RNA–Protein interactions for RNA: ENST00000442975.6

CDKN3-204, Transcript of cyclin dependent kinase inhibitor 3, humanhuman

TSL 1 (best) BASIC

Gene CDKN3, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDKN3-204ENST00000442975 ATRNO75882 1429 aa29.95■■■□□ 2.38
CDKN3-204ENST00000442975 BCL9LQ86UU0 1499 aa29.94■■■□□ 2.38
CDKN3-204ENST00000442975 ALS2Q96Q42 1657 aa29.94■■■□□ 2.38
CDKN3-204ENST00000442975 ABCA3Q99758 1704 aa29.93■■■□□ 2.38
CDKN3-204ENST00000442975 MARF1Q9Y4F3 1742 aaKnown RBP29.93■■■□□ 2.38
CDKN3-204ENST00000442975 SLIT2O94813 1529 aa29.91■■■□□ 2.38
CDKN3-204ENST00000442975 NUTM2GQ5VZR2 741 aa29.88■■■□□ 2.37
CDKN3-204ENST00000442975 UNC5CLQ8IV45 518 aa29.88■■■□□ 2.37
CDKN3-204ENST00000442975 CABP1Q9NZU7 370 aa29.88■■■□□ 2.37
CDKN3-204ENST00000442975 SBNO2Q9Y2G9 1366 aa29.84■■■□□ 2.37
CDKN3-204ENST00000442975 FAM83GA6ND36 823 aa29.83■■■□□ 2.37
CDKN3-204ENST00000442975 ABTB2Q8N961 1025 aa29.82■■■□□ 2.36
CDKN3-204ENST00000442975 GJD4Q96KN9 370 aaPredicted RBP29.82■■■□□ 2.36
CDKN3-204ENST00000442975 PLCH1Q4KWH8 1693 aa29.82■■■□□ 2.36
CDKN3-204ENST00000442975 ATAD2Q6PL18 1390 aa29.81■■■□□ 2.36
CDKN3-204ENST00000442975 PRDM11Q9NQV5 511 aa29.81■■■□□ 2.36
CDKN3-204ENST00000442975 CCDC9Q9Y3X0 531 aaKnown RBP29.81■■■□□ 2.36
CDKN3-204ENST00000442975 TNKS1BP1Q9C0C2 1729 aaKnown RBP29.81■■■□□ 2.36
CDKN3-204ENST00000442975 USP6P35125 1406 aa29.8■■■□□ 2.36
CDKN3-204ENST00000442975 CLSPNQ9HAW4 1339 aa29.78■■■□□ 2.36
CDKN3-204ENST00000442975 CRYBG1Q9Y4K1 1723 aa29.78■■■□□ 2.36
CDKN3-204ENST00000442975 KIAA0232Q92628 1395 aa29.77■■■□□ 2.36
CDKN3-204ENST00000442975 BTG4Q9NY30 223 aa29.77■■■□□ 2.36
CDKN3-204ENST00000442975 VPS72Q15906 364 aa29.76■■■□□ 2.35
CDKN3-204ENST00000442975 BRD4O60885 1362 aaPredicted RBP29.76■■■□□ 2.35
CDKN3-204ENST00000442975 PHRF1Q9P1Y6 1649 aaKnown RBP29.75■■■□□ 2.35
CDKN3-204ENST00000442975 NWD2Q9ULI1 1742 aa29.75■■■□□ 2.35
CDKN3-204ENST00000442975 GLI3P10071 1580 aa29.74■■■□□ 2.35
CDKN3-204ENST00000442975 ZC3H6P61129 1189 aaKnown RBP29.74■■■□□ 2.35
CDKN3-204ENST00000442975 CCER1Q8TC90 406 aaPredicted RBP29.74■■■□□ 2.35
CDKN3-204ENST00000442975 COL14A1Q05707 1796 aaKnown RBP29.74■■■□□ 2.35
CDKN3-204ENST00000442975 UPF1Q92900 1129 aaKnown RBP eCLIP29.73■■■□□ 2.35
CDKN3-204ENST00000442975 USP19O94966 1318 aa29.72■■■□□ 2.35
CDKN3-204ENST00000442975 CHRNA2Q15822 529 aa29.72■■■□□ 2.35
CDKN3-204ENST00000442975 NRKQ7Z2Y5 1582 aa29.72■■■□□ 2.35
CDKN3-204ENST00000442975 ST20-MTHFSA0A0A6YYL1 179 aa29.71■■■□□ 2.35
CDKN3-204ENST00000442975 NLRP13Q86W25 1043 aa29.71■■■□□ 2.35
CDKN3-204ENST00000442975 TMC1Q8TDI8 760 aa29.7■■■□□ 2.35
CDKN3-204ENST00000442975 USP47Q96K76 1375 aa29.69■■■□□ 2.34
CDKN3-204ENST00000442975 NLRP6P59044 892 aa29.69■■■□□ 2.34
CDKN3-204ENST00000442975 NRAPQ86VF7 1730 aa29.68■■■□□ 2.34
CDKN3-204ENST00000442975 SSH2Q76I76 1423 aa29.68■■■□□ 2.34
CDKN3-204ENST00000442975 KTN1Q86UP2 1357 aaKnown RBP29.67■■■□□ 2.34
CDKN3-204ENST00000442975 ZNF692Q9BU19 519 aaPredicted RBP29.67■■■□□ 2.34
CDKN3-204ENST00000442975 TIMELESSQ9UNS1 1208 aa29.67■■■□□ 2.34
CDKN3-204ENST00000442975 A0A0G2JS52 829 aa29.66■■■□□ 2.34
CDKN3-204ENST00000442975 MYT1Q01538 1121 aa29.66■■■□□ 2.34
CDKN3-204ENST00000442975 TTC21BQ7Z4L5 1316 aa29.66■■■□□ 2.34
CDKN3-204ENST00000442975 CPSF1Q10570 1443 aaKnown RBP29.65■■■□□ 2.34
CDKN3-204ENST00000442975 TESK2Q96S53 571 aa29.65■■■□□ 2.34
CDKN3-204ENST00000442975 ZBTB7CA1YPR0 619 aa29.64■■■□□ 2.34
CDKN3-204ENST00000442975 GCP02774 474 aa29.64■■■□□ 2.34
CDKN3-204ENST00000442975 STRN4Q9NRL3 753 aa29.64■■■□□ 2.34
CDKN3-204ENST00000442975 SEPT12Q8IYM1 358 aa29.63■■■□□ 2.33
CDKN3-204ENST00000442975 CPDO75976 1380 aa29.63■■■□□ 2.33
CDKN3-204ENST00000442975 PIK3C2AO00443 1686 aa29.63■■■□□ 2.33
CDKN3-204ENST00000442975 FAM98CQ17RN3 349 aaKnown RBP29.61■■■□□ 2.33
CDKN3-204ENST00000442975 TTC21AQ8NDW8 1320 aa29.61■■■□□ 2.33
CDKN3-204ENST00000442975 HDGFL2Q7Z4V5 671 aaPredicted RBP29.6■■■□□ 2.33
CDKN3-204ENST00000442975 SLC12A5Q9H2X9 1139 aa29.6■■■□□ 2.33
CDKN3-204ENST00000442975 AKAP12Q02952 1782 aa29.59■■■□□ 2.33
CDKN3-204ENST00000442975 SUGP2Q8IX01 1082 aaKnown RBP eCLIP29.59■■■□□ 2.33
CDKN3-204ENST00000442975 SPATA31A5Q5VU36 1347 aa29.59■■■□□ 2.33
CDKN3-204ENST00000442975 SPATA31A7Q8IWB4 1347 aa29.59■■■□□ 2.33
CDKN3-204ENST00000442975 CD163L1Q9NR16 1453 aa29.59■■■□□ 2.33
CDKN3-204ENST00000442975 SLIT3O75094 1523 aa29.59■■■□□ 2.33
CDKN3-204ENST00000442975 SOX12O15370 315 aa29.58■■■□□ 2.33
CDKN3-204ENST00000442975 SLC24A1O60721 1099 aa29.56■■■□□ 2.32
CDKN3-204ENST00000442975 EVA1CP58658 441 aa29.56■■■□□ 2.32
CDKN3-204ENST00000442975 PUS7Q96PZ0 661 aaKnown RBP29.56■■■□□ 2.32
CDKN3-204ENST00000442975 TERF2IPQ9NYB0 399 aa29.56■■■□□ 2.32
CDKN3-204ENST00000442975 A0A1W2PP64 1363 aa29.55■■■□□ 2.32
CDKN3-204ENST00000442975 MON2Q7Z3U7 1717 aa29.54■■■□□ 2.32
CDKN3-204ENST00000442975 TMF1P82094 1093 aa29.54■■■□□ 2.32
CDKN3-204ENST00000442975 CAMTA1Q9Y6Y1 1673 aa29.53■■■□□ 2.32
CDKN3-204ENST00000442975 NINLQ9Y2I6 1382 aa29.53■■■□□ 2.32
CDKN3-204ENST00000442975 EP400Q96L91 3159 aa29.53■■■□□ 2.32
CDKN3-204ENST00000442975 ONECUT3O60422 494 aaPredicted RBP29.52■■■□□ 2.32
CDKN3-204ENST00000442975 USP35Q9P2H5 1018 aa29.52■■■□□ 2.32
CDKN3-204ENST00000442975 LMO7Q8WWI1 1683 aa29.52■■■□□ 2.32
CDKN3-204ENST00000442975 SPATA31A1Q5TZJ5 1347 aa29.51■■■□□ 2.32
CDKN3-204ENST00000442975 NME9Q86XW9 330 aa29.51■■■□□ 2.31
CDKN3-204ENST00000442975 EDC4Q6P2E9 1401 aaKnown RBP29.51■■■□□ 2.31
CDKN3-204ENST00000442975 LARP1Q6PKG0 1096 aaKnown RBP29.5■■■□□ 2.31
CDKN3-204ENST00000442975 KRT27Q7Z3Y8 459 aa29.5■■■□□ 2.31
CDKN3-204ENST00000442975 KCNH5Q8NCM2 988 aa29.5■■■□□ 2.31
CDKN3-204ENST00000442975 ZRANB1Q9UGI0 708 aa29.5■■■□□ 2.31
CDKN3-204ENST00000442975 AATKQ6ZMQ8 1374 aa29.49■■■□□ 2.31
CDKN3-204ENST00000442975 COL5A2P05997 1499 aaPredicted RBP29.48■■■□□ 2.31
CDKN3-204ENST00000442975 USP31Q70CQ4 1352 aa29.45■■■□□ 2.31
CDKN3-204ENST00000442975 NFAT5O94916 1531 aa29.44■■■□□ 2.3
CDKN3-204ENST00000442975 BRWD3Q6RI45 1802 aa29.43■■■□□ 2.3
CDKN3-204ENST00000442975 CDCA8Q53HL2 280 aa29.43■■■□□ 2.3
CDKN3-204ENST00000442975 ARHGEF25Q86VW2 580 aa29.43■■■□□ 2.3
CDKN3-204ENST00000442975 THSD7AQ9UPZ6 1657 aa29.43■■■□□ 2.3
CDKN3-204ENST00000442975 ANKRD36BQ8N2N9 1353 aa29.41■■■□□ 2.3
CDKN3-204ENST00000442975 BLMP54132 1417 aaPredicted RBP29.4■■■□□ 2.3
CDKN3-204ENST00000442975 TCP11L2Q8N4U5 519 aa29.4■■■□□ 2.3
CDKN3-204ENST00000442975 CRB1P82279 1406 aa29.39■■■□□ 2.3
CDKN3-204ENST00000442975 AXIN2Q9Y2T1 843 aa29.39■■■□□ 2.3
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms