RNA–Protein interactions for RNA: ENST00000456385.5

CLIP4-208, Transcript of CAP-Gly domain containing linker protein family member 4, humanhuman

TSL 2

Gene CLIP4, Length 2,311 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4-208ENST00000456385 BMP2KLQ5H9B9 411 aa12.83□□□□□ -0.36
CLIP4-208ENST00000456385 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.83□□□□□ -0.36
CLIP4-208ENST00000456385 PRDM4Q9UKN5 801 aa12.83□□□□□ -0.36
CLIP4-208ENST00000456385 TRAK1Q9UPV9 953 aa12.83□□□□□ -0.36
CLIP4-208ENST00000456385 SHROOM2Q13796 1616 aa12.83□□□□□ -0.36
CLIP4-208ENST00000456385 CALD1Q05682 793 aaKnown RBP12.82□□□□□ -0.36
CLIP4-208ENST00000456385 ANKRD45Q5TZF3 282 aa12.82□□□□□ -0.36
CLIP4-208ENST00000456385 MCTP1Q6DN14 999 aa12.82□□□□□ -0.36
CLIP4-208ENST00000456385 CAVIN1Q6NZI2 390 aaKnown RBP12.82□□□□□ -0.36
CLIP4-208ENST00000456385 CT47B1P0C2W7 299 aaPredicted RBP12.82□□□□□ -0.36
CLIP4-208ENST00000456385 TRIM35Q9UPQ4 493 aa12.82□□□□□ -0.36
CLIP4-208ENST00000456385 TRAPPC8Q9Y2L5 1435 aa12.81□□□□□ -0.36
CLIP4-208ENST00000456385 PKP1Q13835 747 aa12.81□□□□□ -0.36
CLIP4-208ENST00000456385 ZSCAN23Q3MJ62 389 aa12.81□□□□□ -0.36
CLIP4-208ENST00000456385 RBSNQ9H1K0 784 aa12.81□□□□□ -0.36
CLIP4-208ENST00000456385 C1orf115Q9H7X2 142 aa12.81□□□□□ -0.36
CLIP4-208ENST00000456385 UGGT1Q9NYU2 1555 aa12.81□□□□□ -0.36
CLIP4-208ENST00000456385 CLEC17AQ6ZS10 378 aa12.8□□□□□ -0.36
CLIP4-208ENST00000456385 IBTKQ9P2D0 1353 aaPredicted RBP12.8□□□□□ -0.36
CLIP4-208ENST00000456385 CD109Q6YHK3 1445 aa12.8□□□□□ -0.36
CLIP4-208ENST00000456385 ABCA6Q8N139 1617 aa12.8□□□□□ -0.36
CLIP4-208ENST00000456385 U2SURPO15042 1029 aaKnown RBP12.8□□□□□ -0.36
CLIP4-208ENST00000456385 TMPOP42166 694 aaKnown RBP12.8□□□□□ -0.36
CLIP4-208ENST00000456385 AFAP1Q8N556 730 aa12.8□□□□□ -0.36
CLIP4-208ENST00000456385 NOL7Q9UMY1 257 aaKnown RBP12.8□□□□□ -0.36
CLIP4-208ENST00000456385 ZNF445P59923 1031 aa12.79□□□□□ -0.36
CLIP4-208ENST00000456385 NOS1P29475 1434 aa12.79□□□□□ -0.36
CLIP4-208ENST00000456385 UQCRHLA0A096LP55 91 aa12.79□□□□□ -0.36
CLIP4-208ENST00000456385 UQCRHP07919 91 aa12.79□□□□□ -0.36
CLIP4-208ENST00000456385 PRIM1P49642 420 aaKnown RBP12.79□□□□□ -0.36
CLIP4-208ENST00000456385 TERF1P54274 439 aa12.79□□□□□ -0.36
CLIP4-208ENST00000456385 PLEKHF1Q96S99 279 aa12.79□□□□□ -0.36
CLIP4-208ENST00000456385 AK9Q5TCS8 1911 aa12.79□□□□□ -0.36
CLIP4-208ENST00000456385 LMBRD1Q9NUN5 540 aa12.78□□□□□ -0.36
CLIP4-208ENST00000456385 RBM27Q9P2N5 1060 aaKnown RBP12.78□□□□□ -0.36
CLIP4-208ENST00000456385 KIAA1210Q9ULL0 1709 aa12.78□□□□□ -0.36
CLIP4-208ENST00000456385 MAP3K4Q9Y6R4 1608 aa12.77□□□□□ -0.36
CLIP4-208ENST00000456385 ZNF500O60304 480 aaPredicted RBP12.77□□□□□ -0.36
CLIP4-208ENST00000456385 TMEM132EQ6IEE7 984 aa12.77□□□□□ -0.36
CLIP4-208ENST00000456385 CHAMP1Q96JM3 812 aa12.77□□□□□ -0.36
CLIP4-208ENST00000456385 PDLIM2Q96JY6 352 aa12.77□□□□□ -0.36
CLIP4-208ENST00000456385 PPIP5K1Q6PFW1 1433 aa12.77□□□□□ -0.37
CLIP4-208ENST00000456385 NCBP3Q53F19 620 aaKnown RBP12.77□□□□□ -0.37
CLIP4-208ENST00000456385 SPAG9O60271 1321 aaKnown RBP12.76□□□□□ -0.37
CLIP4-208ENST00000456385 SBNO2Q9Y2G9 1366 aa12.76□□□□□ -0.37
CLIP4-208ENST00000456385 IPO8O15397 1037 aaKnown RBP12.76□□□□□ -0.37
CLIP4-208ENST00000456385 HS1BP3Q53T59 392 aa12.76□□□□□ -0.37
CLIP4-208ENST00000456385 EFCAB2Q5VUJ9 269 aa12.76□□□□□ -0.37
CLIP4-208ENST00000456385 KIF16BQ96L93 1317 aa12.75□□□□□ -0.37
CLIP4-208ENST00000456385 ADGRB2O60241 1585 aa12.75□□□□□ -0.37
CLIP4-208ENST00000456385 ZBTB7BO15156 539 aaPredicted RBP12.75□□□□□ -0.37
CLIP4-208ENST00000456385 PRPF40AO75400 957 aaKnown RBP12.75□□□□□ -0.37
CLIP4-208ENST00000456385 SIRT2Q8IXJ6 389 aa12.75□□□□□ -0.37
CLIP4-208ENST00000456385 GPT2Q8TD30 523 aa12.75□□□□□ -0.37
CLIP4-208ENST00000456385 CFAP74Q9C0B2 1584 aa12.75□□□□□ -0.37
CLIP4-208ENST00000456385 ABCC11Q96J66 1382 aa12.74□□□□□ -0.37
CLIP4-208ENST00000456385 MYOM2P54296 1465 aa12.74□□□□□ -0.37
CLIP4-208ENST00000456385 KIF3BO15066 747 aa12.74□□□□□ -0.37
CLIP4-208ENST00000456385 GSPT1P15170 499 aaKnown RBP12.74□□□□□ -0.37
CLIP4-208ENST00000456385 ZKSCAN5Q9Y2L8 839 aa12.74□□□□□ -0.37
CLIP4-208ENST00000456385 ZBTB7CA1YPR0 619 aa12.73□□□□□ -0.37
CLIP4-208ENST00000456385 CYP2E1P05181 493 aaPredicted RBP12.73□□□□□ -0.37
CLIP4-208ENST00000456385 CHGAP10645 457 aaKnown RBP12.73□□□□□ -0.37
CLIP4-208ENST00000456385 ZGPATQ8N5A5 531 aaKnown RBP12.73□□□□□ -0.37
CLIP4-208ENST00000456385 GCC1Q96CN9 775 aa12.73□□□□□ -0.37
CLIP4-208ENST00000456385 MAP7D2Q96T17 732 aa12.73□□□□□ -0.37
CLIP4-208ENST00000456385 PLCH2O75038 1416 aa12.73□□□□□ -0.37
CLIP4-208ENST00000456385 ADGRL1O94910 1474 aa12.73□□□□□ -0.37
CLIP4-208ENST00000456385 NSFL1CQ9UNZ2 370 aaKnown RBP12.73□□□□□ -0.37
CLIP4-208ENST00000456385 ARHGAP31Q2M1Z3 1444 aa12.72□□□□□ -0.37
CLIP4-208ENST00000456385 SYCE3A1L190 88 aa12.72□□□□□ -0.37
CLIP4-208ENST00000456385 CDC45O75419 566 aa12.72□□□□□ -0.37
CLIP4-208ENST00000456385 NUCB2P80303 420 aa12.72□□□□□ -0.37
CLIP4-208ENST00000456385 PRDM10Q9NQV6 1147 aa12.72□□□□□ -0.37
CLIP4-208ENST00000456385 MYO3AQ8NEV4 1616 aa12.72□□□□□ -0.37
CLIP4-208ENST00000456385 RABEP1Q15276 862 aa12.71□□□□□ -0.37
CLIP4-208ENST00000456385 RNF214Q8ND24 703 aa12.71□□□□□ -0.37
CLIP4-208ENST00000456385 JARID2Q92833 1246 aaPredicted RBP12.71□□□□□ -0.37
CLIP4-208ENST00000456385 GGNBP2Q9H3C7 697 aa12.71□□□□□ -0.37
CLIP4-208ENST00000456385 TMEM63CQ9P1W3 806 aa12.71□□□□□ -0.37
CLIP4-208ENST00000456385 ZDHHC9Q9Y397 364 aa12.71□□□□□ -0.37
CLIP4-208ENST00000456385 IL16Q14005 1332 aa12.71□□□□□ -0.38
CLIP4-208ENST00000456385 DYNC1I1O14576 645 aa12.71□□□□□ -0.38
CLIP4-208ENST00000456385 FOXD4L5Q5VV16 416 aaPredicted RBP12.71□□□□□ -0.38
CLIP4-208ENST00000456385 FOXD4L4Q8WXT5 416 aaPredicted RBP12.71□□□□□ -0.38
CLIP4-208ENST00000456385 CABP2Q9NPB3 220 aa12.71□□□□□ -0.38
CLIP4-208ENST00000456385 ABCC1P33527 1531 aa12.7□□□□□ -0.38
CLIP4-208ENST00000456385 TET3O43151 1660 aa12.7□□□□□ -0.38
CLIP4-208ENST00000456385 ALDH1L2Q3SY69 923 aa12.7□□□□□ -0.38
CLIP4-208ENST00000456385 PODXL2Q9NZ53 605 aa12.7□□□□□ -0.38
CLIP4-208ENST00000456385 ELL2O00472 640 aaPredicted RBP12.7□□□□□ -0.38
CLIP4-208ENST00000456385 C16orf71Q8IYS4 520 aaPredicted RBP12.7□□□□□ -0.38
CLIP4-208ENST00000456385 USP26Q9BXU7 913 aa12.7□□□□□ -0.38
CLIP4-208ENST00000456385 SAFB2Q14151 953 aaKnown RBP eCLIP12.69□□□□□ -0.38
CLIP4-208ENST00000456385 LRSAM1Q6UWE0 723 aa12.69□□□□□ -0.38
CLIP4-208ENST00000456385 PLEKHM2Q8IWE5 1019 aa12.69□□□□□ -0.38
CLIP4-208ENST00000456385 MED14O60244 1454 aa12.69□□□□□ -0.38
CLIP4-208ENST00000456385 CSPP1Q1MSJ5 1256 aa12.68□□□□□ -0.38
CLIP4-208ENST00000456385 TSPYL6Q8N831 410 aa12.68□□□□□ -0.38
CLIP4-208ENST00000456385 ATAD2Q6PL18 1390 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms