RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 SRPK2P78362 688 aaKnown RBP29.8■■■□□ 2.36
SDC1-205ENST00000447124 GLI3P10071 1580 aa29.8■■■□□ 2.36
SDC1-205ENST00000447124 ATAD2Q6PL18 1390 aa29.78■■■□□ 2.36
SDC1-205ENST00000447124 NUTM2GQ5VZR2 741 aa29.78■■■□□ 2.36
SDC1-205ENST00000447124 BTG4Q9NY30 223 aa29.77■■■□□ 2.36
SDC1-205ENST00000447124 ITSN1Q15811 1721 aa29.76■■■□□ 2.36
SDC1-205ENST00000447124 ONECUT3O60422 494 aaPredicted RBP29.76■■■□□ 2.35
SDC1-205ENST00000447124 TRIM26Q12899 539 aaPredicted RBP29.76■■■□□ 2.35
SDC1-205ENST00000447124 CCDC9Q9Y3X0 531 aaKnown RBP29.74■■■□□ 2.35
SDC1-205ENST00000447124 TOPAZ1Q8N9V7 1692 aa29.74■■■□□ 2.35
SDC1-205ENST00000447124 ROCK2O75116 1388 aaKnown RBP29.74■■■□□ 2.35
SDC1-205ENST00000447124 TRPM1Q7Z4N2 1603 aa29.74■■■□□ 2.35
SDC1-205ENST00000447124 SEPT12Q8IYM1 358 aa29.73■■■□□ 2.35
SDC1-205ENST00000447124 CABP1Q9NZU7 370 aa29.73■■■□□ 2.35
SDC1-205ENST00000447124 PLCH1Q4KWH8 1693 aa29.72■■■□□ 2.35
SDC1-205ENST00000447124 PPIP5K1Q6PFW1 1433 aa29.71■■■□□ 2.35
SDC1-205ENST00000447124 NWD2Q9ULI1 1742 aa29.71■■■□□ 2.35
SDC1-205ENST00000447124 ABTB2Q8N961 1025 aa29.69■■■□□ 2.34
SDC1-205ENST00000447124 PRDM11Q9NQV5 511 aa29.69■■■□□ 2.34
SDC1-205ENST00000447124 CRYBG1Q9Y4K1 1723 aa29.68■■■□□ 2.34
SDC1-205ENST00000447124 ZC3H6P61129 1189 aaKnown RBP29.68■■■□□ 2.34
SDC1-205ENST00000447124 QRICH2Q9H0J4 1663 aa29.68■■■□□ 2.34
SDC1-205ENST00000447124 EVC2Q86UK5 1308 aa29.68■■■□□ 2.34
SDC1-205ENST00000447124 KIAA0232Q92628 1395 aa29.67■■■□□ 2.34
SDC1-205ENST00000447124 CHRNA2Q15822 529 aa29.67■■■□□ 2.34
SDC1-205ENST00000447124 COL14A1Q05707 1796 aaKnown RBP29.64■■■□□ 2.34
SDC1-205ENST00000447124 EP400Q96L91 3159 aa29.63■■■□□ 2.33
SDC1-205ENST00000447124 NRAPQ86VF7 1730 aa29.63■■■□□ 2.33
SDC1-205ENST00000447124 FAM98CQ17RN3 349 aaKnown RBP29.63■■■□□ 2.33
SDC1-205ENST00000447124 CCDC125Q86Z20 511 aa29.62■■■□□ 2.33
SDC1-205ENST00000447124 SPATA31A5Q5VU36 1347 aa29.62■■■□□ 2.33
SDC1-205ENST00000447124 SPATA31A7Q8IWB4 1347 aa29.62■■■□□ 2.33
SDC1-205ENST00000447124 USP19O94966 1318 aa29.61■■■□□ 2.33
SDC1-205ENST00000447124 BRWD3Q6RI45 1802 aa29.61■■■□□ 2.33
SDC1-205ENST00000447124 NLRP13Q86W25 1043 aa29.6■■■□□ 2.33
SDC1-205ENST00000447124 CARD11Q9BXL7 1154 aa29.6■■■□□ 2.33
SDC1-205ENST00000447124 KRT27Q7Z3Y8 459 aa29.59■■■□□ 2.33
SDC1-205ENST00000447124 TONSLQ96HA7 1378 aa29.59■■■□□ 2.33
SDC1-205ENST00000447124 USP6P35125 1406 aa29.57■■■□□ 2.32
SDC1-205ENST00000447124 BRD4O60885 1362 aaPredicted RBP29.57■■■□□ 2.32
SDC1-205ENST00000447124 GCP02774 474 aa29.57■■■□□ 2.32
SDC1-205ENST00000447124 PHRF1Q9P1Y6 1649 aaKnown RBP29.56■■■□□ 2.32
SDC1-205ENST00000447124 SSH2Q76I76 1423 aa29.56■■■□□ 2.32
SDC1-205ENST00000447124 STRN4Q9NRL3 753 aa29.56■■■□□ 2.32
SDC1-205ENST00000447124 A0A0G2JS52 829 aa29.55■■■□□ 2.32
SDC1-205ENST00000447124 MYT1Q01538 1121 aa29.55■■■□□ 2.32
SDC1-205ENST00000447124 NLRP6P59044 892 aa29.54■■■□□ 2.32
SDC1-205ENST00000447124 CPDO75976 1380 aa29.53■■■□□ 2.32
SDC1-205ENST00000447124 SPATA31A1Q5TZJ5 1347 aa29.53■■■□□ 2.32
SDC1-205ENST00000447124 ZNF692Q9BU19 519 aaPredicted RBP29.52■■■□□ 2.32
SDC1-205ENST00000447124 EVA1CP58658 441 aa29.5■■■□□ 2.31
SDC1-205ENST00000447124 BLMP54132 1417 aaPredicted RBP29.5■■■□□ 2.31
SDC1-205ENST00000447124 NRKQ7Z2Y5 1582 aa29.5■■■□□ 2.31
SDC1-205ENST00000447124 SBNO2Q9Y2G9 1366 aa29.5■■■□□ 2.31
SDC1-205ENST00000447124 CAMTA1Q9Y6Y1 1673 aa29.5■■■□□ 2.31
SDC1-205ENST00000447124 TTC21BQ7Z4L5 1316 aa29.49■■■□□ 2.31
SDC1-205ENST00000447124 DEFB132Q7Z7B7 95 aa29.49■■■□□ 2.31
SDC1-205ENST00000447124 FAM182BQ5T319 152 aa29.48■■■□□ 2.31
SDC1-205ENST00000447124 LARP1Q6PKG0 1096 aaKnown RBP29.48■■■□□ 2.31
SDC1-205ENST00000447124 USP35Q9P2H5 1018 aa29.46■■■□□ 2.31
SDC1-205ENST00000447124 CPSF1Q10570 1443 aaKnown RBP29.45■■■□□ 2.31
SDC1-205ENST00000447124 ZBTB7CA1YPR0 619 aa29.42■■■□□ 2.3
SDC1-205ENST00000447124 LMO7Q8WWI1 1683 aa29.41■■■□□ 2.3
SDC1-205ENST00000447124 BARGINQ6ZT62 677 aa29.41■■■□□ 2.3
SDC1-205ENST00000447124 SLC12A5Q9H2X9 1139 aa29.41■■■□□ 2.3
SDC1-205ENST00000447124 THSD7AQ9UPZ6 1657 aa29.4■■■□□ 2.3
SDC1-205ENST00000447124 SLIT3O75094 1523 aa29.4■■■□□ 2.3
SDC1-205ENST00000447124 SF3B2Q13435 895 aaKnown RBP29.4■■■□□ 2.3
SDC1-205ENST00000447124 KTN1Q86UP2 1357 aaKnown RBP29.39■■■□□ 2.3
SDC1-205ENST00000447124 TESK2Q96S53 571 aa29.39■■■□□ 2.3
SDC1-205ENST00000447124 ZRANB1Q9UGI0 708 aa29.39■■■□□ 2.3
SDC1-205ENST00000447124 PIK3C2AO00443 1686 aa29.39■■■□□ 2.3
SDC1-205ENST00000447124 TTC21AQ8NDW8 1320 aa29.39■■■□□ 2.3
SDC1-205ENST00000447124 ST20-MTHFSA0A0A6YYL1 179 aa29.38■■■□□ 2.29
SDC1-205ENST00000447124 TCP11L2Q8N4U5 519 aa29.38■■■□□ 2.29
SDC1-205ENST00000447124 TMC1Q8TDI8 760 aa29.38■■■□□ 2.29
SDC1-205ENST00000447124 AXIN2Q9Y2T1 843 aa29.38■■■□□ 2.29
SDC1-205ENST00000447124 AATKQ6ZMQ8 1374 aa29.38■■■□□ 2.29
SDC1-205ENST00000447124 AKAP12Q02952 1782 aa29.36■■■□□ 2.29
SDC1-205ENST00000447124 ARHGEF25Q86VW2 580 aa29.36■■■□□ 2.29
SDC1-205ENST00000447124 COL5A2P05997 1499 aaPredicted RBP29.36■■■□□ 2.29
SDC1-205ENST00000447124 CD163L1Q9NR16 1453 aa29.36■■■□□ 2.29
SDC1-205ENST00000447124 PUS7Q96PZ0 661 aaKnown RBP29.35■■■□□ 2.29
SDC1-205ENST00000447124 SOX12O15370 315 aa29.34■■■□□ 2.29
SDC1-205ENST00000447124 SUGP2Q8IX01 1082 aaKnown RBP eCLIP29.34■■■□□ 2.29
SDC1-205ENST00000447124 KCNH5Q8NCM2 988 aa29.33■■■□□ 2.29
SDC1-205ENST00000447124 THRAP3Q9Y2W1 955 aaKnown RBP29.33■■■□□ 2.29
SDC1-205ENST00000447124 NME9Q86XW9 330 aa29.31■■■□□ 2.28
SDC1-205ENST00000447124 COL18A1P39060 1754 aa29.3■■■□□ 2.28
SDC1-205ENST00000447124 USP31Q70CQ4 1352 aa29.29■■■□□ 2.28
SDC1-205ENST00000447124 BAG6P46379 1132 aa29.29■■■□□ 2.28
SDC1-205ENST00000447124 FAM196AQ6ZSG2 479 aa29.29■■■□□ 2.28
SDC1-205ENST00000447124 HDGFL2Q7Z4V5 671 aaPredicted RBP29.29■■■□□ 2.28
SDC1-205ENST00000447124 EN1Q05925 392 aaPredicted RBP29.28■■■□□ 2.28
SDC1-205ENST00000447124 PDE3BQ13370 1112 aa29.28■■■□□ 2.28
SDC1-205ENST00000447124 PCGF6Q9BYE7 350 aa29.28■■■□□ 2.28
SDC1-205ENST00000447124 CRB1P82279 1406 aa29.28■■■□□ 2.28
SDC1-205ENST00000447124 TRIM37O94972 964 aa29.26■■■□□ 2.27
SDC1-205ENST00000447124 TOM1L2Q6ZVM7 507 aa29.26■■■□□ 2.27
SDC1-205ENST00000447124 MON2Q7Z3U7 1717 aa29.25■■■□□ 2.27
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms