RNA–Protein interactions for RNA: ENST00000462553.2

CDC42BPA-210, Transcript of CDC42 binding protein kinase alpha, humanhuman

TSL 5

Gene CDC42BPA, Length 430 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42BPA-210ENST00000462553 SAFB2Q14151 953 aaKnown RBP eCLIP11.73□□□□□ -0.534e-6■■■□□ 17.1
CDC42BPA-210ENST00000462553 CCDC125Q86Z20 511 aa11.73□□□□□ -0.53
CDC42BPA-210ENST00000462553 VPS72Q15906 364 aa11.72□□□□□ -0.53
CDC42BPA-210ENST00000462553 PRR36Q9H6K5 1346 aa11.71□□□□□ -0.53
CDC42BPA-210ENST00000462553 ZRANB1Q9UGI0 708 aa11.71□□□□□ -0.53
CDC42BPA-210ENST00000462553 ATP7BP35670 1465 aa11.7□□□□□ -0.54
CDC42BPA-210ENST00000462553 ONECUT3O60422 494 aaPredicted RBP11.7□□□□□ -0.54
CDC42BPA-210ENST00000462553 PSME1Q06323 249 aa11.7□□□□□ -0.54
CDC42BPA-210ENST00000462553 SEPT12Q8IYM1 358 aa11.7□□□□□ -0.54
CDC42BPA-210ENST00000462553 KIAA1210Q9ULL0 1709 aa11.69□□□□□ -0.54
CDC42BPA-210ENST00000462553 ACIN1Q9UKV3 1341 aaKnown RBP11.69□□□□□ -0.54
CDC42BPA-210ENST00000462553 DEFB132Q7Z7B7 95 aa11.69□□□□□ -0.54
CDC42BPA-210ENST00000462553 PMFBP1Q8TBY8 1022 aa11.69□□□□□ -0.54
CDC42BPA-210ENST00000462553 FAM83GA6ND36 823 aa11.68□□□□□ -0.54
CDC42BPA-210ENST00000462553 PLEKHG5O94827 1062 aa11.68□□□□□ -0.54
CDC42BPA-210ENST00000462553 HIRIP3Q9BW71 556 aaPredicted RBP11.68□□□□□ -0.54
CDC42BPA-210ENST00000462553 EIF3AQ14152 1382 aaKnown RBP11.67□□□□□ -0.54
CDC42BPA-210ENST00000462553 MINK1Q8N4C8 1332 aaPredicted RBP11.67□□□□□ -0.54
CDC42BPA-210ENST00000462553 KCNA4P22459 653 aa11.67□□□□□ -0.54
CDC42BPA-210ENST00000462553 HAP1P54257 671 aaPredicted RBP11.67□□□□□ -0.54
CDC42BPA-210ENST00000462553 POGKQ9P215 609 aa11.67□□□□□ -0.54
CDC42BPA-210ENST00000462553 TRAK1Q9UPV9 953 aa11.67□□□□□ -0.54
CDC42BPA-210ENST00000462553 NRKQ7Z2Y5 1582 aa11.67□□□□□ -0.54
CDC42BPA-210ENST00000462553 HRCP23327 699 aa11.66□□□□□ -0.54
CDC42BPA-210ENST00000462553 LMOD2Q6P5Q4 547 aa11.66□□□□□ -0.54
CDC42BPA-210ENST00000462553 LMO7Q8WWI1 1683 aa11.65□□□□□ -0.54
CDC42BPA-210ENST00000462553 KRT27Q7Z3Y8 459 aa11.65□□□□□ -0.54
CDC42BPA-210ENST00000462553 GPRASP1Q5JY77 1395 aa11.65□□□□□ -0.55
CDC42BPA-210ENST00000462553 WASLO00401 505 aaPredicted RBP11.64□□□□□ -0.55
CDC42BPA-210ENST00000462553 BTG4Q9NY30 223 aa11.64□□□□□ -0.55
CDC42BPA-210ENST00000462553 CCDC9Q9Y3X0 531 aaKnown RBP11.64□□□□□ -0.55
CDC42BPA-210ENST00000462553 RREB1Q92766 1687 aa11.64□□□□□ -0.55
CDC42BPA-210ENST00000462553 DISP2A7MBM2 1401 aa11.63□□□□□ -0.55
CDC42BPA-210ENST00000462553 FAM98CQ17RN3 349 aaKnown RBP11.63□□□□□ -0.55
CDC42BPA-210ENST00000462553 DCAF11Q8TEB1 546 aa11.63□□□□□ -0.55
CDC42BPA-210ENST00000462553 SPATA31A5Q5VU36 1347 aa11.62□□□□□ -0.55
CDC42BPA-210ENST00000462553 SPATA31A7Q8IWB4 1347 aa11.62□□□□□ -0.55
CDC42BPA-210ENST00000462553 NUP188Q5SRE5 1749 aa11.62□□□□□ -0.55
CDC42BPA-210ENST00000462553 QRICH2Q9H0J4 1663 aa11.62□□□□□ -0.55
CDC42BPA-210ENST00000462553 WNK3Q9BYP7 1800 aa11.61□□□□□ -0.55
CDC42BPA-210ENST00000462553 ZNF219Q9P2Y4 722 aaPredicted RBP11.61□□□□□ -0.55
CDC42BPA-210ENST00000462553 KDM2AQ9Y2K7 1162 aa11.61□□□□□ -0.55
CDC42BPA-210ENST00000462553 POLR3AO14802 1390 aaPredicted RBP11.61□□□□□ -0.55
CDC42BPA-210ENST00000462553 KIAA0232Q92628 1395 aa11.61□□□□□ -0.55
CDC42BPA-210ENST00000462553 PARP4Q9UKK3 1724 aaKnown RBP11.6□□□□□ -0.55
CDC42BPA-210ENST00000462553 SF3B2Q13435 895 aaKnown RBP11.6□□□□□ -0.55
CDC42BPA-210ENST00000462553 A0A0G2JS52 829 aa11.59□□□□□ -0.55
CDC42BPA-210ENST00000462553 MYT1Q01538 1121 aa11.59□□□□□ -0.55
CDC42BPA-210ENST00000462553 FAM182BQ5T319 152 aa11.59□□□□□ -0.55
CDC42BPA-210ENST00000462553 NGDNQ8NEJ9 315 aaKnown RBP11.59□□□□□ -0.55
CDC42BPA-210ENST00000462553 CAMTA1Q9Y6Y1 1673 aa11.59□□□□□ -0.55
CDC42BPA-210ENST00000462553 SBF2Q86WG5 1849 aa11.58□□□□□ -0.56
CDC42BPA-210ENST00000462553 BAG6P46379 1132 aa11.58□□□□□ -0.56
CDC42BPA-210ENST00000462553 NUDT16Q96DE0 195 aaKnown RBP11.58□□□□□ -0.56
CDC42BPA-210ENST00000462553 STAC3Q96MF2 364 aa11.58□□□□□ -0.56
CDC42BPA-210ENST00000462553 PRDM11Q9NQV5 511 aa11.58□□□□□ -0.56
CDC42BPA-210ENST00000462553 SPATA31A1Q5TZJ5 1347 aa11.58□□□□□ -0.56
CDC42BPA-210ENST00000462553 PEAK1Q9H792 1746 aa11.57□□□□□ -0.56
CDC42BPA-210ENST00000462553 PIK3C2AO00443 1686 aa11.57□□□□□ -0.56
CDC42BPA-210ENST00000462553 PSDA5PKW4 1024 aaPredicted RBP11.57□□□□□ -0.56
CDC42BPA-210ENST00000462553 PAK3O75914 559 aaPredicted RBP11.57□□□□□ -0.56
CDC42BPA-210ENST00000462553 SSH2Q76I76 1423 aa11.57□□□□□ -0.56
CDC42BPA-210ENST00000462553 COL18A1P39060 1754 aa11.56□□□□□ -0.56
CDC42BPA-210ENST00000462553 EN1Q05925 392 aaPredicted RBP11.56□□□□□ -0.56
CDC42BPA-210ENST00000462553 CHRNA2Q15822 529 aa11.56□□□□□ -0.56
CDC42BPA-210ENST00000462553 RGPD3A6NKT7 1758 aaPredicted RBP11.56□□□□□ -0.56
CDC42BPA-210ENST00000462553 AKAP12Q02952 1782 aa11.56□□□□□ -0.56
CDC42BPA-210ENST00000462553 RGPD4Q7Z3J3 1758 aa11.56□□□□□ -0.56
CDC42BPA-210ENST00000462553 LRRC37A3O60309 1634 aa11.56□□□□□ -0.56
CDC42BPA-210ENST00000462553 USP19O94966 1318 aa11.56□□□□□ -0.56
CDC42BPA-210ENST00000462553 RGPD5Q99666 1765 aa11.55□□□□□ -0.56
CDC42BPA-210ENST00000462553 CDK19Q9BWU1 502 aa11.55□□□□□ -0.56
CDC42BPA-210ENST00000462553 ACEP12821 1306 aa11.55□□□□□ -0.56
CDC42BPA-210ENST00000462553 SLIT3O75094 1523 aa11.55□□□□□ -0.56
CDC42BPA-210ENST00000462553 CPDO75976 1380 aa11.54□□□□□ -0.56
CDC42BPA-210ENST00000462553 TRPM1Q7Z4N2 1603 aa11.54□□□□□ -0.56
CDC42BPA-210ENST00000462553 NUTM2GQ5VZR2 741 aa11.54□□□□□ -0.56
CDC42BPA-210ENST00000462553 COL5A2P05997 1499 aaPredicted RBP11.54□□□□□ -0.56
CDC42BPA-210ENST00000462553 PPIP5K1Q6PFW1 1433 aa11.53□□□□□ -0.56
CDC42BPA-210ENST00000462553 PLEKHG3A1L390 1219 aa11.53□□□□□ -0.56
CDC42BPA-210ENST00000462553 ZC3H6P61129 1189 aaKnown RBP11.53□□□□□ -0.56
CDC42BPA-210ENST00000462553 NBPF1Q3BBV0 1214 aa11.53□□□□□ -0.56
CDC42BPA-210ENST00000462553 NBPF8Q3BBV2 869 aa11.53□□□□□ -0.56
CDC42BPA-210ENST00000462553 TRIM26Q12899 539 aaPredicted RBP11.52□□□□□ -0.57
CDC42BPA-210ENST00000462553 EZH2Q15910 746 aaKnown RBP11.52□□□□□ -0.57
CDC42BPA-210ENST00000462553 CAMKK2Q96RR4 588 aa11.52□□□□□ -0.57
CDC42BPA-210ENST00000462553 STRN4Q9NRL3 753 aa11.52□□□□□ -0.57
CDC42BPA-210ENST00000462553 CCDC61Q9Y6R9 512 aa11.52□□□□□ -0.57
CDC42BPA-210ENST00000462553 ABCB7O75027 752 aa11.51□□□□□ -0.57
CDC42BPA-210ENST00000462553 R3HDM1Q15032 1099 aaKnown RBP11.51□□□□□ -0.57
CDC42BPA-210ENST00000462553 BARGINQ6ZT62 677 aa11.51□□□□□ -0.57
CDC42BPA-210ENST00000462553 PARD3Q8TEW0 1356 aa11.51□□□□□ -0.57
CDC42BPA-210ENST00000462553 TRIM37O94972 964 aa11.5□□□□□ -0.57
CDC42BPA-210ENST00000462553 LARP1Q6PKG0 1096 aaKnown RBP11.5□□□□□ -0.57
CDC42BPA-210ENST00000462553 USP6P35125 1406 aa11.5□□□□□ -0.57
CDC42BPA-210ENST00000462553 UTRNP46939 3433 aa11.5□□□□□ -0.57
CDC42BPA-210ENST00000462553 MON2Q7Z3U7 1717 aa11.49□□□□□ -0.57
CDC42BPA-210ENST00000462553 CASZ1Q86V15 1759 aa11.49□□□□□ -0.57
CDC42BPA-210ENST00000462553 FAM196AQ6ZSG2 479 aa11.49□□□□□ -0.57
CDC42BPA-210ENST00000462553 USP35Q9P2H5 1018 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 104.7 ms