RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 WDR63Q8IWG1 891 aa21.12■□□□□ 0.97
CLCNKA-203ENST00000439316 TCP11L2Q8N4U5 519 aa21.12■□□□□ 0.97
CLCNKA-203ENST00000439316 PANK1Q8TE04 598 aa21.12■□□□□ 0.97
CLCNKA-203ENST00000439316 DAXXQ9UER7 740 aaPredicted RBP21.12■□□□□ 0.97
CLCNKA-203ENST00000439316 MINK1Q8N4C8 1332 aaPredicted RBP21.11■□□□□ 0.97
CLCNKA-203ENST00000439316 CANXP27824 592 aaKnown RBP21.11■□□□□ 0.97
CLCNKA-203ENST00000439316 SLC4A3P48751 1232 aa21.11■□□□□ 0.97
CLCNKA-203ENST00000439316 ANKRD36BQ8N2N9 1353 aa21.11■□□□□ 0.97
CLCNKA-203ENST00000439316 RARSP54136 660 aaKnown RBP21.1■□□□□ 0.97
CLCNKA-203ENST00000439316 CCDC27Q2M243 656 aa21.1■□□□□ 0.97
CLCNKA-203ENST00000439316 NCBP3Q53F19 620 aaKnown RBP21.1■□□□□ 0.97
CLCNKA-203ENST00000439316 WAPLQ7Z5K2 1190 aa21.1■□□□□ 0.97
CLCNKA-203ENST00000439316 COG6Q9Y2V7 657 aa21.1■□□□□ 0.97
CLCNKA-203ENST00000439316 ADGRB2O60241 1585 aa21.1■□□□□ 0.97
CLCNKA-203ENST00000439316 MAPK8IP3Q9UPT6 1336 aa21.1■□□□□ 0.97
CLCNKA-203ENST00000439316 TNNT2P45379 298 aaPredicted RBP21.1■□□□□ 0.97
CLCNKA-203ENST00000439316 AAMPQ13685 434 aa21.1■□□□□ 0.97
CLCNKA-203ENST00000439316 SLC26A8Q96RN1 970 aa21.1■□□□□ 0.97
CLCNKA-203ENST00000439316 ZNF142P52746 1687 aaPredicted RBP21.1■□□□□ 0.97
CLCNKA-203ENST00000439316 NFKBIBQ15653 356 aa21.09■□□□□ 0.97
CLCNKA-203ENST00000439316 MTHFSP49914 203 aa21.08■□□□□ 0.97
CLCNKA-203ENST00000439316 CFAP53Q96M91 514 aa21.08■□□□□ 0.97
CLCNKA-203ENST00000439316 CABP2Q9NPB3 220 aa21.08■□□□□ 0.97
CLCNKA-203ENST00000439316 RRP7AQ9Y3A4 280 aaKnown RBP21.08■□□□□ 0.97
CLCNKA-203ENST00000439316 MED14O60244 1454 aa21.07■□□□□ 0.96
CLCNKA-203ENST00000439316 KNDC1Q76NI1 1749 aa21.07■□□□□ 0.96
CLCNKA-203ENST00000439316 NEUROD2Q15784 382 aa21.06■□□□□ 0.96
CLCNKA-203ENST00000439316 USP19O94966 1318 aa21.05■□□□□ 0.96
CLCNKA-203ENST00000439316 SRPK2P78362 688 aaKnown RBP21.05■□□□□ 0.96
CLCNKA-203ENST00000439316 TECPR2O15040 1411 aa21.05■□□□□ 0.96
CLCNKA-203ENST00000439316 FRAT1Q92837 279 aaPredicted RBP21.05■□□□□ 0.96
CLCNKA-203ENST00000439316 PMFBP1Q8TBY8 1022 aa21.03■□□□□ 0.96
CLCNKA-203ENST00000439316 TBX22Q9Y458 520 aa21.03■□□□□ 0.96
CLCNKA-203ENST00000439316 CPS1P31327 1500 aa21.02■□□□□ 0.96
CLCNKA-203ENST00000439316 FAM135BQ49AJ0 1406 aa21.01■□□□□ 0.95
CLCNKA-203ENST00000439316 RLBP1P12271 317 aa21.01■□□□□ 0.95
CLCNKA-203ENST00000439316 SIRT1Q96EB6 747 aa21.01■□□□□ 0.95
CLCNKA-203ENST00000439316 CDK19Q9BWU1 502 aa21.01■□□□□ 0.95
CLCNKA-203ENST00000439316 ANKLE2Q86XL3 938 aa21.01■□□□□ 0.95
CLCNKA-203ENST00000439316 MYH16Q9H6N6 1097 aa21.01■□□□□ 0.95
CLCNKA-203ENST00000439316 ROBO2Q9HCK4 1378 aa21.01■□□□□ 0.95
CLCNKA-203ENST00000439316 PTPRUQ92729 1446 aa21■□□□□ 0.95
CLCNKA-203ENST00000439316 GSE1Q14687 1217 aa20.99■□□□□ 0.95
CLCNKA-203ENST00000439316 DIP2AQ14689 1571 aa20.99■□□□□ 0.95
CLCNKA-203ENST00000439316 TNNQ9UQP3 1299 aa20.99■□□□□ 0.95
CLCNKA-203ENST00000439316 PCDHB15Q9Y5E8 787 aa20.99■□□□□ 0.95
CLCNKA-203ENST00000439316 COL3A1P02461 1466 aaPredicted RBP20.98■□□□□ 0.95
CLCNKA-203ENST00000439316 ANKRD26Q9UPS8 1709 aa20.98■□□□□ 0.95
CLCNKA-203ENST00000439316 ATAD2Q6PL18 1390 aa20.98■□□□□ 0.95
CLCNKA-203ENST00000439316 AMOTL2Q9Y2J4 779 aa20.97■□□□□ 0.95
CLCNKA-203ENST00000439316 U2AF1L5P0DN76 240 aaPredicted RBP20.97■□□□□ 0.95
CLCNKA-203ENST00000439316 U2AF1Q01081 240 aaKnown RBP eCLIP20.97■□□□□ 0.95
CLCNKA-203ENST00000439316 A0A1W2PP64 1363 aa20.96■□□□□ 0.95
CLCNKA-203ENST00000439316 SEC24BO95487 1268 aa20.96■□□□□ 0.95
CLCNKA-203ENST00000439316 CT47B1P0C2W7 299 aaPredicted RBP20.96■□□□□ 0.95
CLCNKA-203ENST00000439316 BCL2L13Q9BXK5 485 aa20.96■□□□□ 0.95
CLCNKA-203ENST00000439316 WASLO00401 505 aaPredicted RBP20.94■□□□□ 0.94
CLCNKA-203ENST00000439316 MVPQ14764 893 aaKnown RBP20.93■□□□□ 0.94
CLCNKA-203ENST00000439316 PDZRN3Q9UPQ7 1066 aa20.93■□□□□ 0.94
CLCNKA-203ENST00000439316 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.92■□□□□ 0.94
CLCNKA-203ENST00000439316 IL27Q8NEV9 243 aa20.92■□□□□ 0.94
CLCNKA-203ENST00000439316 RWDD1Q9H446 243 aaPredicted RBP20.92■□□□□ 0.94
CLCNKA-203ENST00000439316 PLEKHF1Q96S99 279 aa20.92■□□□□ 0.94
CLCNKA-203ENST00000439316 FRAT2O75474 233 aaPredicted RBP20.91■□□□□ 0.94
CLCNKA-203ENST00000439316 ZKSCAN2Q63HK3 967 aa20.91■□□□□ 0.94
CLCNKA-203ENST00000439316 CABP1Q9NZU7 370 aa20.9■□□□□ 0.94
CLCNKA-203ENST00000439316 XRN1Q8IZH2 1706 aaKnown RBP20.9■□□□□ 0.94
CLCNKA-203ENST00000439316 CD163L1Q9NR16 1453 aa20.9■□□□□ 0.94
CLCNKA-203ENST00000439316 PTCH1Q13635 1447 aa20.89■□□□□ 0.94
CLCNKA-203ENST00000439316 BECN1Q14457 450 aa20.89■□□□□ 0.93
CLCNKA-203ENST00000439316 PIK3R4Q99570 1358 aa20.89■□□□□ 0.93
CLCNKA-203ENST00000439316 DZIP1LQ8IYY4 767 aaKnown RBP20.88■□□□□ 0.93
CLCNKA-203ENST00000439316 TERF2IPQ9NYB0 399 aa20.88■□□□□ 0.93
CLCNKA-203ENST00000439316 KCNA6P17658 529 aa20.88■□□□□ 0.93
CLCNKA-203ENST00000439316 KDM4FA0A1W2PPD8 638 aa20.87■□□□□ 0.93
CLCNKA-203ENST00000439316 TMPOP42166 694 aaKnown RBP20.87■□□□□ 0.93
CLCNKA-203ENST00000439316 NPHP4O75161 1426 aaPredicted RBP20.87■□□□□ 0.93
CLCNKA-203ENST00000439316 IL16Q14005 1332 aa20.87■□□□□ 0.93
CLCNKA-203ENST00000439316 NCKAP5LQ9HCH0 1330 aa20.87■□□□□ 0.93
CLCNKA-203ENST00000439316 TSR2Q969E8 191 aaKnown RBP20.86■□□□□ 0.93
CLCNKA-203ENST00000439316 TBC1D32Q96NH3 1257 aa20.86■□□□□ 0.93
CLCNKA-203ENST00000439316 TRIM35Q9UPQ4 493 aa20.86■□□□□ 0.93
CLCNKA-203ENST00000439316 CHD2O14647 1828 aaKnown RBP20.86■□□□□ 0.93
CLCNKA-203ENST00000439316 NUDT16Q96DE0 195 aaKnown RBP20.86■□□□□ 0.93
CLCNKA-203ENST00000439316 GGNBP2Q9H3C7 697 aa20.86■□□□□ 0.93
CLCNKA-203ENST00000439316 FTSJ3Q8IY81 847 aaKnown RBP20.85■□□□□ 0.93
CLCNKA-203ENST00000439316 EXOSC9Q06265 439 aaKnown RBP20.85■□□□□ 0.93
CLCNKA-203ENST00000439316 HDGFL2Q7Z4V5 671 aaPredicted RBP20.85■□□□□ 0.93
CLCNKA-203ENST00000439316 UPF2Q9HAU5 1272 aaKnown RBP20.85■□□□□ 0.93
CLCNKA-203ENST00000439316 CDC42BPGQ6DT37 1551 aa20.84■□□□□ 0.93
CLCNKA-203ENST00000439316 KIF20BQ96Q89 1820 aa20.84■□□□□ 0.93
CLCNKA-203ENST00000439316 U2SURPO15042 1029 aaKnown RBP20.84■□□□□ 0.93
CLCNKA-203ENST00000439316 SMC4Q9NTJ3 1288 aa20.84■□□□□ 0.93
CLCNKA-203ENST00000439316 PPIP5K1Q6PFW1 1433 aa20.83■□□□□ 0.93
CLCNKA-203ENST00000439316 FYB1O15117 783 aa20.83■□□□□ 0.93
CLCNKA-203ENST00000439316 CCDC61Q9Y6R9 512 aa20.83■□□□□ 0.92
CLCNKA-203ENST00000439316 PNPLA6Q8IY17 1366 aa20.83■□□□□ 0.92
CLCNKA-203ENST00000439316 PRR36Q9H6K5 1346 aa20.82■□□□□ 0.92
CLCNKA-203ENST00000439316 ATP7BP35670 1465 aa20.82■□□□□ 0.92
CLCNKA-203ENST00000439316 TRIM27P14373 513 aa20.82■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms