RNA–Protein interactions for RNA: ENST00000444951.5

LIME1-202, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3

Gene LIME1, Length 451 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-202ENST00000444951 PLCH1Q4KWH8 1693 aa24.09■■□□□ 1.45
LIME1-202ENST00000444951 LMOD2Q6P5Q4 547 aa24.08■■□□□ 1.45
LIME1-202ENST00000444951 TULP4Q9NRJ4 1543 aa24.08■■□□□ 1.45
LIME1-202ENST00000444951 TESK2Q96S53 571 aa24.06■■□□□ 1.44
LIME1-202ENST00000444951 ALS2Q96Q42 1657 aa24.05■■□□□ 1.44
LIME1-202ENST00000444951 ARHGEF10O15013 1369 aa24.05■■□□□ 1.44
LIME1-202ENST00000444951 HAP1P54257 671 aaPredicted RBP24.05■■□□□ 1.44
LIME1-202ENST00000444951 BRWD3Q6RI45 1802 aa24.05■■□□□ 1.44
LIME1-202ENST00000444951 WASLO00401 505 aaPredicted RBP24.04■■□□□ 1.44
LIME1-202ENST00000444951 NWD2Q9ULI1 1742 aa24.04■■□□□ 1.44
LIME1-202ENST00000444951 SRCAPQ6ZRS2 3230 aa24.03■■□□□ 1.44
LIME1-202ENST00000444951 POLR3GLQ9BT43 218 aa24.02■■□□□ 1.44
LIME1-202ENST00000444951 EVC2Q86UK5 1308 aa24.02■■□□□ 1.44
LIME1-202ENST00000444951 SRPK2P78362 688 aaKnown RBP24.01■■□□□ 1.43
LIME1-202ENST00000444951 TMF1P82094 1093 aa24.01■■□□□ 1.43
LIME1-202ENST00000444951 CDK19Q9BWU1 502 aa24.01■■□□□ 1.43
LIME1-202ENST00000444951 SBNO2Q9Y2G9 1366 aa24.01■■□□□ 1.43
LIME1-202ENST00000444951 FAM83GA6ND36 823 aa24■■□□□ 1.43
LIME1-202ENST00000444951 CABP2Q9NPB3 220 aa24■■□□□ 1.43
LIME1-202ENST00000444951 CRYBG1Q9Y4K1 1723 aa24■■□□□ 1.43
LIME1-202ENST00000444951 ATP7BP35670 1465 aa24■■□□□ 1.43
LIME1-202ENST00000444951 NRAPQ86VF7 1730 aa23.99■■□□□ 1.43
LIME1-202ENST00000444951 VPS72Q15906 364 aa23.99■■□□□ 1.43
LIME1-202ENST00000444951 C11orf95C9JLR9 678 aaPredicted RBP23.96■■□□□ 1.43
LIME1-202ENST00000444951 ITSN1Q15811 1721 aa23.96■■□□□ 1.43
LIME1-202ENST00000444951 SLC24A1O60721 1099 aa23.95■■□□□ 1.42
LIME1-202ENST00000444951 SEPT12Q8IYM1 358 aa23.95■■□□□ 1.42
LIME1-202ENST00000444951 NGDNQ8NEJ9 315 aaKnown RBP23.94■■□□□ 1.42
LIME1-202ENST00000444951 NUDT16Q96DE0 195 aaKnown RBP23.94■■□□□ 1.42
LIME1-202ENST00000444951 TOPAZ1Q8N9V7 1692 aa23.93■■□□□ 1.42
LIME1-202ENST00000444951 CCDC9Q9Y3X0 531 aaKnown RBP23.93■■□□□ 1.42
LIME1-202ENST00000444951 COL14A1Q05707 1796 aaKnown RBP23.92■■□□□ 1.42
LIME1-202ENST00000444951 CDCA8Q53HL2 280 aa23.91■■□□□ 1.42
LIME1-202ENST00000444951 BTG4Q9NY30 223 aa23.91■■□□□ 1.42
LIME1-202ENST00000444951 ONECUT3O60422 494 aaPredicted RBP23.9■■□□□ 1.42
LIME1-202ENST00000444951 PAK3O75914 559 aaPredicted RBP23.9■■□□□ 1.42
LIME1-202ENST00000444951 CCDC125Q86Z20 511 aa23.89■■□□□ 1.41
LIME1-202ENST00000444951 PHRF1Q9P1Y6 1649 aaKnown RBP23.88■■□□□ 1.41
LIME1-202ENST00000444951 KIF7Q2M1P5 1343 aa23.88■■□□□ 1.41
LIME1-202ENST00000444951 BLMP54132 1417 aaPredicted RBP23.88■■□□□ 1.41
LIME1-202ENST00000444951 ZNF316A6NFI3 1004 aaPredicted RBP23.88■■□□□ 1.41
LIME1-202ENST00000444951 TMC1Q8TDI8 760 aa23.88■■□□□ 1.41
LIME1-202ENST00000444951 WASHC2AQ641Q2 1341 aa23.86■■□□□ 1.41
LIME1-202ENST00000444951 FAM98CQ17RN3 349 aaKnown RBP23.86■■□□□ 1.41
LIME1-202ENST00000444951 KRT27Q7Z3Y8 459 aa23.85■■□□□ 1.41
LIME1-202ENST00000444951 DEFB132Q7Z7B7 95 aa23.85■■□□□ 1.41
LIME1-202ENST00000444951 POLR3AO14802 1390 aaPredicted RBP23.85■■□□□ 1.41
LIME1-202ENST00000444951 CCDC7Q96M83 1385 aa23.85■■□□□ 1.41
LIME1-202ENST00000444951 NUTM2GQ5VZR2 741 aa23.84■■□□□ 1.41
LIME1-202ENST00000444951 PPIP5K1Q6PFW1 1433 aa23.84■■□□□ 1.41
LIME1-202ENST00000444951 ACEP12821 1306 aa23.84■■□□□ 1.41
LIME1-202ENST00000444951 CABP1Q9NZU7 370 aa23.83■■□□□ 1.41
LIME1-202ENST00000444951 CCDC61Q9Y6R9 512 aa23.83■■□□□ 1.41
LIME1-202ENST00000444951 KIAA0232Q92628 1395 aa23.82■■□□□ 1.4
LIME1-202ENST00000444951 ZRANB1Q9UGI0 708 aa23.82■■□□□ 1.4
LIME1-202ENST00000444951 A0A0G2JS52 829 aa23.81■■□□□ 1.4
LIME1-202ENST00000444951 MYT1Q01538 1121 aa23.81■■□□□ 1.4
LIME1-202ENST00000444951 CHRNA2Q15822 529 aa23.81■■□□□ 1.4
LIME1-202ENST00000444951 PUS7Q96PZ0 661 aaKnown RBP23.81■■□□□ 1.4
LIME1-202ENST00000444951 SLC12A5Q9H2X9 1139 aa23.81■■□□□ 1.4
LIME1-202ENST00000444951 PRDM11Q9NQV5 511 aa23.81■■□□□ 1.4
LIME1-202ENST00000444951 SPATA31A5Q5VU36 1347 aa23.81■■□□□ 1.4
LIME1-202ENST00000444951 SPATA31A7Q8IWB4 1347 aa23.81■■□□□ 1.4
LIME1-202ENST00000444951 PLEKHG3A1L390 1219 aa23.8■■□□□ 1.4
LIME1-202ENST00000444951 THSD7AQ9UPZ6 1657 aa23.79■■□□□ 1.4
LIME1-202ENST00000444951 NRKQ7Z2Y5 1582 aa23.78■■□□□ 1.4
LIME1-202ENST00000444951 ZC3H6P61129 1189 aaKnown RBP23.78■■□□□ 1.4
LIME1-202ENST00000444951 FAM182BQ5T319 152 aa23.77■■□□□ 1.4
LIME1-202ENST00000444951 MYOM1P52179 1685 aa23.76■■□□□ 1.39
LIME1-202ENST00000444951 SF3B2Q13435 895 aaKnown RBP23.73■■□□□ 1.39
LIME1-202ENST00000444951 STRN4Q9NRL3 753 aa23.73■■□□□ 1.39
LIME1-202ENST00000444951 SPATA31A1Q5TZJ5 1347 aa23.73■■□□□ 1.39
LIME1-202ENST00000444951 HDGFL2Q7Z4V5 671 aaPredicted RBP23.72■■□□□ 1.39
LIME1-202ENST00000444951 TERF2IPQ9NYB0 399 aa23.72■■□□□ 1.39
LIME1-202ENST00000444951 USP19O94966 1318 aa23.72■■□□□ 1.39
LIME1-202ENST00000444951 NINLQ9Y2I6 1382 aa23.72■■□□□ 1.39
LIME1-202ENST00000444951 LMO7Q8WWI1 1683 aa23.71■■□□□ 1.39
LIME1-202ENST00000444951 CAMTA1Q9Y6Y1 1673 aa23.71■■□□□ 1.39
LIME1-202ENST00000444951 DDX10Q13206 875 aaKnown RBP23.71■■□□□ 1.39
LIME1-202ENST00000444951 ABTB2Q8N961 1025 aa23.71■■□□□ 1.39
LIME1-202ENST00000444951 PANK3Q9H999 370 aa23.7■■□□□ 1.38
LIME1-202ENST00000444951 A0A1W2PP64 1363 aa23.69■■□□□ 1.38
LIME1-202ENST00000444951 RGPD1P0DJD0 1748 aa23.69■■□□□ 1.38
LIME1-202ENST00000444951 SSH2Q76I76 1423 aa23.68■■□□□ 1.38
LIME1-202ENST00000444951 KTN1Q86UP2 1357 aaKnown RBP23.68■■□□□ 1.38
LIME1-202ENST00000444951 TNS1Q9HBL0 1735 aaKnown RBP23.68■■□□□ 1.38
LIME1-202ENST00000444951 CD163L1Q9NR16 1453 aa23.68■■□□□ 1.38
LIME1-202ENST00000444951 CPDO75976 1380 aa23.66■■□□□ 1.38
LIME1-202ENST00000444951 ANKRD36BQ8N2N9 1353 aa23.66■■□□□ 1.38
LIME1-202ENST00000444951 USP6P35125 1406 aa23.66■■□□□ 1.38
LIME1-202ENST00000444951 AKAP12Q02952 1782 aa23.65■■□□□ 1.38
LIME1-202ENST00000444951 LARP1Q6PKG0 1096 aaKnown RBP23.65■■□□□ 1.38
LIME1-202ENST00000444951 USP35Q9P2H5 1018 aa23.65■■□□□ 1.38
LIME1-202ENST00000444951 CPSF1Q10570 1443 aaKnown RBP23.65■■□□□ 1.38
LIME1-202ENST00000444951 GCP02774 474 aa23.64■■□□□ 1.37
LIME1-202ENST00000444951 BAG6P46379 1132 aa23.64■■□□□ 1.37
LIME1-202ENST00000444951 ZNF692Q9BU19 519 aaPredicted RBP23.64■■□□□ 1.37
LIME1-202ENST00000444951 PIK3C2AO00443 1686 aa23.64■■□□□ 1.37
LIME1-202ENST00000444951 EN1Q05925 392 aaPredicted RBP23.63■■□□□ 1.37
LIME1-202ENST00000444951 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.63■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms