RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 TRPC5Q9UL62 973 aaPredicted RBP25.64■■□□□ 1.7
UPF3A-203ENST00000474056 RALGAPBQ86X10 1494 aa25.64■■□□□ 1.69
UPF3A-203ENST00000474056 NWD2Q9ULI1 1742 aa25.63■■□□□ 1.69
UPF3A-203ENST00000474056 PPIP5K1Q6PFW1 1433 aa25.63■■□□□ 1.69
UPF3A-203ENST00000474056 ACEP12821 1306 aa25.63■■□□□ 1.69
UPF3A-203ENST00000474056 PLEKHG3A1L390 1219 aa25.62■■□□□ 1.69
UPF3A-203ENST00000474056 PAK3O75914 559 aaPredicted RBP25.62■■□□□ 1.69
UPF3A-203ENST00000474056 PHRF1Q9P1Y6 1649 aaKnown RBP25.59■■□□□ 1.69
UPF3A-203ENST00000474056 CARD11Q9BXL7 1154 aa25.58■■□□□ 1.69
UPF3A-203ENST00000474056 EVC2Q86UK5 1308 aa25.57■■□□□ 1.68
UPF3A-203ENST00000474056 NRAPQ86VF7 1730 aa25.57■■□□□ 1.68
UPF3A-203ENST00000474056 UNC5CLQ8IV45 518 aa25.56■■□□□ 1.68
UPF3A-203ENST00000474056 GLI3P10071 1580 aa25.56■■□□□ 1.68
UPF3A-203ENST00000474056 COL14A1Q05707 1796 aaKnown RBP25.55■■□□□ 1.68
UPF3A-203ENST00000474056 PCGF6Q9BYE7 350 aa25.53■■□□□ 1.68
UPF3A-203ENST00000474056 AKAP12Q02952 1782 aa25.53■■□□□ 1.68
UPF3A-203ENST00000474056 FAM83GA6ND36 823 aa25.52■■□□□ 1.68
UPF3A-203ENST00000474056 NUTM2GQ5VZR2 741 aa25.52■■□□□ 1.68
UPF3A-203ENST00000474056 CABP1Q9NZU7 370 aa25.52■■□□□ 1.68
UPF3A-203ENST00000474056 GJD4Q96KN9 370 aaPredicted RBP25.51■■□□□ 1.67
UPF3A-203ENST00000474056 SBNO2Q9Y2G9 1366 aa25.51■■□□□ 1.67
UPF3A-203ENST00000474056 NRKQ7Z2Y5 1582 aa25.49■■□□□ 1.67
UPF3A-203ENST00000474056 UPF1Q92900 1129 aaKnown RBP eCLIP25.49■■□□□ 1.67
UPF3A-203ENST00000474056 USP6P35125 1406 aa25.48■■□□□ 1.67
UPF3A-203ENST00000474056 BRWD3Q6RI45 1802 aa25.47■■□□□ 1.67
UPF3A-203ENST00000474056 ABTB2Q8N961 1025 aa25.46■■□□□ 1.67
UPF3A-203ENST00000474056 ATAD2Q6PL18 1390 aa25.45■■□□□ 1.67
UPF3A-203ENST00000474056 VPS72Q15906 364 aa25.45■■□□□ 1.66
UPF3A-203ENST00000474056 PIK3C2AO00443 1686 aa25.45■■□□□ 1.66
UPF3A-203ENST00000474056 BRD4O60885 1362 aaPredicted RBP25.44■■□□□ 1.66
UPF3A-203ENST00000474056 BTG4Q9NY30 223 aa25.44■■□□□ 1.66
UPF3A-203ENST00000474056 KIAA0232Q92628 1395 aa25.44■■□□□ 1.66
UPF3A-203ENST00000474056 PRDM11Q9NQV5 511 aa25.43■■□□□ 1.66
UPF3A-203ENST00000474056 SSH2Q76I76 1423 aa25.43■■□□□ 1.66
UPF3A-203ENST00000474056 MON2Q7Z3U7 1717 aa25.43■■□□□ 1.66
UPF3A-203ENST00000474056 USP19O94966 1318 aa25.42■■□□□ 1.66
UPF3A-203ENST00000474056 CCDC9Q9Y3X0 531 aaKnown RBP25.41■■□□□ 1.66
UPF3A-203ENST00000474056 CLSPNQ9HAW4 1339 aa25.4■■□□□ 1.66
UPF3A-203ENST00000474056 ZC3H6P61129 1189 aaKnown RBP25.4■■□□□ 1.66
UPF3A-203ENST00000474056 CHRNA2Q15822 529 aa25.39■■□□□ 1.66
UPF3A-203ENST00000474056 CPSF1Q10570 1443 aaKnown RBP25.38■■□□□ 1.65
UPF3A-203ENST00000474056 NLRP13Q86W25 1043 aa25.38■■□□□ 1.65
UPF3A-203ENST00000474056 LMO7Q8WWI1 1683 aa25.38■■□□□ 1.65
UPF3A-203ENST00000474056 SLIT3O75094 1523 aa25.37■■□□□ 1.65
UPF3A-203ENST00000474056 ST20-MTHFSA0A0A6YYL1 179 aa25.36■■□□□ 1.65
UPF3A-203ENST00000474056 ZNF692Q9BU19 519 aaPredicted RBP25.36■■□□□ 1.65
UPF3A-203ENST00000474056 TESK2Q96S53 571 aa25.35■■□□□ 1.65
UPF3A-203ENST00000474056 TTC21BQ7Z4L5 1316 aa25.35■■□□□ 1.65
UPF3A-203ENST00000474056 CD163L1Q9NR16 1453 aa25.34■■□□□ 1.65
UPF3A-203ENST00000474056 NLRP6P59044 892 aa25.34■■□□□ 1.65
UPF3A-203ENST00000474056 CPDO75976 1380 aa25.33■■□□□ 1.65
UPF3A-203ENST00000474056 KTN1Q86UP2 1357 aaKnown RBP25.33■■□□□ 1.65
UPF3A-203ENST00000474056 GCP02774 474 aa25.33■■□□□ 1.65
UPF3A-203ENST00000474056 SEPT12Q8IYM1 358 aa25.33■■□□□ 1.65
UPF3A-203ENST00000474056 CAMTA1Q9Y6Y1 1673 aa25.32■■□□□ 1.64
UPF3A-203ENST00000474056 EP400Q96L91 3159 aa25.32■■□□□ 1.64
UPF3A-203ENST00000474056 TIMELESSQ9UNS1 1208 aa25.32■■□□□ 1.64
UPF3A-203ENST00000474056 USP47Q96K76 1375 aa25.31■■□□□ 1.64
UPF3A-203ENST00000474056 ONECUT3O60422 494 aaPredicted RBP25.31■■□□□ 1.64
UPF3A-203ENST00000474056 SPATA31A5Q5VU36 1347 aa25.31■■□□□ 1.64
UPF3A-203ENST00000474056 SPATA31A7Q8IWB4 1347 aa25.31■■□□□ 1.64
UPF3A-203ENST00000474056 TMC1Q8TDI8 760 aa25.3■■□□□ 1.64
UPF3A-203ENST00000474056 STRN4Q9NRL3 753 aa25.3■■□□□ 1.64
UPF3A-203ENST00000474056 TTC21AQ8NDW8 1320 aa25.3■■□□□ 1.64
UPF3A-203ENST00000474056 THSD7AQ9UPZ6 1657 aa25.29■■□□□ 1.64
UPF3A-203ENST00000474056 FAM98CQ17RN3 349 aaKnown RBP25.29■■□□□ 1.64
UPF3A-203ENST00000474056 USP54Q70EL1 1684 aa25.29■■□□□ 1.64
UPF3A-203ENST00000474056 COL18A1P39060 1754 aa25.28■■□□□ 1.64
UPF3A-203ENST00000474056 SLC12A5Q9H2X9 1139 aa25.28■■□□□ 1.64
UPF3A-203ENST00000474056 RGPD5Q99666 1765 aa25.28■■□□□ 1.64
UPF3A-203ENST00000474056 PUS7Q96PZ0 661 aaKnown RBP25.27■■□□□ 1.64
UPF3A-203ENST00000474056 A0A0G2JS52 829 aa25.26■■□□□ 1.63
UPF3A-203ENST00000474056 MYT1Q01538 1121 aa25.26■■□□□ 1.63
UPF3A-203ENST00000474056 CCER1Q8TC90 406 aaPredicted RBP25.26■■□□□ 1.63
UPF3A-203ENST00000474056 SPATA31A1Q5TZJ5 1347 aa25.25■■□□□ 1.63
UPF3A-203ENST00000474056 A0A1W2PP64 1363 aa25.25■■□□□ 1.63
UPF3A-203ENST00000474056 COL5A2P05997 1499 aaPredicted RBP25.24■■□□□ 1.63
UPF3A-203ENST00000474056 ZBTB7CA1YPR0 619 aa25.24■■□□□ 1.63
UPF3A-203ENST00000474056 HDGFL2Q7Z4V5 671 aaPredicted RBP25.24■■□□□ 1.63
UPF3A-203ENST00000474056 NFAT5O94916 1531 aa25.23■■□□□ 1.63
UPF3A-203ENST00000474056 SUGP2Q8IX01 1082 aaKnown RBP eCLIP25.23■■□□□ 1.63
UPF3A-203ENST00000474056 EVA1CP58658 441 aa25.22■■□□□ 1.63
UPF3A-203ENST00000474056 KRT27Q7Z3Y8 459 aa25.22■■□□□ 1.63
UPF3A-203ENST00000474056 ZRANB1Q9UGI0 708 aa25.22■■□□□ 1.63
UPF3A-203ENST00000474056 EDC4Q6P2E9 1401 aaKnown RBP25.21■■□□□ 1.63
UPF3A-203ENST00000474056 SLC24A1O60721 1099 aa25.21■■□□□ 1.63
UPF3A-203ENST00000474056 LARP1Q6PKG0 1096 aaKnown RBP25.21■■□□□ 1.63
UPF3A-203ENST00000474056 AATKQ6ZMQ8 1374 aa25.2■■□□□ 1.63
UPF3A-203ENST00000474056 NINLQ9Y2I6 1382 aa25.2■■□□□ 1.63
UPF3A-203ENST00000474056 SOX12O15370 315 aa25.2■■□□□ 1.62
UPF3A-203ENST00000474056 USP35Q9P2H5 1018 aa25.2■■□□□ 1.62
UPF3A-203ENST00000474056 LTN1O94822 1766 aa25.2■■□□□ 1.62
UPF3A-203ENST00000474056 USP31Q70CQ4 1352 aa25.19■■□□□ 1.62
UPF3A-203ENST00000474056 NME9Q86XW9 330 aa25.19■■□□□ 1.62
UPF3A-203ENST00000474056 TERF2IPQ9NYB0 399 aa25.19■■□□□ 1.62
UPF3A-203ENST00000474056 TMF1P82094 1093 aa25.18■■□□□ 1.62
UPF3A-203ENST00000474056 KCNH5Q8NCM2 988 aa25.18■■□□□ 1.62
UPF3A-203ENST00000474056 BLMP54132 1417 aaPredicted RBP25.16■■□□□ 1.62
UPF3A-203ENST00000474056 ARHGEF25Q86VW2 580 aa25.16■■□□□ 1.62
UPF3A-203ENST00000474056 WNK3Q9BYP7 1800 aa25.16■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 91.5 ms