RNA–Protein interactions for RNA: ENST00000439160.6

TCOF1-205, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,644 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-205ENST00000439160 FOXO3O43524 673 aa15.09■□□□□ 0.01
TCOF1-205ENST00000439160 SURF6O75683 361 aaKnown RBP15.09■□□□□ 0.01
TCOF1-205ENST00000439160 GNAI3P08754 354 aa15.09■□□□□ 0.01
TCOF1-205ENST00000439160 C22orf23Q9BZE7 217 aa15.09■□□□□ 0.01
TCOF1-205ENST00000439160 TATP17735 454 aaPredicted RBP15.09■□□□□ 0.01
TCOF1-205ENST00000439160 C20orf194Q5TEA3 1177 aa15.09■□□□□ 0.01
TCOF1-205ENST00000439160 MCM10Q7L590 875 aa15.08■□□□□ 0
TCOF1-205ENST00000439160 PPP6R1Q9UPN7 881 aa15.08■□□□□ 0
TCOF1-205ENST00000439160 ZNF518AQ6AHZ1 1483 aa15.08■□□□□ 0
TCOF1-205ENST00000439160 PRAG1Q86YV5 1406 aa15.08■□□□□ 0
TCOF1-205ENST00000439160 MVPQ14764 893 aaKnown RBP15.08■□□□□ 0
TCOF1-205ENST00000439160 TMX4Q9H1E5 349 aaPredicted RBP15.08■□□□□ 0
TCOF1-205ENST00000439160 CT47B1P0C2W7 299 aaPredicted RBP15.07■□□□□ 0
TCOF1-205ENST00000439160 RUFY2Q8WXA3 655 aa15.07■□□□□ 0
TCOF1-205ENST00000439160 PRDM11Q9NQV5 511 aa15.07■□□□□ 0
TCOF1-205ENST00000439160 HSP90AB4PQ58FF6 505 aa15.07■□□□□ 0
TCOF1-205ENST00000439160 TOM1L2Q6ZVM7 507 aa15.07■□□□□ 0
TCOF1-205ENST00000439160 PTMSP20962 102 aa15.07■□□□□ 0
TCOF1-205ENST00000439160 INTS3Q68E01 1043 aaKnown RBP15.07■□□□□ 0
TCOF1-205ENST00000439160 DDX54Q8TDD1 881 aaKnown RBP15.06■□□□□ 0
TCOF1-205ENST00000439160 RALGAPBQ86X10 1494 aa15.06■□□□□ 0
TCOF1-205ENST00000439160 TESK2Q96S53 571 aa15.06■□□□□ 0
TCOF1-205ENST00000439160 NEUROD6Q96NK8 337 aa15.05■□□□□ 0
TCOF1-205ENST00000439160 ZKSCAN1P17029 563 aaPredicted RBP15.05■□□□□ -0
TCOF1-205ENST00000439160 AMER1Q5JTC6 1135 aaPredicted RBP15.05■□□□□ -0
TCOF1-205ENST00000439160 PBRM1Q86U86 1689 aa15.05■□□□□ -0
TCOF1-205ENST00000439160 DRC7Q8IY82 874 aa15.05■□□□□ -0
TCOF1-205ENST00000439160 GOLGA6L3A6NEY3 463 aa15.04■□□□□ -0
TCOF1-205ENST00000439160 PHF8Q9UPP1 1060 aa15.04■□□□□ -0
TCOF1-205ENST00000439160 ABCC2Q92887 1545 aa15.04■□□□□ -0
TCOF1-205ENST00000439160 MSH5O43196 834 aa15.04■□□□□ -0
TCOF1-205ENST00000439160 USHBP1Q8N6Y0 703 aa15.04■□□□□ -0
TCOF1-205ENST00000439160 SSH1Q8WYL5 1049 aa15.04■□□□□ -0
TCOF1-205ENST00000439160 G3V3G9 751 aa15.04■□□□□ -0
TCOF1-205ENST00000439160 DCAF8Q5TAQ9 597 aa15.04■□□□□ -0
TCOF1-205ENST00000439160 SKAP1Q86WV1 359 aa15.04■□□□□ -0
TCOF1-205ENST00000439160 SYAP1Q96A49 352 aaPredicted RBP15.04■□□□□ -0
TCOF1-205ENST00000439160 HTATSF1O43719 755 aaKnown RBP15.04■□□□□ -0
TCOF1-205ENST00000439160 GNAI2P04899 355 aa15.04■□□□□ -0
TCOF1-205ENST00000439160 RBM42Q9BTD8 480 aaKnown RBP15.04■□□□□ -0
TCOF1-205ENST00000439160 RARSP54136 660 aaKnown RBP15.03■□□□□ -0
TCOF1-205ENST00000439160 CLASRPQ8N2M8 674 aaKnown RBP15.03■□□□□ -0
TCOF1-205ENST00000439160 TMEM57Q8N5G2 664 aa15.03■□□□□ -0
TCOF1-205ENST00000439160 PZPP20742 1482 aa15.03■□□□□ -0
TCOF1-205ENST00000439160 CDC45O75419 566 aa15.03■□□□□ -0
TCOF1-205ENST00000439160 ERC2O15083 957 aa15.02■□□□□ -0
TCOF1-205ENST00000439160 MSNP26038 577 aaKnown RBP15.02■□□□□ -0
TCOF1-205ENST00000439160 MEX3CQ5U5Q3 659 aaKnown RBP15.02■□□□□ -0
TCOF1-205ENST00000439160 DUSP27Q5VZP5 1158 aa15.02■□□□□ -0
TCOF1-205ENST00000439160 DDX49Q9Y6V7 483 aaKnown RBP15.02■□□□□ -0
TCOF1-205ENST00000439160 TNRQ92752 1358 aa15.02■□□□□ -0
TCOF1-205ENST00000439160 GOLGA6L6A8MZA4 724 aa15.02□□□□□ -0.01
TCOF1-205ENST00000439160 ABCC10Q5T3U5 1492 aa15.02□□□□□ -0.01
TCOF1-205ENST00000439160 FAM177BA6PVY3 158 aa15.02□□□□□ -0.01
TCOF1-205ENST00000439160 GCC1Q96CN9 775 aa15.01□□□□□ -0.01
TCOF1-205ENST00000439160 CABP4P57796 275 aa15.01□□□□□ -0.01
TCOF1-205ENST00000439160 MAGI3Q5TCQ9 1506 aa15.01□□□□□ -0.01
TCOF1-205ENST00000439160 SAMD9Q5K651 1589 aa15.01□□□□□ -0.01
TCOF1-205ENST00000439160 SHANK2Q9UPX8 1470 aa15.01□□□□□ -0.01
TCOF1-205ENST00000439160 APPP05067 770 aa15.01□□□□□ -0.01
TCOF1-205ENST00000439160 MYL6BP14649 208 aa15.01□□□□□ -0.01
TCOF1-205ENST00000439160 GNAT3A8MTJ3 354 aa15.01□□□□□ -0.01
TCOF1-205ENST00000439160 FYB1O15117 783 aa15.01□□□□□ -0.01
TCOF1-205ENST00000439160 KCNH5Q8NCM2 988 aa15.01□□□□□ -0.01
TCOF1-205ENST00000439160 BACH2Q9BYV9 841 aa15.01□□□□□ -0.01
TCOF1-205ENST00000439160 SRCIN1Q9C0H9 1055 aa15.01□□□□□ -0.01
TCOF1-205ENST00000439160 ACEP12821 1306 aa15□□□□□ -0.01
TCOF1-205ENST00000439160 NRDCO43847 1150 aa15□□□□□ -0.01
TCOF1-205ENST00000439160 DDX11L8A8MPP1 907 aa15□□□□□ -0.01
TCOF1-205ENST00000439160 CCT4P50991 539 aaKnown RBP15□□□□□ -0.01
TCOF1-205ENST00000439160 BTBD11A6QL63 1104 aa15□□□□□ -0.01
TCOF1-205ENST00000439160 CEP170Q5SW79 1584 aa15□□□□□ -0.01
TCOF1-205ENST00000439160 FAM184AQ8NB25 1140 aa14.99□□□□□ -0.01
TCOF1-205ENST00000439160 SPG7Q9UQ90 795 aa14.99□□□□□ -0.01
TCOF1-205ENST00000439160 TARBP1Q13395 1621 aaKnown RBP14.99□□□□□ -0.01
TCOF1-205ENST00000439160 NUTM2BA6NNL0 878 aaPredicted RBP14.99□□□□□ -0.01
TCOF1-205ENST00000439160 NUTM2EB1AL46 878 aaPredicted RBP14.99□□□□□ -0.01
TCOF1-205ENST00000439160 NUTM2AQ8IVF1 878 aaPredicted RBP14.99□□□□□ -0.01
TCOF1-205ENST00000439160 LRRFIP1Q32MZ4 808 aaKnown RBP14.99□□□□□ -0.01
TCOF1-205ENST00000439160 DNMT1P26358 1616 aaKnown RBP14.99□□□□□ -0.01
TCOF1-205ENST00000439160 H3BQV1 296 aa14.99□□□□□ -0.01
TCOF1-205ENST00000439160 IFFO2Q5TF58 517 aa14.99□□□□□ -0.01
TCOF1-205ENST00000439160 CHMP5Q9NZZ3 219 aa14.99□□□□□ -0.01
TCOF1-205ENST00000439160 KIF3AQ9Y496 699 aa14.99□□□□□ -0.01
TCOF1-205ENST00000439160 GSE1Q14687 1217 aa14.98□□□□□ -0.01
TCOF1-205ENST00000439160 NINLQ9Y2I6 1382 aa14.98□□□□□ -0.01
TCOF1-205ENST00000439160 UHRF1BP1LA0JNW5 1464 aa14.97□□□□□ -0.01
TCOF1-205ENST00000439160 VPS37DQ86XT2 251 aa14.97□□□□□ -0.01
TCOF1-205ENST00000439160 SF3A1Q15459 793 aaKnown RBP14.97□□□□□ -0.01
TCOF1-205ENST00000439160 FAM83GA6ND36 823 aa14.96□□□□□ -0.01
TCOF1-205ENST00000439160 RNF20Q5VTR2 975 aa14.96□□□□□ -0.01
TCOF1-205ENST00000439160 CSPP1Q1MSJ5 1256 aa14.96□□□□□ -0.01
TCOF1-205ENST00000439160 AEBP2Q6ZN18 517 aaPredicted RBP14.96□□□□□ -0.01
TCOF1-205ENST00000439160 SIL1Q9H173 461 aa14.96□□□□□ -0.01
TCOF1-205ENST00000439160 IFT57Q9NWB7 429 aa14.96□□□□□ -0.01
TCOF1-205ENST00000439160 CARD14Q9BXL6 1004 aa14.96□□□□□ -0.01
TCOF1-205ENST00000439160 NKTRP30414 1462 aaKnown RBP14.96□□□□□ -0.01
TCOF1-205ENST00000439160 CHD1LQ86WJ1 897 aa14.96□□□□□ -0.02
TCOF1-205ENST00000439160 FSD1Q9BTV5 496 aa14.96□□□□□ -0.02
TCOF1-205ENST00000439160 MCTP1Q6DN14 999 aa14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 93.5 ms