RNA–Protein interactions for RNA: ENST00000428014.1

SMC1A-203, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 3

Gene SMC1A, Length 868 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-203ENST00000428014 DDX17Q92841 729 aaKnown RBP12.98□□□□□ -0.33
SMC1A-203ENST00000428014 HIRIP3Q9BW71 556 aaPredicted RBP12.98□□□□□ -0.33
SMC1A-203ENST00000428014 MARF1Q9Y4F3 1742 aaKnown RBP12.98□□□□□ -0.33
SMC1A-203ENST00000428014 NINLQ9Y2I6 1382 aa12.97□□□□□ -0.33
SMC1A-203ENST00000428014 MEX3CQ5U5Q3 659 aaKnown RBP12.97□□□□□ -0.33
SMC1A-203ENST00000428014 ZNF692Q9BU19 519 aaPredicted RBP12.97□□□□□ -0.33
SMC1A-203ENST00000428014 CARD11Q9BXL7 1154 aa12.97□□□□□ -0.33
SMC1A-203ENST00000428014 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.96□□□□□ -0.33
SMC1A-203ENST00000428014 CAPN15O75808 1086 aa12.96□□□□□ -0.33
SMC1A-203ENST00000428014 SLIT2O94813 1529 aa12.95□□□□□ -0.34
SMC1A-203ENST00000428014 NUTM2FA1L443 756 aa12.95□□□□□ -0.34
SMC1A-203ENST00000428014 NGDNQ8NEJ9 315 aaKnown RBP12.95□□□□□ -0.34
SMC1A-203ENST00000428014 POTEAQ6S8J7 498 aa12.94□□□□□ -0.34
SMC1A-203ENST00000428014 PCGF6Q9BYE7 350 aa12.94□□□□□ -0.34
SMC1A-203ENST00000428014 PPIP5K1Q6PFW1 1433 aa12.94□□□□□ -0.34
SMC1A-203ENST00000428014 SSH2Q76I76 1423 aa12.94□□□□□ -0.34
SMC1A-203ENST00000428014 NWD2Q9ULI1 1742 aa12.93□□□□□ -0.34
SMC1A-203ENST00000428014 ACEP12821 1306 aa12.93□□□□□ -0.34
SMC1A-203ENST00000428014 AFF2P51816 1311 aa12.93□□□□□ -0.34
SMC1A-203ENST00000428014 SRPK2P78362 688 aaKnown RBP12.93□□□□□ -0.34
SMC1A-203ENST00000428014 PMFBP1Q8TBY8 1022 aa12.93□□□□□ -0.34
SMC1A-203ENST00000428014 CPSF1Q10570 1443 aaKnown RBP12.93□□□□□ -0.34
SMC1A-203ENST00000428014 ATRNO75882 1429 aa12.92□□□□□ -0.34
SMC1A-203ENST00000428014 USP6P35125 1406 aa12.92□□□□□ -0.34
SMC1A-203ENST00000428014 RBM6P78332 1123 aaKnown RBP12.92□□□□□ -0.34
SMC1A-203ENST00000428014 NGLY1Q96IV0 654 aa12.92□□□□□ -0.34
SMC1A-203ENST00000428014 ABCA3Q99758 1704 aa12.92□□□□□ -0.34
SMC1A-203ENST00000428014 TRPC5Q9UL62 973 aaPredicted RBP12.92□□□□□ -0.34
SMC1A-203ENST00000428014 BCL9LQ86UU0 1499 aa12.91□□□□□ -0.34
SMC1A-203ENST00000428014 CRYBG1Q9Y4K1 1723 aa12.91□□□□□ -0.34
SMC1A-203ENST00000428014 RXRBP28702 533 aa12.91□□□□□ -0.34
SMC1A-203ENST00000428014 TESK2Q96S53 571 aa12.91□□□□□ -0.34
SMC1A-203ENST00000428014 CPDO75976 1380 aa12.91□□□□□ -0.34
SMC1A-203ENST00000428014 USP19O94966 1318 aa12.9□□□□□ -0.34
SMC1A-203ENST00000428014 TTC21AQ8NDW8 1320 aa12.9□□□□□ -0.34
SMC1A-203ENST00000428014 NUTM2BA6NNL0 878 aaPredicted RBP12.9□□□□□ -0.34
SMC1A-203ENST00000428014 NUTM2EB1AL46 878 aaPredicted RBP12.9□□□□□ -0.34
SMC1A-203ENST00000428014 CDCA8Q53HL2 280 aa12.9□□□□□ -0.34
SMC1A-203ENST00000428014 NUTM2AQ8IVF1 878 aaPredicted RBP12.9□□□□□ -0.34
SMC1A-203ENST00000428014 C8orf37Q96NL8 207 aa12.9□□□□□ -0.34
SMC1A-203ENST00000428014 ZNF219Q9P2Y4 722 aaPredicted RBP12.9□□□□□ -0.34
SMC1A-203ENST00000428014 XPCQ01831 940 aaPredicted RBP12.89□□□□□ -0.35
SMC1A-203ENST00000428014 NLRP13Q86W25 1043 aa12.89□□□□□ -0.35
SMC1A-203ENST00000428014 USP21Q9UK80 565 aa12.89□□□□□ -0.35
SMC1A-203ENST00000428014 CACNB1Q02641 598 aaPredicted RBP12.88□□□□□ -0.35
SMC1A-203ENST00000428014 UNC5CLQ8IV45 518 aa12.88□□□□□ -0.35
SMC1A-203ENST00000428014 QTRT2Q9H974 415 aaKnown RBP12.88□□□□□ -0.35
SMC1A-203ENST00000428014 CABP2Q9NPB3 220 aa12.88□□□□□ -0.35
SMC1A-203ENST00000428014 CABP1Q9NZU7 370 aa12.88□□□□□ -0.35
SMC1A-203ENST00000428014 COL14A1Q05707 1796 aaKnown RBP12.88□□□□□ -0.35
SMC1A-203ENST00000428014 AKAP12Q02952 1782 aa12.87□□□□□ -0.35
SMC1A-203ENST00000428014 USP54Q70EL1 1684 aa12.87□□□□□ -0.35
SMC1A-203ENST00000428014 USP47Q96K76 1375 aa12.87□□□□□ -0.35
SMC1A-203ENST00000428014 ONECUT3O60422 494 aaPredicted RBP12.87□□□□□ -0.35
SMC1A-203ENST00000428014 ADAMTS2O95450 1211 aa12.87□□□□□ -0.35
SMC1A-203ENST00000428014 ABCC6O95255 1503 aa12.87□□□□□ -0.35
SMC1A-203ENST00000428014 USP31Q70CQ4 1352 aa12.86□□□□□ -0.35
SMC1A-203ENST00000428014 VPS72Q15906 364 aa12.86□□□□□ -0.35
SMC1A-203ENST00000428014 SLIT3O75094 1523 aa12.86□□□□□ -0.35
SMC1A-203ENST00000428014 ST20-MTHFSA0A0A6YYL1 179 aa12.85□□□□□ -0.35
SMC1A-203ENST00000428014 TMF1P82094 1093 aa12.85□□□□□ -0.35
SMC1A-203ENST00000428014 TERF2IPQ9NYB0 399 aa12.85□□□□□ -0.35
SMC1A-203ENST00000428014 NRKQ7Z2Y5 1582 aa12.85□□□□□ -0.35
SMC1A-203ENST00000428014 MON2Q7Z3U7 1717 aa12.85□□□□□ -0.35
SMC1A-203ENST00000428014 PHRF1Q9P1Y6 1649 aaKnown RBP12.84□□□□□ -0.35
SMC1A-203ENST00000428014 HAP1P54257 671 aaPredicted RBP12.84□□□□□ -0.35
SMC1A-203ENST00000428014 ABTB2Q8N961 1025 aa12.84□□□□□ -0.35
SMC1A-203ENST00000428014 KCNH5Q8NCM2 988 aa12.84□□□□□ -0.35
SMC1A-203ENST00000428014 CCER1Q8TC90 406 aaPredicted RBP12.84□□□□□ -0.35
SMC1A-203ENST00000428014 GJD4Q96KN9 370 aaPredicted RBP12.84□□□□□ -0.35
SMC1A-203ENST00000428014 EDC4Q6P2E9 1401 aaKnown RBP12.84□□□□□ -0.35
SMC1A-203ENST00000428014 CD163L1Q9NR16 1453 aa12.84□□□□□ -0.35
SMC1A-203ENST00000428014 PLCH1Q4KWH8 1693 aa12.83□□□□□ -0.35
SMC1A-203ENST00000428014 FAM83GA6ND36 823 aa12.82□□□□□ -0.36
SMC1A-203ENST00000428014 PAK3O75914 559 aaPredicted RBP12.82□□□□□ -0.36
SMC1A-203ENST00000428014 HDGFL2Q7Z4V5 671 aaPredicted RBP12.82□□□□□ -0.36
SMC1A-203ENST00000428014 TTC21BQ7Z4L5 1316 aa12.82□□□□□ -0.36
SMC1A-203ENST00000428014 NRAPQ86VF7 1730 aa12.82□□□□□ -0.36
SMC1A-203ENST00000428014 AATKQ6ZMQ8 1374 aa12.81□□□□□ -0.36
SMC1A-203ENST00000428014 KTN1Q86UP2 1357 aaKnown RBP12.81□□□□□ -0.36
SMC1A-203ENST00000428014 GCP02774 474 aa12.81□□□□□ -0.36
SMC1A-203ENST00000428014 LMOD2Q6P5Q4 547 aa12.81□□□□□ -0.36
SMC1A-203ENST00000428014 ANKRD36BQ8N2N9 1353 aa12.81□□□□□ -0.36
SMC1A-203ENST00000428014 RGS12O14924 1447 aa12.8□□□□□ -0.36
SMC1A-203ENST00000428014 CABLES1Q8TDN4 633 aa12.8□□□□□ -0.36
SMC1A-203ENST00000428014 PRDM11Q9NQV5 511 aa12.8□□□□□ -0.36
SMC1A-203ENST00000428014 PIK3C2AO00443 1686 aa12.8□□□□□ -0.36
SMC1A-203ENST00000428014 LMO7Q8WWI1 1683 aa12.8□□□□□ -0.36
SMC1A-203ENST00000428014 GLI3P10071 1580 aa12.79□□□□□ -0.36
SMC1A-203ENST00000428014 CCDC125Q86Z20 511 aa12.79□□□□□ -0.36
SMC1A-203ENST00000428014 KIAA0232Q92628 1395 aa12.79□□□□□ -0.36
SMC1A-203ENST00000428014 NLRP6P59044 892 aa12.78□□□□□ -0.36
SMC1A-203ENST00000428014 THRAP3Q9Y2W1 955 aaKnown RBP12.78□□□□□ -0.36
SMC1A-203ENST00000428014 A0A1W2PP64 1363 aa12.78□□□□□ -0.36
SMC1A-203ENST00000428014 C11orf95C9JLR9 678 aaPredicted RBP12.77□□□□□ -0.37
SMC1A-203ENST00000428014 EIF4G2P78344 907 aaKnown RBP eCLIP12.77□□□□□ -0.37
SMC1A-203ENST00000428014 BTG4Q9NY30 223 aa12.77□□□□□ -0.37
SMC1A-203ENST00000428014 SPATA31A5Q5VU36 1347 aa12.77□□□□□ -0.37
SMC1A-203ENST00000428014 SPATA31A7Q8IWB4 1347 aa12.77□□□□□ -0.37
SMC1A-203ENST00000428014 BARGINQ6ZT62 677 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms