221ENST00000477561 RALGAPBQ86X10 1494 aa11.74□□□□□ -0.53
HDAC6-221ENST00000477561 TOPAZ1Q8N9V7 1692 aa11.74□□□□□ -0.53
HDAC6-221ENST00000477561 FAM83GA6ND36 823 aa11.73□□□□□ -0.53
HDAC6-221ENST00000477561 MARF1Q9Y4F3 1742 aaKnown RBP11.73□□□□□ -0.53
HDAC6-221ENST00000477561 ALS2Q96Q42 1657 aa11.72□□□□□ -0.53
HDAC6-221ENST00000477561 UNC5CLQ8IV45 518 aa11.72□□□□□ -0.53
HDAC6-221ENST00000477561 ABTB2Q8N961 1025 aa11.72□□□□□ -0.53
HDAC6-221ENST00000477561 RGS12O14924 1447 aa11.71□□□□□ -0.53
HDAC6-221ENST00000477561 ATRNO75882 1429 aa11.71□□□□□ -0.53
HDAC6-221ENST00000477561 CCER1Q8TC90 406 aaPredicted RBP11.71□□□□□ -0.53
HDAC6-221ENST00000477561 ABCA3Q99758 1704 aa11.71□□□□□ -0.54
HDAC6-221ENST00000477561 SLIT2O94813 1529 aa11.7□□□□□ -0.54
HDAC6-221ENST00000477561 ZC3H6P61129 1189 aaKnown RBP11.7□□□□□ -0.54
HDAC6-221ENST00000477561 GJD4Q96KN9 370 aaPredicted RBP11.7□□□□□ -0.54
HDAC6-221ENST00000477561 BTG4Q9NY30 223 aa11.7□□□□□ -0.54
HDAC6-221ENST00000477561 CCDC9Q9Y3X0 531 aaKnown RBP11.7□□□□□ -0.54
HDAC6-221ENST00000477561 CDK12Q9NYV4 1490 aaPredicted RBP11.7□□□□□ -0.54
HDAC6-221ENST00000477561 ST20-MTHFSA0A0A6YYL1 179 aa11.69□□□□□ -0.54
HDAC6-221ENST00000477561 CHRNA2Q15822 529 aa11.69□□□□□ -0.54
HDAC6-221ENST00000477561 TMC1Q8TDI8 760 aa11.68□□□□□ -0.54
HDAC6-221ENST00000477561 PRDM11Q9NQV5 511 aa11.68□□□□□ -0.54
HDAC6-221ENST00000477561 KIAA0232Q92628 1395 aa11.67□□□□□ -0.54
HDAC6-221ENST00000477561 CLSPNQ9HAW4 1339 aa11.67□□□□□ -0.54
HDAC6-221ENST00000477561 ZEB1P37275 1124 aaPredicted RBP11.67□□□□□ -0.54
HDAC6-221ENST00000477561 NLRP6P59044 892 aa11.67□□□□□ -0.54
HDAC6-221ENST00000477561 VPS72Q15906 364 aa11.67□□□□□ -0.54
HDAC6-221ENST00000477561 NLRP13Q86W25 1043 aa11.67□□□□□ -0.54
HDAC6-221ENST00000477561 UPF1Q92900 1129 aaKnown RBP eCLIP11.67□□□□□ -0.54
HDAC6-221ENST00000477561 PLCH1Q4KWH8 1693 aa11.67□□□□□ -0.54
HDAC6-221ENST00000477561 USP6P35125 1406 aa11.67□□□□□ -0.54
HDAC6-221ENST00000477561 ATAD2Q6PL18 1390 aa11.67□□□□□ -0.54
HDAC6-221ENST00000477561 SBNO2Q9Y2G9 1366 aa11.67□□□□□ -0.54
HDAC6-221ENST00000477561 ZBTB7CA1YPR0 619 aa11.66□□□□□ -0.54
HDAC6-221ENST00000477561 PPP4R3CPQ6ZMV5 832 aa11.66□□□□□ -0.54
HDAC6-221ENST00000477561 TESK2Q96S53 571 aa11.66□□□□□ -0.54
HDAC6-221ENST00000477561 CRYBG1Q9Y4K1 1723 aa11.66□□□□□ -0.54
HDAC6-221ENST00000477561 ZNF692Q9BU19 519 aaPredicted RBP11.65□□□□□ -0.54
HDAC6-221ENST00000477561 SLC12A5Q9H2X9 1139 aa11.65□□□□□ -0.54
HDAC6-221ENST00000477561 TIMELESSQ9UNS1 1208 aa11.65□□□□□ -0.54
HDAC6-221ENST00000477561 GLI3P10071 1580 aa11.65□□□□□ -0.54
HDAC6-221ENST00000477561 KTN1Q86UP2 1357 aaKnown RBP11.65□□□□□ -0.55
HDAC6-221ENST00000477561 PHRF1Q9P1Y6 1649 aaKnown RBP11.64□□□□□ -0.55
HDAC6-221ENST00000477561 TTC21BQ7Z4L5 1316 aa11.64□□□□□ -0.55
HDAC6-221ENST00000477561 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.64□□□□□ -0.55
HDAC6-221ENST00000477561 SSH2Q76I76 1423 aa11.64□□□□□ -0.55
HDAC6-221ENST00000477561 GCP02774 474 aa11.64□□□□□ -0.55
HDAC6-221ENST00000477561 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.64□□□□□ -0.55
HDAC6-221ENST00000477561 STRN4Q9NRL3 753 aa11.64□□□□□ -0.55
HDAC6-221ENST00000477561 BRD4O60885 1362 aaPredicted RBP11.64□□□□□ -0.55
HDAC6-221ENST00000477561 USP47Q96K76 1375 aa11.64□□□□□ -0.55
HDAC6-221ENST00000477561 COL14A1Q05707 1796 aaKnown RBP11.64□□□□□ -0.55
HDAC6-221ENST00000477561 NWD2Q9ULI1 1742 aa11.63□□□□□ -0.55
HDAC6-221ENST00000477561 USP19O94966 1318 aa11.63□□□□□ -0.55
HDAC6-221ENST00000477561 CPSF1Q10570 1443 aaKnown RBP11.63□□□□□ -0.55
HDAC6-221ENST00000477561 A0A0G2JS52 829 aa11.63□□□□□ -0.55
HDAC6-221ENST00000477561 SOX12O15370 315 aa11.63□□□□□ -0.55
HDAC6-221ENST00000477561 MYT1Q01538 1121 aa11.63□□□□□ -0.55
HDAC6-221ENST00000477561 SEPT12Q8IYM1 358 aa11.63□□□□□ -0.55
HDAC6-221ENST00000477561 EVA1CP58658 441 aa11.62□□□□□ -0.55
HDAC6-221ENST00000477561 FAM98CQ17RN3 349 aaKnown RBP11.62□□□□□ -0.55
HDAC6-221ENST00000477561 HDGFL2Q7Z4V5 671 aaPredicted RBP11.62□□□□□ -0.55
HDAC6-221ENST00000477561 ZRANB1Q9UGI0 708 aa11.62□□□□□ -0.55
HDAC6-221ENST00000477561 NRKQ7Z2Y5 1582 aa11.62□□□□□ -0.55
HDAC6-221ENST00000477561 NRAPQ86VF7 1730 aa11.61□□□□□ -0.55
HDAC6-221ENST00000477561 USP35Q9P2H5 1018 aa11.61□□□□□ -0.55
HDAC6-221ENST00000477561 AKAP12Q02952 1782 aa11.6□□□□□ -0.55
HDAC6-221ENST00000477561 PIK3C2AO00443 1686 aa11.6□□□□□ -0.55
HDAC6-221ENST00000477561 CD163L1Q9NR16 1453 aa11.6□□□□□ -0.55
HDAC6-221ENST00000477561 TMF1P82094 1093 aa11.6□□□□□ -0.55
HDAC6-221ENST00000477561 NME9Q86XW9 330 aa11.6□□□□□ -0.55
HDAC6-221ENST00000477561 TERF2IPQ9NYB0 399 aa11.6□□□□□ -0.55
HDAC6-221ENST00000477561 SPATA31A5Q5VU36 1347 aa11.6□□□□□ -0.55
HDAC6-221ENST00000477561 SPATA31A7Q8IWB4 1347 aa11.6□□□□□ -0.55
HDAC6-221ENST00000477561 TTC21AQ8NDW8 1320 aa11.6□□□□□ -0.55
HDAC6-221ENST00000477561 CPDO75976 1380 aa11.59□□□□□ -0.55
HDAC6-221ENST00000477561 ONECUT3O60422 494 aaPredicted RBP11.59□□□□□ -0.55
HDAC6-221ENST00000477561 LARP1Q6PKG0 1096 aaKnown RBP11.59□□□□□ -0.55
HDAC6-221ENST00000477561 PUS7Q96PZ0 661 aaKnown RBP11.59□□□□□ -0.55
HDAC6-221ENST00000477561 CAMTA1Q9Y6Y1 1673 aa11.59□□□□□ -0.55
HDAC6-221ENST00000477561 A0A1W2PP64 1363 aa11.58□□□□□ -0.56
HDAC6-221ENST00000477561 SLC24A1O60721 1099 aa11.58□□□□□ -0.56
HDAC6-221ENST00000477561 SPATA31A1Q5TZJ5 1347 aa11.58□□□□□ -0.56
HDAC6-221ENST00000477561 SLIT3O75094 1523 aa11.57□□□□□ -0.56
HDAC6-221ENST00000477561 FAM182BQ5T319 152 aa11.57□□□□□ -0.56
HDAC6-221ENST00000477561 KRT27Q7Z3Y8 459 aa11.57□□□□□ -0.56
HDAC6-221ENST00000477561 KCNH5Q8NCM2 988 aa11.57□□□□□ -0.56
HDAC6-221ENST00000477561 MON2Q7Z3U7 1717 aa11.57□□□□□ -0.56
HDAC6-221ENST00000477561 BRWD3Q6RI45 1802 aa11.56□□□□□ -0.56
HDAC6-221ENST00000477561 ARHGEF25Q86VW2 580 aa11.56□□□□□ -0.56
HDAC6-221ENST00000477561 AXIN2Q9Y2T1 843 aa11.56□□□□□ -0.56
HDAC6-221ENST00000477561 EDC4Q6P2E9 1401 aaKnown RBP11.55□□□□□ -0.56
HDAC6-221ENST00000477561 POLR3GLQ9BT43 218 aa11.55□□□□□ -0.56
HDAC6-221ENST00000477561 LMO7Q8WWI1 1683 aa11.55□□□□□ -0.56
HDAC6-221ENST00000477561 EP400Q96L91 3159 aa11.55□□□□□ -0.56
HDAC6-221ENST00000477561 AATKQ6ZMQ8 1374 aa11.54□□□□□ -0.56
HDAC6-221ENST00000477561 USP31Q70CQ4 1352 aa11.54□□□□□ -0.56
HDAC6-221ENST00000477561 COL5A2P05997 1499 aaPredicted RBP11.54□□□□□ -0.56
HDAC6-221ENST00000477561 NINLQ9Y2I6 1382 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms