RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 CHMP5Q9NZZ3 219 aa10.82□□□□□ -0.68
USP40-203ENST00000427112 SYNMO15061 1565 aa10.82□□□□□ -0.68
USP40-203ENST00000427112 TXNDC2Q86VQ3 553 aa10.82□□□□□ -0.68
USP40-203ENST00000427112 WDR63Q8IWG1 891 aa10.82□□□□□ -0.68
USP40-203ENST00000427112 CHD1LQ86WJ1 897 aa10.81□□□□□ -0.68
USP40-203ENST00000427112 AEBP1Q8IUX7 1158 aa10.81□□□□□ -0.68
USP40-203ENST00000427112 C8orf58Q8NAV2 365 aa10.81□□□□□ -0.68
USP40-203ENST00000427112 BCL11BQ9C0K0 894 aaPredicted RBP10.81□□□□□ -0.68
USP40-203ENST00000427112 DUOX2Q9NRD8 1548 aa10.81□□□□□ -0.68
USP40-203ENST00000427112 MCTP1Q6DN14 999 aa10.81□□□□□ -0.68
USP40-203ENST00000427112 LTV1Q96GA3 475 aaPredicted RBP10.81□□□□□ -0.68
USP40-203ENST00000427112 C14orf93Q9H972 538 aaKnown RBP10.81□□□□□ -0.68
USP40-203ENST00000427112 PTPRTO14522 1441 aa10.81□□□□□ -0.68
USP40-203ENST00000427112 MAST1Q9Y2H9 1570 aa10.81□□□□□ -0.68
USP40-203ENST00000427112 F6X3S4 739 aa10.81□□□□□ -0.68
USP40-203ENST00000427112 CLTCL1P53675 1640 aa10.8□□□□□ -0.68
USP40-203ENST00000427112 RNF214Q8ND24 703 aa10.8□□□□□ -0.68
USP40-203ENST00000427112 GAS2L2Q8NHY3 880 aa10.8□□□□□ -0.68
USP40-203ENST00000427112 FANCAO15360 1455 aa10.8□□□□□ -0.68
USP40-203ENST00000427112 A0A1W2PP64 1363 aa10.8□□□□□ -0.68
USP40-203ENST00000427112 TBC1D9Q6ZT07 1266 aa10.8□□□□□ -0.68
USP40-203ENST00000427112 RBM27Q9P2N5 1060 aaKnown RBP10.8□□□□□ -0.68
USP40-203ENST00000427112 ADGRL1O94910 1474 aa10.79□□□□□ -0.68
USP40-203ENST00000427112 MAP4K4O95819 1239 aaPredicted RBP10.79□□□□□ -0.68
USP40-203ENST00000427112 C14orf37Q86TY3 774 aa10.79□□□□□ -0.68
USP40-203ENST00000427112 DDX49Q9Y6V7 483 aaKnown RBP10.79□□□□□ -0.68
USP40-203ENST00000427112 PREX2Q70Z35 1606 aa10.79□□□□□ -0.68
USP40-203ENST00000427112 RBM10P98175 930 aaKnown RBP10.79□□□□□ -0.68
USP40-203ENST00000427112 L1TD1Q5T7N2 865 aaKnown RBP10.79□□□□□ -0.68
USP40-203ENST00000427112 ARHGEF5Q12774 1597 aa10.79□□□□□ -0.68
USP40-203ENST00000427112 HDGFL2Q7Z4V5 671 aaPredicted RBP10.78□□□□□ -0.68
USP40-203ENST00000427112 FAM43AQ8N2R8 423 aa10.78□□□□□ -0.68
USP40-203ENST00000427112 RBM33Q96EV2 1170 aaKnown RBP10.78□□□□□ -0.68
USP40-203ENST00000427112 GRPEL1Q9HAV7 217 aa10.78□□□□□ -0.68
USP40-203ENST00000427112 ERBB4Q15303 1308 aa10.78□□□□□ -0.68
USP40-203ENST00000427112 POLR3AO14802 1390 aaPredicted RBP10.78□□□□□ -0.68
USP40-203ENST00000427112 CYB5RLQ6IPT4 315 aa10.78□□□□□ -0.68
USP40-203ENST00000427112 CAVIN1Q6NZI2 390 aaKnown RBP10.78□□□□□ -0.68
USP40-203ENST00000427112 DDX54Q8TDD1 881 aaKnown RBP10.78□□□□□ -0.68
USP40-203ENST00000427112 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.78□□□□□ -0.68
USP40-203ENST00000427112 VGFO15240 615 aaPredicted RBP10.78□□□□□ -0.68
USP40-203ENST00000427112 PLCB2Q00722 1185 aa10.78□□□□□ -0.68
USP40-203ENST00000427112 TWISTNBQ3B726 338 aaPredicted RBP10.78□□□□□ -0.68
USP40-203ENST00000427112 ZBTB40Q9NUA8 1239 aa10.78□□□□□ -0.68
USP40-203ENST00000427112 TERF2IPQ9NYB0 399 aa10.78□□□□□ -0.68
USP40-203ENST00000427112 MBIPQ9NS73 344 aa10.77□□□□□ -0.69
USP40-203ENST00000427112 IPO8O15397 1037 aaKnown RBP10.77□□□□□ -0.69
USP40-203ENST00000427112 FOXO3O43524 673 aa10.77□□□□□ -0.69
USP40-203ENST00000427112 ZGPATQ8N5A5 531 aaKnown RBP10.77□□□□□ -0.69
USP40-203ENST00000427112 UBE2Q2Q8WVN8 375 aa10.77□□□□□ -0.69
USP40-203ENST00000427112 GDPD2Q9HCC8 539 aa10.76□□□□□ -0.69
USP40-203ENST00000427112 TAOK2Q9UL54 1235 aa10.76□□□□□ -0.69
USP40-203ENST00000427112 SHROOM2Q13796 1616 aa10.76□□□□□ -0.69
USP40-203ENST00000427112 MADDQ8WXG6 1647 aa10.76□□□□□ -0.69
USP40-203ENST00000427112 SIRT2Q8IXJ6 389 aa10.76□□□□□ -0.69
USP40-203ENST00000427112 AK9Q5TCS8 1911 aa10.76□□□□□ -0.69
USP40-203ENST00000427112 CD109Q6YHK3 1445 aa10.76□□□□□ -0.69
USP40-203ENST00000427112 SULT6B1Q6IMI4 303 aa10.75□□□□□ -0.69
USP40-203ENST00000427112 PLEKHF1Q96S99 279 aa10.75□□□□□ -0.69
USP40-203ENST00000427112 EXOC6BQ9Y2D4 811 aa10.75□□□□□ -0.69
USP40-203ENST00000427112 RILPL2Q969X0 211 aa10.75□□□□□ -0.69
USP40-203ENST00000427112 POLKQ9UBT6 870 aa10.75□□□□□ -0.69
USP40-203ENST00000427112 PRPF40AO75400 957 aaKnown RBP10.74□□□□□ -0.69
USP40-203ENST00000427112 EIF2AK4Q9P2K8 1649 aaKnown RBP10.74□□□□□ -0.69
USP40-203ENST00000427112 TRIM6-TRIM34B2RNG4 842 aa10.73□□□□□ -0.69
USP40-203ENST00000427112 NUCB1Q02818 461 aa10.73□□□□□ -0.69
USP40-203ENST00000427112 HSP90AA2PQ14568 343 aaPredicted RBP10.73□□□□□ -0.69
USP40-203ENST00000427112 IQGAP3Q86VI3 1631 aa10.73□□□□□ -0.69
USP40-203ENST00000427112 VAMP4O75379 141 aa10.73□□□□□ -0.69
USP40-203ENST00000427112 MEIS3Q99687 375 aa10.73□□□□□ -0.69
USP40-203ENST00000427112 UPF3BQ9BZI7 483 aaKnown RBP10.73□□□□□ -0.69
USP40-203ENST00000427112 NLRP1Q9C000 1473 aa10.72□□□□□ -0.69
USP40-203ENST00000427112 ZBTB7BO15156 539 aaPredicted RBP10.72□□□□□ -0.69
USP40-203ENST00000427112 GSPT1P15170 499 aaKnown RBP10.72□□□□□ -0.69
USP40-203ENST00000427112 SMC5Q8IY18 1101 aa10.72□□□□□ -0.69
USP40-203ENST00000427112 CHMP3Q9Y3E7 222 aa10.72□□□□□ -0.69
USP40-203ENST00000427112 ABCC2Q92887 1545 aa10.72□□□□□ -0.69
USP40-203ENST00000427112 RSPH6AQ9H0K4 717 aa10.72□□□□□ -0.69
USP40-203ENST00000427112 KDM5AP29375 1690 aaKnown RBP10.72□□□□□ -0.69
USP40-203ENST00000427112 IL1RAPL2Q9NP60 686 aa10.71□□□□□ -0.69
USP40-203ENST00000427112 NPATQ14207 1427 aa10.71□□□□□ -0.69
USP40-203ENST00000427112 UNC13BO14795 1591 aa10.71□□□□□ -0.69
USP40-203ENST00000427112 ESPNB1AK53 854 aa10.71□□□□□ -0.69
USP40-203ENST00000427112 G2E3Q7L622 706 aa10.71□□□□□ -0.69
USP40-203ENST00000427112 GBP4Q96PP9 640 aa10.71□□□□□ -0.69
USP40-203ENST00000427112 SLC4A2P04920 1241 aa10.71□□□□□ -0.7
USP40-203ENST00000427112 KIF16BQ96L93 1317 aa10.7□□□□□ -0.7
USP40-203ENST00000427112 HSP90AB2PQ58FF8 381 aa10.7□□□□□ -0.7
USP40-203ENST00000427112 K7ELQ4 463 aaPredicted RBP10.7□□□□□ -0.7
USP40-203ENST00000427112 MRPL50Q8N5N7 158 aaKnown RBP10.7□□□□□ -0.7
USP40-203ENST00000427112 KIF2CQ99661 725 aa10.7□□□□□ -0.7
USP40-203ENST00000427112 CCDC9Q9Y3X0 531 aaKnown RBP10.7□□□□□ -0.7
USP40-203ENST00000427112 ABCA6Q8N139 1617 aa10.7□□□□□ -0.7
USP40-203ENST00000427112 ANXA1P04083 346 aa10.7□□□□□ -0.7
USP40-203ENST00000427112 HDAC1Q13547 482 aaPredicted RBP10.7□□□□□ -0.7
USP40-203ENST00000427112 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.7□□□□□ -0.7
USP40-203ENST00000427112 JARID2Q92833 1246 aaPredicted RBP10.7□□□□□ -0.7
USP40-203ENST00000427112 PHF23Q9BUL5 403 aaPredicted RBP10.7□□□□□ -0.7
USP40-203ENST00000427112 FAM177BA6PVY3 158 aa10.69□□□□□ -0.7
USP40-203ENST00000427112 NASPP49321 788 aaPredicted RBP10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms