RNA–Protein interactions for RNA: ENST00000460408.5

RFC4-211, Transcript of replication factor C subunit 4, humanhuman

TSL 2

Gene RFC4, Length 628 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4-211ENST00000460408 ZSCAN1Q8NBB4 408 aa7.65□□□□□ -1.18
RFC4-211ENST00000460408 ZC3H15Q8WU90 426 aaKnown RBP7.65□□□□□ -1.18
RFC4-211ENST00000460408 ZFP42Q96MM3 310 aa7.65□□□□□ -1.18
RFC4-211ENST00000460408 TLL2Q9Y6L7 1015 aa7.65□□□□□ -1.18
RFC4-211ENST00000460408 MTMR2Q13614 643 aa7.64□□□□□ -1.19
RFC4-211ENST00000460408 VEGFBP49765 207 aa7.63□□□□□ -1.19
RFC4-211ENST00000460408 NNTQ13423 1086 aa7.63□□□□□ -1.19
RFC4-211ENST00000460408 ERBB4Q15303 1308 aa7.62□□□□□ -1.19
RFC4-211ENST00000460408 GJA5P36382 358 aa7.62□□□□□ -1.19
RFC4-211ENST00000460408 AMHR2Q16671 573 aa7.62□□□□□ -1.19
RFC4-211ENST00000460408 MRPL14Q6P1L8 145 aaKnown RBP7.62□□□□□ -1.19
RFC4-211ENST00000460408 TIMP2P16035 220 aa7.61□□□□□ -1.19
RFC4-211ENST00000460408 KLF16Q9BXK1 252 aaPredicted RBP7.61□□□□□ -1.19
RFC4-211ENST00000460408 ZMYND10O75800 440 aa7.6□□□□□ -1.19
RFC4-211ENST00000460408 ADH1CP00326 375 aa7.6□□□□□ -1.19
RFC4-211ENST00000460408 SCARF1Q14162 830 aa7.6□□□□□ -1.19
RFC4-211ENST00000460408 LYPD8Q6UX82 237 aa7.6□□□□□ -1.19
RFC4-211ENST00000460408 BARGINQ6ZT62 677 aa7.6□□□□□ -1.19
RFC4-211ENST00000460408 WDR4P57081 412 aaKnown RBP7.59□□□□□ -1.19
RFC4-211ENST00000460408 TTLL12Q14166 644 aaPredicted RBP7.59□□□□□ -1.19
RFC4-211ENST00000460408 GIGYF2Q6Y7W6 1299 aaKnown RBP7.59□□□□□ -1.19
RFC4-211ENST00000460408 FAM174AQ8TBP5 190 aa7.59□□□□□ -1.19
RFC4-211ENST00000460408 CDK15Q96Q40 435 aa7.59□□□□□ -1.19
RFC4-211ENST00000460408 PURBQ96QR8 312 aaKnown RBP7.59□□□□□ -1.19
RFC4-211ENST00000460408 VSIG8P0DPA2 414 aa7.58□□□□□ -1.2
RFC4-211ENST00000460408 CTHP32929 405 aa7.57□□□□□ -1.2
RFC4-211ENST00000460408 DIXDC1Q155Q3 683 aa7.57□□□□□ -1.2
RFC4-211ENST00000460408 RSBN1LQ6PCB5 846 aaPredicted RBP7.57□□□□□ -1.2
RFC4-211ENST00000460408 BEGAINQ9BUH8 593 aa7.57□□□□□ -1.2
RFC4-211ENST00000460408 F12P00748 615 aaPredicted RBP7.56□□□□□ -1.2
RFC4-211ENST00000460408 FOXJ1Q92949 421 aa7.56□□□□□ -1.2
RFC4-211ENST00000460408 TBC1D2Q9BYX2 928 aa7.56□□□□□ -1.2
RFC4-211ENST00000460408 CFAP99D6REC4 459 aa7.55□□□□□ -1.2
RFC4-211ENST00000460408 SPTLC1O15269 473 aa7.55□□□□□ -1.2
RFC4-211ENST00000460408 PCDHB15Q9Y5E8 787 aa7.55□□□□□ -1.2
RFC4-211ENST00000460408 SOBPA7XYQ1 873 aa7.54□□□□□ -1.2
RFC4-211ENST00000460408 NR5A1Q13285 461 aa7.54□□□□□ -1.2
RFC4-211ENST00000460408 SLC24A3Q9HC58 644 aa7.54□□□□□ -1.2
RFC4-211ENST00000460408 MAP10Q9P2G4 905 aa7.54□□□□□ -1.2
RFC4-211ENST00000460408 ZIC2O95409 532 aaPredicted RBP7.53□□□□□ -1.2
RFC4-211ENST00000460408 HRCP23327 699 aa7.53□□□□□ -1.2
RFC4-211ENST00000460408 PRPF38BQ5VTL8 546 aaKnown RBP7.53□□□□□ -1.2
RFC4-211ENST00000460408 ITPKCQ96DU7 683 aa7.53□□□□□ -1.2
RFC4-211ENST00000460408 ZBTB3Q9H5J0 574 aa7.53□□□□□ -1.2
RFC4-211ENST00000460408 NR3C2P08235 984 aa7.52□□□□□ -1.21
RFC4-211ENST00000460408 GRM5P41594 1212 aa7.52□□□□□ -1.21
RFC4-211ENST00000460408 ARID5BQ14865 1188 aa7.52□□□□□ -1.21
RFC4-211ENST00000460408 C4orf48Q5BLP8 95 aa7.52□□□□□ -1.21
RFC4-211ENST00000460408 ZFAND3Q9H8U3 227 aa7.52□□□□□ -1.21
RFC4-211ENST00000460408 PARP9Q8IXQ6 854 aa7.51□□□□□ -1.21
RFC4-211ENST00000460408 MAN1A2O60476 641 aa7.5□□□□□ -1.21
RFC4-211ENST00000460408 RIC3Q7Z5B4 369 aa7.5□□□□□ -1.21
RFC4-211ENST00000460408 BPHLQ86WA6 291 aaPredicted RBP7.5□□□□□ -1.21
RFC4-211ENST00000460408 PER1O15534 1290 aaPredicted RBP7.49□□□□□ -1.21
RFC4-211ENST00000460408 PPFIA3O75145 1194 aa7.49□□□□□ -1.21
RFC4-211ENST00000460408 BRPF1P55201 1214 aaPredicted RBP7.49□□□□□ -1.21
RFC4-211ENST00000460408 C6orf118Q5T5N4 469 aa7.49□□□□□ -1.21
RFC4-211ENST00000460408 MEIOBQ8N635 442 aa7.49□□□□□ -1.21
RFC4-211ENST00000460408 CABLES1Q8TDN4 633 aa7.49□□□□□ -1.21
RFC4-211ENST00000460408 C1QTNF2Q9BXJ5 285 aa7.49□□□□□ -1.21
RFC4-211ENST00000460408 AGERQ15109 404 aa7.48□□□□□ -1.21
RFC4-211ENST00000460408 LINC00528Q8N1L1 170 aa7.48□□□□□ -1.21
RFC4-211ENST00000460408 TRIM66O15016 1216 aa7.47□□□□□ -1.21
RFC4-211ENST00000460408 UPP2O95045 317 aa7.47□□□□□ -1.21
RFC4-211ENST00000460408 SH3RF1Q7Z6J0 888 aa7.47□□□□□ -1.21
RFC4-211ENST00000460408 ARMC2Q8NEN0 867 aa7.47□□□□□ -1.21
RFC4-211ENST00000460408 MAP4K5Q9Y4K4 846 aa7.47□□□□□ -1.21
RFC4-211ENST00000460408 SOS2Q07890 1332 aaPredicted RBP7.47□□□□□ -1.21
RFC4-211ENST00000460408 BMP2P12643 396 aa7.46□□□□□ -1.22
RFC4-211ENST00000460408 TUSC1Q2TAM9 212 aa7.46□□□□□ -1.22
RFC4-211ENST00000460408 TRMT44Q8IYL2 757 aaKnown RBP7.46□□□□□ -1.22
RFC4-211ENST00000460408 LOC100996750A0A140TA64 210 aa7.45□□□□□ -1.22
RFC4-211ENST00000460408 KCNMA1Q12791 1236 aa7.45□□□□□ -1.22
RFC4-211ENST00000460408 AK7Q96M32 723 aa7.45□□□□□ -1.22
RFC4-211ENST00000460408 KRTAP4-6Q9BYQ5 205 aa7.45□□□□□ -1.22
RFC4-211ENST00000460408 DNMT3LQ9UJW3 386 aa7.45□□□□□ -1.22
RFC4-211ENST00000460408 CSPP1Q1MSJ5 1256 aa7.44□□□□□ -1.22
RFC4-211ENST00000460408 NBPF14Q5TI25 921 aa7.44□□□□□ -1.22
RFC4-211ENST00000460408 SH3BP5LQ7L8J4 393 aa7.44□□□□□ -1.22
RFC4-211ENST00000460408 TSEN34Q9BSV6 310 aaKnown RBP7.44□□□□□ -1.22
RFC4-211ENST00000460408 LIMD1Q9UGP4 676 aa7.44□□□□□ -1.22
RFC4-211ENST00000460408 LILRB3O75022 631 aa7.43□□□□□ -1.22
RFC4-211ENST00000460408 FSHRP23945 695 aa7.43□□□□□ -1.22
RFC4-211ENST00000460408 QPCTQ16769 361 aa7.43□□□□□ -1.22
RFC4-211ENST00000460408 MYSM1Q5VVJ2 828 aa7.43□□□□□ -1.22
RFC4-211ENST00000460408 EMILIN1Q9Y6C2 1016 aa7.43□□□□□ -1.22
RFC4-211ENST00000460408 GSK3AP49840 483 aa7.42□□□□□ -1.22
RFC4-211ENST00000460408 VASH1Q7L8A9 365 aaPredicted RBP7.42□□□□□ -1.22
RFC4-211ENST00000460408 TSC1Q92574 1164 aa7.42□□□□□ -1.22
RFC4-211ENST00000460408 NUTM2BA6NNL0 878 aaPredicted RBP7.41□□□□□ -1.22
RFC4-211ENST00000460408 NUTM2EB1AL46 878 aaPredicted RBP7.41□□□□□ -1.22
RFC4-211ENST00000460408 NEUROD2Q15784 382 aa7.41□□□□□ -1.22
RFC4-211ENST00000460408 ZNF800Q2TB10 664 aaPredicted RBP eCLIP7.41□□□□□ -1.226e-6■■■■□ 22.6
RFC4-211ENST00000460408 NUTM2DQ5VT03 806 aaPredicted RBP7.41□□□□□ -1.22
RFC4-211ENST00000460408 NUTM2AQ8IVF1 878 aaPredicted RBP7.41□□□□□ -1.22
RFC4-211ENST00000460408 CCDC116Q8IYX3 515 aa7.41□□□□□ -1.22
RFC4-211ENST00000460408 KRT76Q01546 638 aa7.4□□□□□ -1.22
RFC4-211ENST00000460408 GPR161Q8N6U8 529 aaKnown RBP7.4□□□□□ -1.22
RFC4-211ENST00000460408 GPKOWQ92917 476 aaPredicted RBP eCLIP7.4□□□□□ -1.227e-6■■■■■ 33.4
RFC4-211ENST00000460408 TTLL8A6PVC2 850 aa7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms