RNA–Protein interactions for RNA: ENST00000442232.1

TTC28-203, Transcript of tetratricopeptide repeat domain 28, humanhuman

TSL 2

Gene TTC28, Length 499 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-203ENST00000442232 MYT1Q01538 1121 aa16.98■□□□□ 0.31
TTC28-203ENST00000442232 CDK19Q9BWU1 502 aa16.98■□□□□ 0.31
TTC28-203ENST00000442232 QRICH2Q9H0J4 1663 aa16.97■□□□□ 0.31
TTC28-203ENST00000442232 PHRF1Q9P1Y6 1649 aaKnown RBP16.96■□□□□ 0.31
TTC28-203ENST00000442232 FAM83GA6ND36 823 aa16.96■□□□□ 0.31
TTC28-203ENST00000442232 SEPT12Q8IYM1 358 aa16.96■□□□□ 0.31
TTC28-203ENST00000442232 CENPJQ9HC77 1338 aaPredicted RBP16.96■□□□□ 0.3
TTC28-203ENST00000442232 BTG4Q9NY30 223 aa16.95■□□□□ 0.3
TTC28-203ENST00000442232 SRPK2P78362 688 aaKnown RBP16.94■□□□□ 0.3
TTC28-203ENST00000442232 SF3B2Q13435 895 aaKnown RBP16.94■□□□□ 0.3
TTC28-203ENST00000442232 NBPF1Q3BBV0 1214 aa16.94■□□□□ 0.3
TTC28-203ENST00000442232 PRDM11Q9NQV5 511 aa16.94■□□□□ 0.3
TTC28-203ENST00000442232 CCDC61Q9Y6R9 512 aa16.94■□□□□ 0.3
TTC28-203ENST00000442232 BLMP54132 1417 aaPredicted RBP16.93■□□□□ 0.3
TTC28-203ENST00000442232 EP400Q96L91 3159 aa16.93■□□□□ 0.3
TTC28-203ENST00000442232 ACEP12821 1306 aa16.93■□□□□ 0.3
TTC28-203ENST00000442232 POLR3AO14802 1390 aaPredicted RBP16.92■□□□□ 0.3
TTC28-203ENST00000442232 ZRANB1Q9UGI0 708 aa16.92■□□□□ 0.3
TTC28-203ENST00000442232 TRPM1Q7Z4N2 1603 aa16.92■□□□□ 0.3
TTC28-203ENST00000442232 KRT27Q7Z3Y8 459 aa16.91■□□□□ 0.3
TTC28-203ENST00000442232 PPIP5K1Q6PFW1 1433 aa16.9■□□□□ 0.3
TTC28-203ENST00000442232 FAM98CQ17RN3 349 aaKnown RBP16.9■□□□□ 0.3
TTC28-203ENST00000442232 NBPF8Q3BBV2 869 aa16.9■□□□□ 0.3
TTC28-203ENST00000442232 L3MBTL2Q969R5 705 aa16.9■□□□□ 0.3
TTC28-203ENST00000442232 PLEKHG3A1L390 1219 aa16.89■□□□□ 0.29
TTC28-203ENST00000442232 ONECUT3O60422 494 aaPredicted RBP16.89■□□□□ 0.29
TTC28-203ENST00000442232 NUTM2GQ5VZR2 741 aa16.89■□□□□ 0.29
TTC28-203ENST00000442232 KIAA0232Q92628 1395 aa16.89■□□□□ 0.29
TTC28-203ENST00000442232 NEUROD1Q13562 356 aa16.88■□□□□ 0.29
TTC28-203ENST00000442232 NRKQ7Z2Y5 1582 aa16.88■□□□□ 0.29
TTC28-203ENST00000442232 ROCK2O75116 1388 aaKnown RBP16.88■□□□□ 0.29
TTC28-203ENST00000442232 ABTB2Q8N961 1025 aa16.87■□□□□ 0.29
TTC28-203ENST00000442232 BRD4O60885 1362 aaPredicted RBP16.87■□□□□ 0.29
TTC28-203ENST00000442232 ZC3H6P61129 1189 aaKnown RBP16.86■□□□□ 0.29
TTC28-203ENST00000442232 SIN3AQ96ST3 1273 aa16.86■□□□□ 0.29
TTC28-203ENST00000442232 CABP2Q9NPB3 220 aa16.86■□□□□ 0.29
TTC28-203ENST00000442232 STRN4Q9NRL3 753 aa16.86■□□□□ 0.29
TTC28-203ENST00000442232 SPATA31A5Q5VU36 1347 aa16.86■□□□□ 0.29
TTC28-203ENST00000442232 SPATA31A7Q8IWB4 1347 aa16.86■□□□□ 0.29
TTC28-203ENST00000442232 RGPD1P0DJD0 1748 aa16.85■□□□□ 0.29
TTC28-203ENST00000442232 CHRNA2Q15822 529 aa16.85■□□□□ 0.29
TTC28-203ENST00000442232 EVC2Q86UK5 1308 aa16.85■□□□□ 0.29
TTC28-203ENST00000442232 THSD7AQ9UPZ6 1657 aa16.85■□□□□ 0.29
TTC28-203ENST00000442232 NLRP13Q86W25 1043 aa16.84■□□□□ 0.29
TTC28-203ENST00000442232 EVA1CP58658 441 aa16.83■□□□□ 0.28
TTC28-203ENST00000442232 BAG6P46379 1132 aa16.82■□□□□ 0.28
TTC28-203ENST00000442232 USP6P35125 1406 aa16.81■□□□□ 0.28
TTC28-203ENST00000442232 CPDO75976 1380 aa16.81■□□□□ 0.28
TTC28-203ENST00000442232 USP19O94966 1318 aa16.81■□□□□ 0.28
TTC28-203ENST00000442232 SPATA31A1Q5TZJ5 1347 aa16.81■□□□□ 0.28
TTC28-203ENST00000442232 DEFB132Q7Z7B7 95 aa16.81■□□□□ 0.28
TTC28-203ENST00000442232 CABP1Q9NZU7 370 aa16.81■□□□□ 0.28
TTC28-203ENST00000442232 SSH2Q76I76 1423 aa16.8■□□□□ 0.28
TTC28-203ENST00000442232 LMO7Q8WWI1 1683 aa16.79■□□□□ 0.28
TTC28-203ENST00000442232 ZBTB7CA1YPR0 619 aa16.79■□□□□ 0.28
TTC28-203ENST00000442232 AKAP12Q02952 1782 aa16.79■□□□□ 0.28
TTC28-203ENST00000442232 GCP02774 474 aa16.78■□□□□ 0.28
TTC28-203ENST00000442232 USP35Q9P2H5 1018 aa16.78■□□□□ 0.28
TTC28-203ENST00000442232 TONSLQ96HA7 1378 aa16.77■□□□□ 0.28
TTC28-203ENST00000442232 NLRP6P59044 892 aa16.77■□□□□ 0.28
TTC28-203ENST00000442232 PIK3C2AO00443 1686 aa16.77■□□□□ 0.28
TTC28-203ENST00000442232 CAMTA1Q9Y6Y1 1673 aa16.77■□□□□ 0.28
TTC28-203ENST00000442232 TNS1Q9HBL0 1735 aaKnown RBP16.76■□□□□ 0.27
TTC28-203ENST00000442232 SLIT3O75094 1523 aa16.75■□□□□ 0.27
TTC28-203ENST00000442232 PDE3BQ13370 1112 aa16.75■□□□□ 0.27
TTC28-203ENST00000442232 FAM182BQ5T319 152 aa16.75■□□□□ 0.27
TTC28-203ENST00000442232 ZNF692Q9BU19 519 aaPredicted RBP16.75■□□□□ 0.27
TTC28-203ENST00000442232 BARGINQ6ZT62 677 aa16.74■□□□□ 0.27
TTC28-203ENST00000442232 TCP11L2Q8N4U5 519 aa16.74■□□□□ 0.27
TTC28-203ENST00000442232 CARD11Q9BXL7 1154 aa16.74■□□□□ 0.27
TTC28-203ENST00000442232 COL5A2P05997 1499 aaPredicted RBP16.73■□□□□ 0.27
TTC28-203ENST00000442232 LARP1Q6PKG0 1096 aaKnown RBP16.73■□□□□ 0.27
TTC28-203ENST00000442232 FAM196AQ6ZSG2 479 aa16.73■□□□□ 0.27
TTC28-203ENST00000442232 THRAP3Q9Y2W1 955 aaKnown RBP16.73■□□□□ 0.27
TTC28-203ENST00000442232 PARP4Q9UKK3 1724 aaKnown RBP16.73■□□□□ 0.27
TTC28-203ENST00000442232 CRB1P82279 1406 aa16.72■□□□□ 0.27
TTC28-203ENST00000442232 MON2Q7Z3U7 1717 aa16.72■□□□□ 0.27
TTC28-203ENST00000442232 SBNO2Q9Y2G9 1366 aa16.72■□□□□ 0.27
TTC28-203ENST00000442232 TTC21AQ8NDW8 1320 aa16.71■□□□□ 0.27
TTC28-203ENST00000442232 KCNH5Q8NCM2 988 aa16.71■□□□□ 0.27
TTC28-203ENST00000442232 AATKQ6ZMQ8 1374 aa16.71■□□□□ 0.27
TTC28-203ENST00000442232 KTN1Q86UP2 1357 aaKnown RBP16.71■□□□□ 0.27
TTC28-203ENST00000442232 TTC21BQ7Z4L5 1316 aa16.7■□□□□ 0.26
TTC28-203ENST00000442232 DISP2A7MBM2 1401 aa16.7■□□□□ 0.26
TTC28-203ENST00000442232 EN1Q05925 392 aaPredicted RBP16.7■□□□□ 0.26
TTC28-203ENST00000442232 CPSF1Q10570 1443 aaKnown RBP16.7■□□□□ 0.26
TTC28-203ENST00000442232 WNK3Q9BYP7 1800 aa16.68■□□□□ 0.26
TTC28-203ENST00000442232 LRP5O75197 1615 aa16.68■□□□□ 0.26
TTC28-203ENST00000442232 TRIM37O94972 964 aa16.68■□□□□ 0.26
TTC28-203ENST00000442232 COL18A1P39060 1754 aa16.67■□□□□ 0.26
TTC28-203ENST00000442232 RGPD5Q99666 1765 aa16.67■□□□□ 0.26
TTC28-203ENST00000442232 C11orf95C9JLR9 678 aaPredicted RBP16.67■□□□□ 0.26
TTC28-203ENST00000442232 SOX12O15370 315 aa16.67■□□□□ 0.26
TTC28-203ENST00000442232 TOM1L2Q6ZVM7 507 aa16.67■□□□□ 0.26
TTC28-203ENST00000442232 PARD3Q8TEW0 1356 aa16.66■□□□□ 0.26
TTC28-203ENST00000442232 PSDA5PKW4 1024 aaPredicted RBP16.66■□□□□ 0.26
TTC28-203ENST00000442232 APBA3O96018 575 aa16.66■□□□□ 0.26
TTC28-203ENST00000442232 HDGFL2Q7Z4V5 671 aaPredicted RBP16.66■□□□□ 0.26
TTC28-203ENST00000442232 TMC1Q8TDI8 760 aa16.66■□□□□ 0.26
TTC28-203ENST00000442232 LRRC37A3O60309 1634 aa16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms