RNA–Protein interactions for RNA: ENST00000469207.5

HDAC3-204, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 829 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-204ENST00000469207 SF3B2Q13435 895 aaKnown RBP17.94■□□□□ 0.46
HDAC3-204ENST00000469207 CDK19Q9BWU1 502 aa17.94■□□□□ 0.46
HDAC3-204ENST00000469207 NWD2Q9ULI1 1742 aa17.94■□□□□ 0.46
HDAC3-204ENST00000469207 TULP4Q9NRJ4 1543 aa17.93■□□□□ 0.46
HDAC3-204ENST00000469207 HRCP23327 699 aa17.92■□□□□ 0.46
HDAC3-204ENST00000469207 CHRNA2Q15822 529 aa17.92■□□□□ 0.46
HDAC3-204ENST00000469207 NBPF1Q3BBV0 1214 aa17.92■□□□□ 0.46
HDAC3-204ENST00000469207 ALS2Q96Q42 1657 aa17.92■□□□□ 0.46
HDAC3-204ENST00000469207 STAC3Q96MF2 364 aa17.91■□□□□ 0.46
HDAC3-204ENST00000469207 PRDM11Q9NQV5 511 aa17.91■□□□□ 0.46
HDAC3-204ENST00000469207 ZC3H6P61129 1189 aaKnown RBP17.9■□□□□ 0.46
HDAC3-204ENST00000469207 NRAPQ86VF7 1730 aa17.89■□□□□ 0.46
HDAC3-204ENST00000469207 SPATA31A5Q5VU36 1347 aa17.89■□□□□ 0.45
HDAC3-204ENST00000469207 SPATA31A7Q8IWB4 1347 aa17.89■□□□□ 0.45
HDAC3-204ENST00000469207 EIF3AQ14152 1382 aaKnown RBP17.89■□□□□ 0.45
HDAC3-204ENST00000469207 PSDA5PKW4 1024 aaPredicted RBP17.88■□□□□ 0.45
HDAC3-204ENST00000469207 NBPF8Q3BBV2 869 aa17.88■□□□□ 0.45
HDAC3-204ENST00000469207 STRN4Q9NRL3 753 aa17.88■□□□□ 0.45
HDAC3-204ENST00000469207 ACEP12821 1306 aa17.88■□□□□ 0.45
HDAC3-204ENST00000469207 ATP7BP35670 1465 aa17.88■□□□□ 0.45
HDAC3-204ENST00000469207 ARHGEF28Q8N1W1 1705 aaKnown RBP17.87■□□□□ 0.45
HDAC3-204ENST00000469207 COL14A1Q05707 1796 aaKnown RBP17.87■□□□□ 0.45
HDAC3-204ENST00000469207 EN1Q05925 392 aaPredicted RBP17.87■□□□□ 0.45
HDAC3-204ENST00000469207 KIAA0232Q92628 1395 aa17.87■□□□□ 0.45
HDAC3-204ENST00000469207 BAG6P46379 1132 aa17.85■□□□□ 0.45
HDAC3-204ENST00000469207 USP35Q9P2H5 1018 aa17.85■□□□□ 0.45
HDAC3-204ENST00000469207 CRYBG1Q9Y4K1 1723 aa17.85■□□□□ 0.45
HDAC3-204ENST00000469207 CCDC61Q9Y6R9 512 aa17.84■□□□□ 0.45
HDAC3-204ENST00000469207 SPATA31A1Q5TZJ5 1347 aa17.83■□□□□ 0.44
HDAC3-204ENST00000469207 PLEKHG3A1L390 1219 aa17.82■□□□□ 0.44
HDAC3-204ENST00000469207 ABTB2Q8N961 1025 aa17.82■□□□□ 0.44
HDAC3-204ENST00000469207 CABP2Q9NPB3 220 aa17.82■□□□□ 0.44
HDAC3-204ENST00000469207 POLR3AO14802 1390 aaPredicted RBP17.81■□□□□ 0.44
HDAC3-204ENST00000469207 EVA1CP58658 441 aa17.8■□□□□ 0.44
HDAC3-204ENST00000469207 SRPK2P78362 688 aaKnown RBP17.8■□□□□ 0.44
HDAC3-204ENST00000469207 EZH2Q15910 746 aaKnown RBP17.8■□□□□ 0.44
HDAC3-204ENST00000469207 TRIM37O94972 964 aa17.79■□□□□ 0.44
HDAC3-204ENST00000469207 LARP1Q6PKG0 1096 aaKnown RBP17.79■□□□□ 0.44
HDAC3-204ENST00000469207 ITSN1Q15811 1721 aa17.78■□□□□ 0.44
HDAC3-204ENST00000469207 THSD7AQ9UPZ6 1657 aa17.77■□□□□ 0.44
HDAC3-204ENST00000469207 PHRF1Q9P1Y6 1649 aaKnown RBP17.77■□□□□ 0.44
HDAC3-204ENST00000469207 R3HDM1Q15032 1099 aaKnown RBP17.77■□□□□ 0.44
HDAC3-204ENST00000469207 SIN3AQ96ST3 1273 aa17.76■□□□□ 0.43
HDAC3-204ENST00000469207 CABP1Q9NZU7 370 aa17.76■□□□□ 0.43
HDAC3-204ENST00000469207 CAMTA1Q9Y6Y1 1673 aa17.76■□□□□ 0.43
HDAC3-204ENST00000469207 CENPJQ9HC77 1338 aaPredicted RBP17.75■□□□□ 0.43
HDAC3-204ENST00000469207 ZBTB7CA1YPR0 619 aa17.75■□□□□ 0.43
HDAC3-204ENST00000469207 GCP02774 474 aa17.75■□□□□ 0.43
HDAC3-204ENST00000469207 FAM196AQ6ZSG2 479 aa17.75■□□□□ 0.43
HDAC3-204ENST00000469207 L3MBTL2Q969R5 705 aa17.75■□□□□ 0.43
HDAC3-204ENST00000469207 CAMKK2Q96RR4 588 aa17.75■□□□□ 0.43
HDAC3-204ENST00000469207 TOPAZ1Q8N9V7 1692 aa17.74■□□□□ 0.43
HDAC3-204ENST00000469207 PPIP5K1Q6PFW1 1433 aa17.74■□□□□ 0.43
HDAC3-204ENST00000469207 APBA3O96018 575 aa17.74■□□□□ 0.43
HDAC3-204ENST00000469207 SSH2Q76I76 1423 aa17.73■□□□□ 0.43
HDAC3-204ENST00000469207 PDE3BQ13370 1112 aa17.73■□□□□ 0.43
HDAC3-204ENST00000469207 NLRP13Q86W25 1043 aa17.73■□□□□ 0.43
HDAC3-204ENST00000469207 USP19O94966 1318 aa17.72■□□□□ 0.43
HDAC3-204ENST00000469207 KIAA1210Q9ULL0 1709 aa17.72■□□□□ 0.43
HDAC3-204ENST00000469207 BARGINQ6ZT62 677 aa17.72■□□□□ 0.43
HDAC3-204ENST00000469207 RGPD1P0DJD0 1748 aa17.72■□□□□ 0.43
HDAC3-204ENST00000469207 NLRP6P59044 892 aa17.71■□□□□ 0.43
HDAC3-204ENST00000469207 TCP11L2Q8N4U5 519 aa17.71■□□□□ 0.43
HDAC3-204ENST00000469207 NRKQ7Z2Y5 1582 aa17.7■□□□□ 0.42
HDAC3-204ENST00000469207 CPDO75976 1380 aa17.7■□□□□ 0.42
HDAC3-204ENST00000469207 NEUROD1Q13562 356 aa17.7■□□□□ 0.42
HDAC3-204ENST00000469207 TNS1Q9HBL0 1735 aaKnown RBP17.69■□□□□ 0.42
HDAC3-204ENST00000469207 DISP2A7MBM2 1401 aa17.67■□□□□ 0.42
HDAC3-204ENST00000469207 AXIN2Q9Y2T1 843 aa17.67■□□□□ 0.42
HDAC3-204ENST00000469207 LMO7Q8WWI1 1683 aa17.67■□□□□ 0.42
HDAC3-204ENST00000469207 LRP5O75197 1615 aa17.66■□□□□ 0.42
HDAC3-204ENST00000469207 USP6P35125 1406 aa17.65■□□□□ 0.42
HDAC3-204ENST00000469207 QRICH2Q9H0J4 1663 aa17.65■□□□□ 0.42
HDAC3-204ENST00000469207 COL5A2P05997 1499 aaPredicted RBP17.65■□□□□ 0.42
HDAC3-204ENST00000469207 SOX12O15370 315 aa17.65■□□□□ 0.42
HDAC3-204ENST00000469207 PTF1AQ7RTS3 328 aa17.64■□□□□ 0.41
HDAC3-204ENST00000469207 THRAP3Q9Y2W1 955 aaKnown RBP17.64■□□□□ 0.41
HDAC3-204ENST00000469207 EVC2Q86UK5 1308 aa17.63■□□□□ 0.41
HDAC3-204ENST00000469207 TOM1L2Q6ZVM7 507 aa17.62■□□□□ 0.41
HDAC3-204ENST00000469207 TTC21BQ7Z4L5 1316 aa17.61■□□□□ 0.41
HDAC3-204ENST00000469207 AATKQ6ZMQ8 1374 aa17.61■□□□□ 0.41
HDAC3-204ENST00000469207 CRB1P82279 1406 aa17.61■□□□□ 0.41
HDAC3-204ENST00000469207 BRD4O60885 1362 aaPredicted RBP17.59■□□□□ 0.41
HDAC3-204ENST00000469207 ROCK2O75116 1388 aaKnown RBP17.59■□□□□ 0.41
HDAC3-204ENST00000469207 ARHGEF25Q86VW2 580 aa17.59■□□□□ 0.41
HDAC3-204ENST00000469207 SLIT3O75094 1523 aa17.58■□□□□ 0.41
HDAC3-204ENST00000469207 DDB1Q16531 1140 aa17.58■□□□□ 0.4
HDAC3-204ENST00000469207 PIK3C2AO00443 1686 aa17.58■□□□□ 0.4
HDAC3-204ENST00000469207 TRPM1Q7Z4N2 1603 aa17.58■□□□□ 0.4
HDAC3-204ENST00000469207 PARD3Q8TEW0 1356 aa17.57■□□□□ 0.4
HDAC3-204ENST00000469207 NBPF14Q5TI25 921 aa17.57■□□□□ 0.4
HDAC3-204ENST00000469207 MARCH10Q8NA82 808 aaPredicted RBP17.57■□□□□ 0.4
HDAC3-204ENST00000469207 ZNF692Q9BU19 519 aaPredicted RBP17.57■□□□□ 0.4
HDAC3-204ENST00000469207 COL18A1P39060 1754 aa17.57■□□□□ 0.4
HDAC3-204ENST00000469207 PARP4Q9UKK3 1724 aaKnown RBP17.55■□□□□ 0.4
HDAC3-204ENST00000469207 WDR17Q8IZU2 1322 aa17.55■□□□□ 0.4
HDAC3-204ENST00000469207 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.55■□□□□ 0.4
HDAC3-204ENST00000469207 NUP188Q5SRE5 1749 aa17.55■□□□□ 0.4
HDAC3-204ENST00000469207 RREB1Q92766 1687 aa17.55■□□□□ 0.4
HDAC3-204ENST00000469207 CSB-PGBD3P0DP91 1061 aa17.54■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms