RNA–Protein interactions for RNA: ENST00000454240.1

SMARCC1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

TSL 3

Gene SMARCC1, Length 636 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-203ENST00000454240 LMOD2Q6P5Q4 547 aa39.1■■■■□ 3.85
SMARCC1-203ENST00000454240 CD163L1Q9NR16 1453 aa39.1■■■■□ 3.85
SMARCC1-203ENST00000454240 NINLQ9Y2I6 1382 aa39.09■■■■□ 3.85
SMARCC1-203ENST00000454240 MON2Q7Z3U7 1717 aa39.08■■■■□ 3.85
SMARCC1-203ENST00000454240 SSH2Q76I76 1423 aa39.07■■■■□ 3.85
SMARCC1-203ENST00000454240 KTN1Q86UP2 1357 aaKnown RBP39.03■■■■□ 3.84
SMARCC1-203ENST00000454240 NRKQ7Z2Y5 1582 aa39.03■■■■□ 3.84
SMARCC1-203ENST00000454240 ABCA3Q99758 1704 aa39.03■■■■□ 3.84
SMARCC1-203ENST00000454240 TERF2IPQ9NYB0 399 aa39.01■■■■□ 3.84
SMARCC1-203ENST00000454240 CRYBG1Q9Y4K1 1723 aa39■■■■□ 3.83
SMARCC1-203ENST00000454240 HDGFL2Q7Z4V5 671 aaPredicted RBP39■■■■□ 3.83
SMARCC1-203ENST00000454240 MARF1Q9Y4F3 1742 aaKnown RBP39■■■■□ 3.83
SMARCC1-203ENST00000454240 MYOM1P52179 1685 aa39■■■■□ 3.83
SMARCC1-203ENST00000454240 CABLES1Q8TDN4 633 aa38.99■■■■□ 3.83
SMARCC1-203ENST00000454240 A0A1W2PP64 1363 aa38.98■■■■□ 3.83
SMARCC1-203ENST00000454240 MEX3CQ5U5Q3 659 aaKnown RBP38.98■■■■□ 3.83
SMARCC1-203ENST00000454240 ABTB2Q8N961 1025 aa38.98■■■■□ 3.83
SMARCC1-203ENST00000454240 TTC21BQ7Z4L5 1316 aa38.97■■■■□ 3.83
SMARCC1-203ENST00000454240 C11orf95C9JLR9 678 aaPredicted RBP38.95■■■■□ 3.83
SMARCC1-203ENST00000454240 ADAMTS2O95450 1211 aa38.95■■■■□ 3.83
SMARCC1-203ENST00000454240 PIK3C2AO00443 1686 aa38.94■■■■□ 3.82
SMARCC1-203ENST00000454240 TTC21AQ8NDW8 1320 aa38.93■■■■□ 3.82
SMARCC1-203ENST00000454240 ANKRD36BQ8N2N9 1353 aa38.93■■■■□ 3.82
SMARCC1-203ENST00000454240 PLEKHG5O94827 1062 aa38.92■■■■□ 3.82
SMARCC1-203ENST00000454240 NUTM2GQ5VZR2 741 aa38.92■■■■□ 3.82
SMARCC1-203ENST00000454240 PHF23Q9BUL5 403 aaPredicted RBP38.92■■■■□ 3.82
SMARCC1-203ENST00000454240 EDC4Q6P2E9 1401 aaKnown RBP38.9■■■■□ 3.82
SMARCC1-203ENST00000454240 PHRF1Q9P1Y6 1649 aaKnown RBP38.9■■■■□ 3.82
SMARCC1-203ENST00000454240 HAP1P54257 671 aaPredicted RBP38.89■■■■□ 3.82
SMARCC1-203ENST00000454240 NLRP13Q86W25 1043 aa38.89■■■■□ 3.82
SMARCC1-203ENST00000454240 RGS17Q9UGC6 210 aaPredicted RBP38.89■■■■□ 3.82
SMARCC1-203ENST00000454240 ZEB1P37275 1124 aaPredicted RBP38.88■■■■□ 3.81
SMARCC1-203ENST00000454240 C8orf37Q96NL8 207 aa38.88■■■■□ 3.81
SMARCC1-203ENST00000454240 POLR3GLQ9BT43 218 aa38.86■■■■□ 3.81
SMARCC1-203ENST00000454240 USP19O94966 1318 aa38.86■■■■□ 3.81
SMARCC1-203ENST00000454240 NLRP6P59044 892 aa38.85■■■■□ 3.81
SMARCC1-203ENST00000454240 SUGP2Q8IX01 1082 aaKnown RBP eCLIP38.84■■■■□ 3.81
SMARCC1-203ENST00000454240 NGLY1Q96IV0 654 aa38.83■■■■□ 3.81
SMARCC1-203ENST00000454240 USP54Q70EL1 1684 aa38.81■■■■□ 3.8
SMARCC1-203ENST00000454240 AFF2P51816 1311 aa38.8■■■■□ 3.8
SMARCC1-203ENST00000454240 KIF7Q2M1P5 1343 aa38.8■■■■□ 3.8
SMARCC1-203ENST00000454240 FNBP4Q8N3X1 1017 aaPredicted RBP38.79■■■■□ 3.8
SMARCC1-203ENST00000454240 SLIT3O75094 1523 aa38.79■■■■□ 3.8
SMARCC1-203ENST00000454240 USP31Q70CQ4 1352 aa38.78■■■■□ 3.8
SMARCC1-203ENST00000454240 NME9Q86XW9 330 aa38.77■■■■□ 3.8
SMARCC1-203ENST00000454240 GCP02774 474 aa38.76■■■■□ 3.8
SMARCC1-203ENST00000454240 ZNF772Q68DY9 489 aaPredicted RBP38.75■■■■□ 3.79
SMARCC1-203ENST00000454240 CARD14Q9BXL6 1004 aa38.75■■■■□ 3.79
SMARCC1-203ENST00000454240 FAM83GA6ND36 823 aa38.74■■■■□ 3.79
SMARCC1-203ENST00000454240 ZRANB1Q9UGI0 708 aa38.74■■■■□ 3.79
SMARCC1-203ENST00000454240 SLIT2O94813 1529 aa38.73■■■■□ 3.79
SMARCC1-203ENST00000454240 COL14A1Q05707 1796 aaKnown RBP38.72■■■■□ 3.79
SMARCC1-203ENST00000454240 PLCH1Q4KWH8 1693 aa38.71■■■■□ 3.79
SMARCC1-203ENST00000454240 NWD2Q9ULI1 1742 aa38.7■■■■□ 3.79
SMARCC1-203ENST00000454240 ZC3H6P61129 1189 aaKnown RBP38.7■■■■□ 3.79
SMARCC1-203ENST00000454240 POTEAQ6S8J7 498 aa38.7■■■■□ 3.79
SMARCC1-203ENST00000454240 KIAA0232Q92628 1395 aa38.7■■■■□ 3.78
SMARCC1-203ENST00000454240 USP21Q9UK80 565 aa38.69■■■■□ 3.78
SMARCC1-203ENST00000454240 CPDO75976 1380 aa38.69■■■■□ 3.78
SMARCC1-203ENST00000454240 CCDC7Q96M83 1385 aa38.69■■■■□ 3.78
SMARCC1-203ENST00000454240 BCL9LQ86UU0 1499 aa38.68■■■■□ 3.78
SMARCC1-203ENST00000454240 NSD3Q9BZ95 1437 aa38.68■■■■□ 3.78
SMARCC1-203ENST00000454240 WASHC2AQ641Q2 1341 aa38.67■■■■□ 3.78
SMARCC1-203ENST00000454240 TNKS1BP1Q9C0C2 1729 aaKnown RBP38.67■■■■□ 3.78
SMARCC1-203ENST00000454240 OVOS2A0A0J9YW53 1432 aa38.67■■■■□ 3.78
SMARCC1-203ENST00000454240 OVOS2Q6IE36 1432 aa38.67■■■■□ 3.78
SMARCC1-203ENST00000454240 KIF20BQ96Q89 1820 aa38.67■■■■□ 3.78
SMARCC1-203ENST00000454240 KCNH5Q8NCM2 988 aa38.66■■■■□ 3.78
SMARCC1-203ENST00000454240 PANK3Q9H999 370 aa38.66■■■■□ 3.78
SMARCC1-203ENST00000454240 PRDM11Q9NQV5 511 aa38.66■■■■□ 3.78
SMARCC1-203ENST00000454240 FYB1O15117 783 aa38.65■■■■□ 3.78
SMARCC1-203ENST00000454240 NFAT5O94916 1531 aa38.63■■■■□ 3.77
SMARCC1-203ENST00000454240 UNC5CLQ8IV45 518 aa38.61■■■■□ 3.77
SMARCC1-203ENST00000454240 CHRNA2Q15822 529 aa38.6■■■■□ 3.77
SMARCC1-203ENST00000454240 QTRT2Q9H974 415 aaKnown RBP38.6■■■■□ 3.77
SMARCC1-203ENST00000454240 NRAPQ86VF7 1730 aa38.6■■■■□ 3.77
SMARCC1-203ENST00000454240 COG3Q96JB2 828 aa38.59■■■■□ 3.77
SMARCC1-203ENST00000454240 BTG4Q9NY30 223 aa38.58■■■■□ 3.77
SMARCC1-203ENST00000454240 LMO7Q8WWI1 1683 aa38.58■■■■□ 3.77
SMARCC1-203ENST00000454240 ATRNO75882 1429 aa38.57■■■■□ 3.77
SMARCC1-203ENST00000454240 GGNBP2Q9H3C7 697 aa38.57■■■■□ 3.76
SMARCC1-203ENST00000454240 TRPC5Q9UL62 973 aaPredicted RBP38.57■■■■□ 3.76
SMARCC1-203ENST00000454240 SOX12O15370 315 aa38.56■■■■□ 3.76
SMARCC1-203ENST00000454240 ARHGEF25Q86VW2 580 aa38.56■■■■□ 3.76
SMARCC1-203ENST00000454240 COL18A1P39060 1754 aa38.56■■■■□ 3.76
SMARCC1-203ENST00000454240 CGNL1Q0VF96 1302 aa38.54■■■■□ 3.76
SMARCC1-203ENST00000454240 ILDR2Q71H61 639 aa38.53■■■■□ 3.76
SMARCC1-203ENST00000454240 CAMTA1Q9Y6Y1 1673 aa38.52■■■■□ 3.76
SMARCC1-203ENST00000454240 AATKQ6ZMQ8 1374 aa38.52■■■■□ 3.76
SMARCC1-203ENST00000454240 LTN1O94822 1766 aa38.52■■■■□ 3.76
SMARCC1-203ENST00000454240 RXRBP28702 533 aa38.49■■■■□ 3.75
SMARCC1-203ENST00000454240 ANKRD26Q9UPS8 1709 aa38.48■■■■□ 3.75
SMARCC1-203ENST00000454240 ZBTB7CA1YPR0 619 aa38.47■■■■□ 3.75
SMARCC1-203ENST00000454240 RBM6P78332 1123 aaKnown RBP38.47■■■■□ 3.75
SMARCC1-203ENST00000454240 VPS72Q15906 364 aa38.47■■■■□ 3.75
SMARCC1-203ENST00000454240 RGPD5Q99666 1765 aa38.47■■■■□ 3.75
SMARCC1-203ENST00000454240 ABCC6O95255 1503 aa38.44■■■■□ 3.74
SMARCC1-203ENST00000454240 PER1O15534 1290 aaPredicted RBP38.44■■■■□ 3.74
SMARCC1-203ENST00000454240 GJD4Q96KN9 370 aaPredicted RBP38.44■■■■□ 3.74
SMARCC1-203ENST00000454240 KNSTRNQ9Y448 316 aa38.44■■■■□ 3.74
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms