RNA–Protein interactions for RNA: ENST00000460569.1

UPF2-204, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF2, Length 640 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-204ENST00000460569 KRT28Q7Z3Y7 464 aa14.01□□□□□ -0.17
UPF2-204ENST00000460569 PIK3C2AO00443 1686 aa14.01□□□□□ -0.17
UPF2-204ENST00000460569 TNS3Q68CZ2 1445 aa13.99□□□□□ -0.17
UPF2-204ENST00000460569 SSH2Q76I76 1423 aa13.99□□□□□ -0.17
UPF2-204ENST00000460569 BRD4O60885 1362 aaPredicted RBP13.99□□□□□ -0.17
UPF2-204ENST00000460569 ANKRD26Q9UPS8 1709 aa13.99□□□□□ -0.17
UPF2-204ENST00000460569 SOS2Q07890 1332 aaPredicted RBP13.99□□□□□ -0.17
UPF2-204ENST00000460569 PAK3O75914 559 aaPredicted RBP13.99□□□□□ -0.17
UPF2-204ENST00000460569 SBNO1A3KN83 1393 aa13.98□□□□□ -0.17
UPF2-204ENST00000460569 TTC21BQ7Z4L5 1316 aa13.98□□□□□ -0.17
UPF2-204ENST00000460569 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.98□□□□□ -0.17
UPF2-204ENST00000460569 CARD14Q9BXL6 1004 aa13.98□□□□□ -0.17
UPF2-204ENST00000460569 TTC21AQ8NDW8 1320 aa13.97□□□□□ -0.17
UPF2-204ENST00000460569 USP54Q70EL1 1684 aa13.97□□□□□ -0.17
UPF2-204ENST00000460569 MARF1Q9Y4F3 1742 aaKnown RBP13.96□□□□□ -0.17
UPF2-204ENST00000460569 LMOD2Q6P5Q4 547 aa13.96□□□□□ -0.17
UPF2-204ENST00000460569 FBXO41Q8TF61 875 aa13.96□□□□□ -0.17
UPF2-204ENST00000460569 KNSTRNQ9Y448 316 aa13.96□□□□□ -0.17
UPF2-204ENST00000460569 ABCA3Q99758 1704 aa13.95□□□□□ -0.18
UPF2-204ENST00000460569 CGNL1Q0VF96 1302 aa13.95□□□□□ -0.18
UPF2-204ENST00000460569 SPATA31A3Q5VYP0 1347 aa13.95□□□□□ -0.18
UPF2-204ENST00000460569 SHPRHQ149N8 1683 aa13.95□□□□□ -0.18
UPF2-204ENST00000460569 CRYBG1Q9Y4K1 1723 aa13.95□□□□□ -0.18
UPF2-204ENST00000460569 ARHGEF10O15013 1369 aa13.95□□□□□ -0.18
UPF2-204ENST00000460569 COL22A1Q8NFW1 1626 aaPredicted RBP13.94□□□□□ -0.18
UPF2-204ENST00000460569 PHRF1Q9P1Y6 1649 aaKnown RBP13.94□□□□□ -0.18
UPF2-204ENST00000460569 HSPA1LP34931 641 aa13.94□□□□□ -0.18
UPF2-204ENST00000460569 MED1Q15648 1581 aaPredicted RBP13.94□□□□□ -0.18
UPF2-204ENST00000460569 NME9Q86XW9 330 aa13.94□□□□□ -0.18
UPF2-204ENST00000460569 NUTM2GQ5VZR2 741 aa13.93□□□□□ -0.18
UPF2-204ENST00000460569 ABTB2Q8N961 1025 aa13.93□□□□□ -0.18
UPF2-204ENST00000460569 LRRC59Q96AG4 307 aaKnown RBP13.93□□□□□ -0.18
UPF2-204ENST00000460569 PER1O15534 1290 aaPredicted RBP13.92□□□□□ -0.18
UPF2-204ENST00000460569 NSD2O96028 1365 aa13.92□□□□□ -0.18
UPF2-204ENST00000460569 PNPLA6Q8IY17 1366 aa13.92□□□□□ -0.18
UPF2-204ENST00000460569 OVOS2A0A0J9YW53 1432 aa13.91□□□□□ -0.18
UPF2-204ENST00000460569 OVOS2Q6IE36 1432 aa13.91□□□□□ -0.18
UPF2-204ENST00000460569 PLEKHG5O94827 1062 aa13.91□□□□□ -0.18
UPF2-204ENST00000460569 CNGB1Q14028 1251 aaPredicted RBP13.91□□□□□ -0.18
UPF2-204ENST00000460569 GGNBP2Q9H3C7 697 aa13.91□□□□□ -0.18
UPF2-204ENST00000460569 FYB1O15117 783 aa13.9□□□□□ -0.18
UPF2-204ENST00000460569 NLRP6P59044 892 aa13.9□□□□□ -0.18
UPF2-204ENST00000460569 AMER1Q5JTC6 1135 aaPredicted RBP13.9□□□□□ -0.18
UPF2-204ENST00000460569 CC2D1BQ5T0F9 858 aaKnown RBP13.9□□□□□ -0.18
UPF2-204ENST00000460569 ZRANB1Q9UGI0 708 aa13.9□□□□□ -0.18
UPF2-204ENST00000460569 USP31Q70CQ4 1352 aa13.9□□□□□ -0.18
UPF2-204ENST00000460569 SLIT3O75094 1523 aa13.9□□□□□ -0.19
UPF2-204ENST00000460569 JCADQ9P266 1359 aa13.89□□□□□ -0.19
UPF2-204ENST00000460569 NPC1L1Q9UHC9 1359 aa13.89□□□□□ -0.19
UPF2-204ENST00000460569 NLRP13Q86W25 1043 aa13.89□□□□□ -0.19
UPF2-204ENST00000460569 COG3Q96JB2 828 aa13.89□□□□□ -0.19
UPF2-204ENST00000460569 USP19O94966 1318 aa13.88□□□□□ -0.19
UPF2-204ENST00000460569 LTN1O94822 1766 aa13.87□□□□□ -0.19
UPF2-204ENST00000460569 NFAT5O94916 1531 aa13.86□□□□□ -0.19
UPF2-204ENST00000460569 SOX12O15370 315 aa13.86□□□□□ -0.19
UPF2-204ENST00000460569 HAP1P54257 671 aaPredicted RBP13.86□□□□□ -0.19
UPF2-204ENST00000460569 MORC1Q86VD1 984 aa13.86□□□□□ -0.19
UPF2-204ENST00000460569 CABLES1Q8TDN4 633 aa13.86□□□□□ -0.19
UPF2-204ENST00000460569 MAP2P11137 1827 aaKnown RBP13.85□□□□□ -0.19
UPF2-204ENST00000460569 TNNT2P45379 298 aaPredicted RBP13.84□□□□□ -0.19
UPF2-204ENST00000460569 NUTM2BA6NNL0 878 aaPredicted RBP13.83□□□□□ -0.2
UPF2-204ENST00000460569 NUTM2EB1AL46 878 aaPredicted RBP13.83□□□□□ -0.2
UPF2-204ENST00000460569 NUTM2AQ8IVF1 878 aaPredicted RBP13.83□□□□□ -0.2
UPF2-204ENST00000460569 KCNH5Q8NCM2 988 aa13.83□□□□□ -0.2
UPF2-204ENST00000460569 PARD3Q8TEW0 1356 aa13.83□□□□□ -0.2
UPF2-204ENST00000460569 GCP02774 474 aa13.82□□□□□ -0.2
UPF2-204ENST00000460569 DIEXFQ68CQ4 756 aaKnown RBP13.82□□□□□ -0.2
UPF2-204ENST00000460569 SPATA31A6Q5VVP1 1343 aa13.82□□□□□ -0.2
UPF2-204ENST00000460569 LRP6O75581 1613 aa13.82□□□□□ -0.2
UPF2-204ENST00000460569 ZBTB7CA1YPR0 619 aa13.81□□□□□ -0.2
UPF2-204ENST00000460569 PLCH1Q4KWH8 1693 aa13.81□□□□□ -0.2
UPF2-204ENST00000460569 PEAK1Q9H792 1746 aa13.81□□□□□ -0.2
UPF2-204ENST00000460569 ANP32CO43423 234 aa13.8□□□□□ -0.2
UPF2-204ENST00000460569 ZC3H6P61129 1189 aaKnown RBP13.8□□□□□ -0.2
UPF2-204ENST00000460569 COL14A1Q05707 1796 aaKnown RBP13.8□□□□□ -0.2
UPF2-204ENST00000460569 AATKQ6ZMQ8 1374 aa13.8□□□□□ -0.2
UPF2-204ENST00000460569 KIAA0232Q92628 1395 aa13.8□□□□□ -0.2
UPF2-204ENST00000460569 RGPD5Q99666 1765 aa13.79□□□□□ -0.2
UPF2-204ENST00000460569 FBLN1P23142 703 aa13.79□□□□□ -0.2
UPF2-204ENST00000460569 RRS1Q15050 365 aaKnown RBP13.79□□□□□ -0.2
UPF2-204ENST00000460569 RALBP1Q15311 655 aa13.79□□□□□ -0.2
UPF2-204ENST00000460569 PRKRIP1Q9H875 184 aaPredicted RBP13.79□□□□□ -0.2
UPF2-204ENST00000460569 CPDO75976 1380 aa13.79□□□□□ -0.2
UPF2-204ENST00000460569 ADAMTS2O95450 1211 aa13.78□□□□□ -0.2
UPF2-204ENST00000460569 PRDM11Q9NQV5 511 aa13.78□□□□□ -0.2
UPF2-204ENST00000460569 MAP3K19Q56UN5 1328 aa13.78□□□□□ -0.2
UPF2-204ENST00000460569 SMG6Q86US8 1419 aaKnown RBP13.78□□□□□ -0.2
UPF2-204ENST00000460569 ABCC6O95255 1503 aa13.78□□□□□ -0.2
UPF2-204ENST00000460569 LMO7Q8WWI1 1683 aa13.78□□□□□ -0.2
UPF2-204ENST00000460569 COL18A1P39060 1754 aa13.78□□□□□ -0.2
UPF2-204ENST00000460569 ILDR1Q86SU0 546 aaPredicted RBP13.77□□□□□ -0.21
UPF2-204ENST00000460569 EMILIN1Q9Y6C2 1016 aa13.77□□□□□ -0.21
UPF2-204ENST00000460569 NWD2Q9ULI1 1742 aa13.76□□□□□ -0.21
UPF2-204ENST00000460569 CDK12Q9NYV4 1490 aaPredicted RBP13.76□□□□□ -0.21
UPF2-204ENST00000460569 RTL1A6NKG5 1358 aa13.76□□□□□ -0.21
UPF2-204ENST00000460569 MYBBP1AQ9BQG0 1328 aaKnown RBP13.76□□□□□ -0.21
UPF2-204ENST00000460569 PPM1GO15355 546 aaPredicted RBP13.76□□□□□ -0.21
UPF2-204ENST00000460569 PPP2R1AP30153 589 aa13.76□□□□□ -0.21
UPF2-204ENST00000460569 AMPHP49418 695 aa13.76□□□□□ -0.21
UPF2-204ENST00000460569 CHRNA2Q15822 529 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms