RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 GAS2L2Q8NHY3 880 aa18.43■□□□□ 0.54
PTPRF-206ENST00000429895 FANCD2Q9BXW9 1451 aa18.43■□□□□ 0.54
PTPRF-206ENST00000429895 MAGEC2Q9UBF1 373 aaPredicted RBP18.42■□□□□ 0.54
PTPRF-206ENST00000429895 MAP4K4O95819 1239 aaPredicted RBP18.42■□□□□ 0.54
PTPRF-206ENST00000429895 PRKAR2BP31323 418 aa18.42■□□□□ 0.54
PTPRF-206ENST00000429895 CCDC158Q5M9N0 1113 aa18.42■□□□□ 0.54
PTPRF-206ENST00000429895 ACBD3Q9H3P7 528 aa18.42■□□□□ 0.54
PTPRF-206ENST00000429895 CABP4P57796 275 aa18.41■□□□□ 0.54
PTPRF-206ENST00000429895 GNAI3P08754 354 aa18.41■□□□□ 0.54
PTPRF-206ENST00000429895 TATP17735 454 aaPredicted RBP18.41■□□□□ 0.54
PTPRF-206ENST00000429895 ZHX3Q9H4I2 956 aa18.41■□□□□ 0.54
PTPRF-206ENST00000429895 STK3Q13188 491 aa18.41■□□□□ 0.54
PTPRF-206ENST00000429895 SYCP1Q15431 976 aa18.41■□□□□ 0.54
PTPRF-206ENST00000429895 HSP90B2PQ58FF3 399 aa18.41■□□□□ 0.54
PTPRF-206ENST00000429895 ADAMTS8Q9UP79 889 aa18.41■□□□□ 0.54
PTPRF-206ENST00000429895 TOM1L2Q6ZVM7 507 aa18.4■□□□□ 0.54
PTPRF-206ENST00000429895 KIF7Q2M1P5 1343 aa18.4■□□□□ 0.54
PTPRF-206ENST00000429895 SMG6Q86US8 1419 aaKnown RBP18.4■□□□□ 0.54
PTPRF-206ENST00000429895 GNL3LQ9NVN8 582 aaKnown RBP18.4■□□□□ 0.54
PTPRF-206ENST00000429895 MYL6BP14649 208 aa18.4■□□□□ 0.54
PTPRF-206ENST00000429895 TXLNAP40222 546 aa18.4■□□□□ 0.54
PTPRF-206ENST00000429895 TRIM5Q9C035 493 aa18.4■□□□□ 0.54
PTPRF-206ENST00000429895 NEK4P51957 841 aa18.39■□□□□ 0.53
PTPRF-206ENST00000429895 KINO60870 393 aaKnown RBP18.39■□□□□ 0.53
PTPRF-206ENST00000429895 EXOSC9Q06265 439 aaKnown RBP18.39■□□□□ 0.53
PTPRF-206ENST00000429895 PDZRN4Q6ZMN7 1036 aaPredicted RBP18.38■□□□□ 0.53
PTPRF-206ENST00000429895 TCP11L2Q8N4U5 519 aa18.38■□□□□ 0.53
PTPRF-206ENST00000429895 RDXP35241 583 aaKnown RBP18.38■□□□□ 0.53
PTPRF-206ENST00000429895 TWISTNBQ3B726 338 aaPredicted RBP18.38■□□□□ 0.53
PTPRF-206ENST00000429895 FAM43AQ8N2R8 423 aa18.38■□□□□ 0.53
PTPRF-206ENST00000429895 PRAM1Q96QH2 718 aa18.38■□□□□ 0.53
PTPRF-206ENST00000429895 MYOM3Q5VTT5 1437 aa18.38■□□□□ 0.53
PTPRF-206ENST00000429895 PIP4K2BP78356 416 aa18.37■□□□□ 0.53
PTPRF-206ENST00000429895 IBSPP21815 317 aaPredicted RBP18.37■□□□□ 0.53
PTPRF-206ENST00000429895 CFAP70Q5T0N1 1121 aa18.37■□□□□ 0.53
PTPRF-206ENST00000429895 RUSC2Q8N2Y8 1516 aa18.37■□□□□ 0.53
PTPRF-206ENST00000429895 STK38Q15208 465 aa18.37■□□□□ 0.53
PTPRF-206ENST00000429895 FILIP1LQ4L180 1135 aa18.37■□□□□ 0.53
PTPRF-206ENST00000429895 CAVIN1Q6NZI2 390 aaKnown RBP18.37■□□□□ 0.53
PTPRF-206ENST00000429895 NUP133Q8WUM0 1156 aa18.36■□□□□ 0.53
PTPRF-206ENST00000429895 PDCL3Q9H2J4 239 aa18.36■□□□□ 0.53
PTPRF-206ENST00000429895 DDX24Q9GZR7 859 aaKnown RBP eCLIP18.36■□□□□ 0.53
PTPRF-206ENST00000429895 SLC4A2P04920 1241 aa18.36■□□□□ 0.53
PTPRF-206ENST00000429895 CCDC7Q96M83 1385 aa18.36■□□□□ 0.53
PTPRF-206ENST00000429895 CNTLNQ9NXG0 1405 aa18.36■□□□□ 0.53
PTPRF-206ENST00000429895 GNAI2P04899 355 aa18.36■□□□□ 0.53
PTPRF-206ENST00000429895 SPINK5Q9NQ38 1064 aaPredicted RBP18.36■□□□□ 0.53
PTPRF-206ENST00000429895 FIBPO43427 364 aa18.35■□□□□ 0.53
PTPRF-206ENST00000429895 NASPP49321 788 aaPredicted RBP18.35■□□□□ 0.53
PTPRF-206ENST00000429895 NOB1Q9ULX3 412 aaKnown RBP18.35■□□□□ 0.53
PTPRF-206ENST00000429895 SMARCE1Q969G3 411 aa18.35■□□□□ 0.53
PTPRF-206ENST00000429895 HIP1O00291 1037 aa18.35■□□□□ 0.53
PTPRF-206ENST00000429895 HDGFL1Q5TGJ6 251 aa18.35■□□□□ 0.53
PTPRF-206ENST00000429895 ERC1Q8IUD2 1116 aa18.35■□□□□ 0.53
PTPRF-206ENST00000429895 TSR2Q969E8 191 aaKnown RBP18.35■□□□□ 0.53
PTPRF-206ENST00000429895 BICDL1Q6ZP65 573 aa18.35■□□□□ 0.53
PTPRF-206ENST00000429895 CCDC39Q9UFE4 941 aa18.35■□□□□ 0.53
PTPRF-206ENST00000429895 PRPF40AO75400 957 aaKnown RBP18.34■□□□□ 0.53
PTPRF-206ENST00000429895 CCDC69A6NI79 296 aa18.34■□□□□ 0.53
PTPRF-206ENST00000429895 CDCA7LQ96GN5 454 aa18.34■□□□□ 0.53
PTPRF-206ENST00000429895 ZNF396Q96N95 335 aaPredicted RBP18.34■□□□□ 0.53
PTPRF-206ENST00000429895 MYO6Q9UM54 1294 aa18.34■□□□□ 0.53
PTPRF-206ENST00000429895 ZSCAN29Q8IWY8 852 aaPredicted RBP18.34■□□□□ 0.53
PTPRF-206ENST00000429895 SULT6B1Q6IMI4 303 aa18.33■□□□□ 0.53
PTPRF-206ENST00000429895 MAP7D2Q96T17 732 aa18.33■□□□□ 0.53
PTPRF-206ENST00000429895 TANGO6Q9C0B7 1094 aa18.33■□□□□ 0.53
PTPRF-206ENST00000429895 MPHOSPH8Q99549 860 aa18.32■□□□□ 0.52
PTPRF-206ENST00000429895 FKBP4Q02790 459 aaKnown RBP eCLIP18.32■□□□□ 0.52
PTPRF-206ENST00000429895 AFAP1Q8N556 730 aa18.32■□□□□ 0.52
PTPRF-206ENST00000429895 SPC24Q8NBT2 197 aa18.32■□□□□ 0.52
PTPRF-206ENST00000429895 ARHGAP5Q13017 1502 aa18.32■□□□□ 0.52
PTPRF-206ENST00000429895 PDZRN3Q9UPQ7 1066 aa18.32■□□□□ 0.52
PTPRF-206ENST00000429895 ZNF530Q6P9A1 599 aaPredicted RBP18.32■□□□□ 0.52
PTPRF-206ENST00000429895 PIBF1Q8WXW3 757 aa18.32■□□□□ 0.52
PTPRF-206ENST00000429895 NEFHP12036 1026 aa18.31■□□□□ 0.52
PTPRF-206ENST00000429895 TSPY26PQ9H489 355 aa18.31■□□□□ 0.52
PTPRF-206ENST00000429895 NACAP1Q9BZK3 213 aa18.31■□□□□ 0.52
PTPRF-206ENST00000429895 XPCQ01831 940 aaPredicted RBP18.3■□□□□ 0.52
PTPRF-206ENST00000429895 NFKBIBQ15653 356 aa18.3■□□□□ 0.52
PTPRF-206ENST00000429895 SOGA3Q5TF21 947 aa18.3■□□□□ 0.52
PTPRF-206ENST00000429895 CDK19Q9BWU1 502 aa18.3■□□□□ 0.52
PTPRF-206ENST00000429895 GAPVD1Q14C86 1478 aa18.3■□□□□ 0.52
PTPRF-206ENST00000429895 PPP2R1AP30153 589 aa18.3■□□□□ 0.52
PTPRF-206ENST00000429895 CCDC85AQ96PX6 553 aaPredicted RBP18.3■□□□□ 0.52
PTPRF-206ENST00000429895 MPHOSPH10O00566 681 aaKnown RBP18.29■□□□□ 0.52
PTPRF-206ENST00000429895 SERPINC1P01008 464 aa18.29■□□□□ 0.52
PTPRF-206ENST00000429895 DCTN1Q14203 1278 aa18.29■□□□□ 0.52
PTPRF-206ENST00000429895 CCDC57Q2TAC2 916 aa18.29■□□□□ 0.52
PTPRF-206ENST00000429895 ANKRD62A6NC57 917 aa18.29■□□□□ 0.52
PTPRF-206ENST00000429895 LETM1O95202 739 aaPredicted RBP18.29■□□□□ 0.52
PTPRF-206ENST00000429895 SPG7Q9UQ90 795 aa18.29■□□□□ 0.52
PTPRF-206ENST00000429895 MATR3P43243 847 aaKnown RBP eCLIP18.29■□□□□ 0.527e-14■■■■■ 41.6
PTPRF-206ENST00000429895 SSBP05455 408 aaKnown RBP eCLIP18.29■□□□□ 0.52
PTPRF-206ENST00000429895 TRIM22Q8IYM9 498 aa18.29■□□□□ 0.52
PTPRF-206ENST00000429895 ERCC4Q92889 916 aaPredicted RBP18.29■□□□□ 0.52
PTPRF-206ENST00000429895 H0YHG0 523 aa18.28■□□□□ 0.52
PTPRF-206ENST00000429895 CYP46A1Q9Y6A2 500 aa18.28■□□□□ 0.52
PTPRF-206ENST00000429895 SEPT11Q9NVA2 429 aaKnown RBP18.28■□□□□ 0.52
PTPRF-206ENST00000429895 NOM1Q5C9Z4 860 aaKnown RBP18.28■□□□□ 0.52
PTPRF-206ENST00000429895 DEF6Q9H4E7 631 aa18.28■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms