RNA–Protein interactions for RNA: ENST00000426280.3

GPC1-204, Transcript of glypican 1, humanhuman

TSL 3

Gene GPC1, Length 636 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-204ENST00000426280 CARD11Q9BXL7 1154 aa18.21■□□□□ 0.51
GPC1-204ENST00000426280 TRPC5Q9UL62 973 aaPredicted RBP18.21■□□□□ 0.51
GPC1-204ENST00000426280 ABCA3Q99758 1704 aa18.2■□□□□ 0.5
GPC1-204ENST00000426280 PPIP5K1Q6PFW1 1433 aa18.2■□□□□ 0.5
GPC1-204ENST00000426280 HAP1P54257 671 aaPredicted RBP18.19■□□□□ 0.5
GPC1-204ENST00000426280 ITSN1Q15811 1721 aa18.18■□□□□ 0.5
GPC1-204ENST00000426280 UNC5CLQ8IV45 518 aa18.18■□□□□ 0.5
GPC1-204ENST00000426280 RALGAPBQ86X10 1494 aa18.18■□□□□ 0.5
GPC1-204ENST00000426280 UPF1Q92900 1129 aaKnown RBP eCLIP18.17■□□□□ 0.5
GPC1-204ENST00000426280 CDK12Q9NYV4 1490 aaPredicted RBP18.17■□□□□ 0.5
GPC1-204ENST00000426280 CRYBG1Q9Y4K1 1723 aa18.17■□□□□ 0.5
GPC1-204ENST00000426280 EVC2Q86UK5 1308 aa18.17■□□□□ 0.5
GPC1-204ENST00000426280 GJD4Q96KN9 370 aaPredicted RBP18.16■□□□□ 0.5
GPC1-204ENST00000426280 GLI3P10071 1580 aa18.13■□□□□ 0.49
GPC1-204ENST00000426280 CHRNA2Q15822 529 aa18.13■□□□□ 0.49
GPC1-204ENST00000426280 ABTB2Q8N961 1025 aa18.13■□□□□ 0.49
GPC1-204ENST00000426280 BTG4Q9NY30 223 aa18.13■□□□□ 0.49
GPC1-204ENST00000426280 ZC3H6P61129 1189 aaKnown RBP18.12■□□□□ 0.49
GPC1-204ENST00000426280 SSH2Q76I76 1423 aa18.12■□□□□ 0.49
GPC1-204ENST00000426280 PLCH1Q4KWH8 1693 aa18.12■□□□□ 0.49
GPC1-204ENST00000426280 ST20-MTHFSA0A0A6YYL1 179 aa18.11■□□□□ 0.49
GPC1-204ENST00000426280 VPS72Q15906 364 aa18.11■□□□□ 0.49
GPC1-204ENST00000426280 TESK2Q96S53 571 aa18.11■□□□□ 0.49
GPC1-204ENST00000426280 USP6P35125 1406 aa18.1■□□□□ 0.49
GPC1-204ENST00000426280 KIAA0232Q92628 1395 aa18.1■□□□□ 0.49
GPC1-204ENST00000426280 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.09■□□□□ 0.49
GPC1-204ENST00000426280 SBNO2Q9Y2G9 1366 aa18.08■□□□□ 0.49
GPC1-204ENST00000426280 PRDM11Q9NQV5 511 aa18.08■□□□□ 0.48
GPC1-204ENST00000426280 PHRF1Q9P1Y6 1649 aaKnown RBP18.08■□□□□ 0.48
GPC1-204ENST00000426280 NRAPQ86VF7 1730 aa18.07■□□□□ 0.48
GPC1-204ENST00000426280 USP19O94966 1318 aa18.07■□□□□ 0.48
GPC1-204ENST00000426280 SLC12A5Q9H2X9 1139 aa18.07■□□□□ 0.48
GPC1-204ENST00000426280 ZRANB1Q9UGI0 708 aa18.07■□□□□ 0.48
GPC1-204ENST00000426280 CPSF1Q10570 1443 aaKnown RBP18.06■□□□□ 0.48
GPC1-204ENST00000426280 TTC21BQ7Z4L5 1316 aa18.06■□□□□ 0.48
GPC1-204ENST00000426280 CCDC9Q9Y3X0 531 aaKnown RBP18.06■□□□□ 0.48
GPC1-204ENST00000426280 CD163L1Q9NR16 1453 aa18.06■□□□□ 0.48
GPC1-204ENST00000426280 NWD2Q9ULI1 1742 aa18.06■□□□□ 0.48
GPC1-204ENST00000426280 COL14A1Q05707 1796 aaKnown RBP18.05■□□□□ 0.48
GPC1-204ENST00000426280 ONECUT3O60422 494 aaPredicted RBP18.05■□□□□ 0.48
GPC1-204ENST00000426280 GCP02774 474 aa18.05■□□□□ 0.48
GPC1-204ENST00000426280 NLRP6P59044 892 aa18.05■□□□□ 0.48
GPC1-204ENST00000426280 NLRP13Q86W25 1043 aa18.05■□□□□ 0.48
GPC1-204ENST00000426280 SEPT12Q8IYM1 358 aa18.05■□□□□ 0.48
GPC1-204ENST00000426280 NRKQ7Z2Y5 1582 aa18.04■□□□□ 0.48
GPC1-204ENST00000426280 ATAD2Q6PL18 1390 aa18.04■□□□□ 0.48
GPC1-204ENST00000426280 AKAP12Q02952 1782 aa18.02■□□□□ 0.48
GPC1-204ENST00000426280 FAM98CQ17RN3 349 aaKnown RBP18.02■□□□□ 0.48
GPC1-204ENST00000426280 TMC1Q8TDI8 760 aa18.02■□□□□ 0.48
GPC1-204ENST00000426280 ZNF692Q9BU19 519 aaPredicted RBP18.02■□□□□ 0.48
GPC1-204ENST00000426280 STRN4Q9NRL3 753 aa18.02■□□□□ 0.48
GPC1-204ENST00000426280 PIK3C2AO00443 1686 aa18.02■□□□□ 0.47
GPC1-204ENST00000426280 CAMTA1Q9Y6Y1 1673 aa18.02■□□□□ 0.47
GPC1-204ENST00000426280 SPATA31A5Q5VU36 1347 aa18.01■□□□□ 0.47
GPC1-204ENST00000426280 SPATA31A7Q8IWB4 1347 aa18.01■□□□□ 0.47
GPC1-204ENST00000426280 CLSPNQ9HAW4 1339 aa18.01■□□□□ 0.47
GPC1-204ENST00000426280 CCER1Q8TC90 406 aaPredicted RBP18.01■□□□□ 0.47
GPC1-204ENST00000426280 BRD4O60885 1362 aaPredicted RBP18.01■□□□□ 0.47
GPC1-204ENST00000426280 KTN1Q86UP2 1357 aaKnown RBP18.01■□□□□ 0.47
GPC1-204ENST00000426280 BRWD3Q6RI45 1802 aa18■□□□□ 0.47
GPC1-204ENST00000426280 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18■□□□□ 0.47
GPC1-204ENST00000426280 ZBTB7CA1YPR0 619 aa17.99■□□□□ 0.47
GPC1-204ENST00000426280 LARP1Q6PKG0 1096 aaKnown RBP17.99■□□□□ 0.47
GPC1-204ENST00000426280 NME9Q86XW9 330 aa17.99■□□□□ 0.47
GPC1-204ENST00000426280 TIMELESSQ9UNS1 1208 aa17.99■□□□□ 0.47
GPC1-204ENST00000426280 CPDO75976 1380 aa17.99■□□□□ 0.47
GPC1-204ENST00000426280 USP47Q96K76 1375 aa17.99■□□□□ 0.47
GPC1-204ENST00000426280 SLIT3O75094 1523 aa17.98■□□□□ 0.47
GPC1-204ENST00000426280 SOX12O15370 315 aa17.98■□□□□ 0.47
GPC1-204ENST00000426280 FAM182BQ5T319 152 aa17.98■□□□□ 0.47
GPC1-204ENST00000426280 AXIN2Q9Y2T1 843 aa17.98■□□□□ 0.47
GPC1-204ENST00000426280 SPATA31A1Q5TZJ5 1347 aa17.98■□□□□ 0.47
GPC1-204ENST00000426280 LMO7Q8WWI1 1683 aa17.97■□□□□ 0.47
GPC1-204ENST00000426280 A0A1W2PP64 1363 aa17.96■□□□□ 0.47
GPC1-204ENST00000426280 PUS7Q96PZ0 661 aaKnown RBP17.96■□□□□ 0.47
GPC1-204ENST00000426280 USP35Q9P2H5 1018 aa17.96■□□□□ 0.47
GPC1-204ENST00000426280 TTC21AQ8NDW8 1320 aa17.96■□□□□ 0.46
GPC1-204ENST00000426280 MON2Q7Z3U7 1717 aa17.95■□□□□ 0.46
GPC1-204ENST00000426280 EVA1CP58658 441 aa17.95■□□□□ 0.46
GPC1-204ENST00000426280 KRT27Q7Z3Y8 459 aa17.94■□□□□ 0.46
GPC1-204ENST00000426280 ARHGEF25Q86VW2 580 aa17.94■□□□□ 0.46
GPC1-204ENST00000426280 COL18A1P39060 1754 aa17.94■□□□□ 0.46
GPC1-204ENST00000426280 A0A0G2JS52 829 aa17.93■□□□□ 0.46
GPC1-204ENST00000426280 MYT1Q01538 1121 aa17.93■□□□□ 0.46
GPC1-204ENST00000426280 FBLN1P23142 703 aa17.92■□□□□ 0.46
GPC1-204ENST00000426280 HDGFL2Q7Z4V5 671 aaPredicted RBP17.92■□□□□ 0.46
GPC1-204ENST00000426280 COL5A2P05997 1499 aaPredicted RBP17.92■□□□□ 0.46
GPC1-204ENST00000426280 AATKQ6ZMQ8 1374 aa17.91■□□□□ 0.46
GPC1-204ENST00000426280 USP31Q70CQ4 1352 aa17.91■□□□□ 0.46
GPC1-204ENST00000426280 THSD7AQ9UPZ6 1657 aa17.9■□□□□ 0.46
GPC1-204ENST00000426280 NFAT5O94916 1531 aa17.9■□□□□ 0.46
GPC1-204ENST00000426280 TMF1P82094 1093 aa17.9■□□□□ 0.46
GPC1-204ENST00000426280 TERF2IPQ9NYB0 399 aa17.9■□□□□ 0.46
GPC1-204ENST00000426280 DEFB132Q7Z7B7 95 aa17.89■□□□□ 0.45
GPC1-204ENST00000426280 EDC4Q6P2E9 1401 aaKnown RBP17.89■□□□□ 0.45
GPC1-204ENST00000426280 BARGINQ6ZT62 677 aa17.87■□□□□ 0.45
GPC1-204ENST00000426280 TCP11L2Q8N4U5 519 aa17.87■□□□□ 0.45
GPC1-204ENST00000426280 KCNH5Q8NCM2 988 aa17.87■□□□□ 0.45
GPC1-204ENST00000426280 RGPD5Q99666 1765 aa17.86■□□□□ 0.45
GPC1-204ENST00000426280 CARD14Q9BXL6 1004 aa17.86■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms