RNA–Protein interactions for RNA: ENST00000428026.6

PTPRU-204, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,550 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-204ENST00000428026 TRIM5Q9C035 493 aa17.47■□□□□ 0.39
PTPRU-204ENST00000428026 SUPT6HQ7KZ85 1726 aaKnown RBP17.47■□□□□ 0.39
PTPRU-204ENST00000428026 FBXO31Q5XUX0 539 aaPredicted RBP17.47■□□□□ 0.39
PTPRU-204ENST00000428026 CNTLNQ9NXG0 1405 aa17.46■□□□□ 0.39
PTPRU-204ENST00000428026 KIAA1107Q9UPP5 1409 aa17.46■□□□□ 0.39
PTPRU-204ENST00000428026 STRN4Q9NRL3 753 aa17.46■□□□□ 0.39
PTPRU-204ENST00000428026 TTLL5Q6EMB2 1281 aa17.46■□□□□ 0.39
PTPRU-204ENST00000428026 FBXO3Q9UK99 471 aa17.46■□□□□ 0.39
PTPRU-204ENST00000428026 SPC24Q8NBT2 197 aa17.46■□□□□ 0.39
PTPRU-204ENST00000428026 PCF11O94913 1555 aaKnown RBP17.45■□□□□ 0.38
PTPRU-204ENST00000428026 NAP1L1P55209 391 aaKnown RBP17.45■□□□□ 0.38
PTPRU-204ENST00000428026 CCDC173Q0VFZ6 552 aa17.45■□□□□ 0.38
PTPRU-204ENST00000428026 CDK19Q9BWU1 502 aa17.45■□□□□ 0.38
PTPRU-204ENST00000428026 ADAMTS8Q9UP79 889 aa17.45■□□□□ 0.38
PTPRU-204ENST00000428026 CCDC141Q6ZP82 1450 aa17.45■□□□□ 0.38
PTPRU-204ENST00000428026 ERBINQ96RT1 1412 aa17.45■□□□□ 0.38
PTPRU-204ENST00000428026 AK7Q96M32 723 aa17.45■□□□□ 0.38
PTPRU-204ENST00000428026 TSPY26PQ9H489 355 aa17.45■□□□□ 0.38
PTPRU-204ENST00000428026 PDZRN3Q9UPQ7 1066 aa17.45■□□□□ 0.38
PTPRU-204ENST00000428026 WASHC2AQ641Q2 1341 aa17.44■□□□□ 0.38
PTPRU-204ENST00000428026 HOOK1Q9UJC3 728 aaKnown RBP17.44■□□□□ 0.38
PTPRU-204ENST00000428026 PRKCSHP14314 528 aaPredicted RBP17.44■□□□□ 0.38
PTPRU-204ENST00000428026 AKNAQ7Z591 1439 aa17.44■□□□□ 0.38
PTPRU-204ENST00000428026 XPCQ01831 940 aaPredicted RBP17.44■□□□□ 0.38
PTPRU-204ENST00000428026 ACBD3Q9H3P7 528 aa17.44■□□□□ 0.38
PTPRU-204ENST00000428026 CABP1Q9NZU7 370 aa17.43■□□□□ 0.38
PTPRU-204ENST00000428026 NFXL1Q6ZNB6 911 aa17.43■□□□□ 0.38
PTPRU-204ENST00000428026 SDF4Q9BRK5 362 aa17.43■□□□□ 0.38
PTPRU-204ENST00000428026 KDM4AO75164 1064 aa17.43■□□□□ 0.38
PTPRU-204ENST00000428026 NEXNQ0ZGT2 675 aa17.43■□□□□ 0.38
PTPRU-204ENST00000428026 CALRP27797 417 aaKnown RBP17.42■□□□□ 0.38
PTPRU-204ENST00000428026 BACH2Q9BYV9 841 aa17.42■□□□□ 0.38
PTPRU-204ENST00000428026 CCDC66A2RUB6 948 aa17.42■□□□□ 0.38
PTPRU-204ENST00000428026 SLC12A5Q9H2X9 1139 aa17.42■□□□□ 0.38
PTPRU-204ENST00000428026 H0YHG0 523 aa17.42■□□□□ 0.38
PTPRU-204ENST00000428026 RAD21O60216 631 aa17.42■□□□□ 0.38
PTPRU-204ENST00000428026 NEK4P51957 841 aa17.42■□□□□ 0.38
PTPRU-204ENST00000428026 G3BP1Q13283 466 aaKnown RBP eCLIP17.42■□□□□ 0.38
PTPRU-204ENST00000428026 FMNL2Q96PY5 1086 aa17.42■□□□□ 0.38
PTPRU-204ENST00000428026 FANCAO15360 1455 aa17.41■□□□□ 0.38
PTPRU-204ENST00000428026 DENND4BO75064 1496 aaPredicted RBP17.41■□□□□ 0.38
PTPRU-204ENST00000428026 SKIDA1Q1XH10 827 aa17.41■□□□□ 0.38
PTPRU-204ENST00000428026 GRPEL1Q9HAV7 217 aa17.41■□□□□ 0.38
PTPRU-204ENST00000428026 CAMSAP2Q08AD1 1489 aa17.41■□□□□ 0.38
PTPRU-204ENST00000428026 KIF14Q15058 1648 aa17.41■□□□□ 0.38
PTPRU-204ENST00000428026 TRDNQ13061 729 aa17.41■□□□□ 0.38
PTPRU-204ENST00000428026 ROCK1Q13464 1354 aa17.41■□□□□ 0.38
PTPRU-204ENST00000428026 CCDC47Q96A33 483 aaKnown RBP17.41■□□□□ 0.38
PTPRU-204ENST00000428026 FIBPO43427 364 aa17.4■□□□□ 0.38
PTPRU-204ENST00000428026 RBM33Q96EV2 1170 aaKnown RBP17.4■□□□□ 0.38
PTPRU-204ENST00000428026 MBD3O95983 291 aa17.4■□□□□ 0.38
PTPRU-204ENST00000428026 SMC2O95347 1197 aa17.4■□□□□ 0.38
PTPRU-204ENST00000428026 CWC15Q9P013 229 aaKnown RBP17.39■□□□□ 0.38
PTPRU-204ENST00000428026 UQCRHLA0A096LP55 91 aa17.39■□□□□ 0.37
PTPRU-204ENST00000428026 UQCRHP07919 91 aa17.39■□□□□ 0.37
PTPRU-204ENST00000428026 LRRFIP1Q32MZ4 808 aaKnown RBP17.39■□□□□ 0.37
PTPRU-204ENST00000428026 NAT10Q9H0A0 1025 aaKnown RBP17.39■□□□□ 0.37
PTPRU-204ENST00000428026 RRP12Q5JTH9 1297 aaKnown RBP17.39■□□□□ 0.37
PTPRU-204ENST00000428026 C1orf115Q9H7X2 142 aa17.39■□□□□ 0.37
PTPRU-204ENST00000428026 HMGN5P82970 282 aaKnown RBP17.38■□□□□ 0.37
PTPRU-204ENST00000428026 NBPF8Q3BBV2 869 aa17.38■□□□□ 0.37
PTPRU-204ENST00000428026 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.38■□□□□ 0.37
PTPRU-204ENST00000428026 CAGE1Q8TC20 777 aa17.38■□□□□ 0.37
PTPRU-204ENST00000428026 RPGRIP1LQ68CZ1 1315 aa17.38■□□□□ 0.37
PTPRU-204ENST00000428026 MTHFSP49914 203 aa17.38■□□□□ 0.37
PTPRU-204ENST00000428026 BIVM-ERCC5R4GMW8 1640 aa17.38■□□□□ 0.37
PTPRU-204ENST00000428026 OLFM4Q6UX06 510 aa17.37■□□□□ 0.37
PTPRU-204ENST00000428026 ASXL2Q76L83 1435 aa17.37■□□□□ 0.37
PTPRU-204ENST00000428026 KLHL34Q8N239 644 aa17.37■□□□□ 0.37
PTPRU-204ENST00000428026 DHX16O60231 1041 aaKnown RBP17.37■□□□□ 0.37
PTPRU-204ENST00000428026 ERC2O15083 957 aa17.36■□□□□ 0.37
PTPRU-204ENST00000428026 GNAI1P63096 354 aa17.36■□□□□ 0.37
PTPRU-204ENST00000428026 TSPYL4Q9UJ04 414 aa17.36■□□□□ 0.37
PTPRU-204ENST00000428026 BCAR3O75815 825 aa17.36■□□□□ 0.37
PTPRU-204ENST00000428026 MAPK8IP2Q13387 824 aaPredicted RBP17.36■□□□□ 0.37
PTPRU-204ENST00000428026 RTEL1-TNFRSF6BF6WH68 1400 aa17.36■□□□□ 0.37
PTPRU-204ENST00000428026 CEBPZQ03701 1054 aaKnown RBP17.36■□□□□ 0.37
PTPRU-204ENST00000428026 WAPLQ7Z5K2 1190 aa17.35■□□□□ 0.37
PTPRU-204ENST00000428026 LETM1O95202 739 aaPredicted RBP17.35■□□□□ 0.37
PTPRU-204ENST00000428026 CDR1P51861 262 aa17.35■□□□□ 0.37
PTPRU-204ENST00000428026 IDI1Q13907 227 aa17.35■□□□□ 0.37
PTPRU-204ENST00000428026 ABCC5O15440 1437 aa17.35■□□□□ 0.37
PTPRU-204ENST00000428026 ESPNB1AK53 854 aa17.34■□□□□ 0.37
PTPRU-204ENST00000428026 SAFBQ15424 915 aaKnown RBP eCLIP17.34■□□□□ 0.37
PTPRU-204ENST00000428026 BRD4O60885 1362 aaPredicted RBP17.34■□□□□ 0.37
PTPRU-204ENST00000428026 AAMPQ13685 434 aa17.34■□□□□ 0.37
PTPRU-204ENST00000428026 ANKRD30BQ9BXX2 1392 aa17.34■□□□□ 0.37
PTPRU-204ENST00000428026 NEUROD6Q96NK8 337 aa17.34■□□□□ 0.37
PTPRU-204ENST00000428026 RABEP1Q15276 862 aa17.33■□□□□ 0.36
PTPRU-204ENST00000428026 TCP11L2Q8N4U5 519 aa17.33■□□□□ 0.36
PTPRU-204ENST00000428026 KINO60870 393 aaKnown RBP17.33■□□□□ 0.36
PTPRU-204ENST00000428026 TOM1L2Q6ZVM7 507 aa17.33■□□□□ 0.36
PTPRU-204ENST00000428026 PODXL2Q9NZ53 605 aa17.33■□□□□ 0.36
PTPRU-204ENST00000428026 RALYLQ86SE5 291 aaKnown RBP17.32■□□□□ 0.36
PTPRU-204ENST00000428026 PRDM11Q9NQV5 511 aa17.32■□□□□ 0.36
PTPRU-204ENST00000428026 ZNF692Q9BU19 519 aaPredicted RBP17.32■□□□□ 0.36
PTPRU-204ENST00000428026 ERICH2A1L162 156 aa17.32■□□□□ 0.36
PTPRU-204ENST00000428026 RDXP35241 583 aaKnown RBP17.32■□□□□ 0.36
PTPRU-204ENST00000428026 WASHC4Q2M389 1173 aa17.32■□□□□ 0.36
PTPRU-204ENST00000428026 LEKR1Q6ZMV7 388 aa17.32■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms