RNA–Protein interactions for RNA: ENST00000422489.1

NUP50-206, Transcript of nucleoporin 50, humanhuman

TSL 3

Gene NUP50, Length 543 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP50-206ENST00000422489 ATAD2Q6PL18 1390 aa13.27□□□□□ -0.29
NUP50-206ENST00000422489 SLIT2O94813 1529 aa13.26□□□□□ -0.29
NUP50-206ENST00000422489 ZC3H6P61129 1189 aaKnown RBP13.26□□□□□ -0.29
NUP50-206ENST00000422489 SEPT12Q8IYM1 358 aa13.26□□□□□ -0.29
NUP50-206ENST00000422489 ABTB2Q8N961 1025 aa13.26□□□□□ -0.29
NUP50-206ENST00000422489 PRDM11Q9NQV5 511 aa13.26□□□□□ -0.29
NUP50-206ENST00000422489 CABP1Q9NZU7 370 aa13.26□□□□□ -0.29
NUP50-206ENST00000422489 ROCK2O75116 1388 aaKnown RBP13.25□□□□□ -0.29
NUP50-206ENST00000422489 ATP7BP35670 1465 aa13.24□□□□□ -0.29
NUP50-206ENST00000422489 RALGAPBQ86X10 1494 aa13.24□□□□□ -0.29
NUP50-206ENST00000422489 EVC2Q86UK5 1308 aa13.24□□□□□ -0.29
NUP50-206ENST00000422489 CHRNA2Q15822 529 aa13.24□□□□□ -0.29
NUP50-206ENST00000422489 EVA1CP58658 441 aa13.23□□□□□ -0.29
NUP50-206ENST00000422489 FAM98CQ17RN3 349 aaKnown RBP13.23□□□□□ -0.29
NUP50-206ENST00000422489 STRN4Q9NRL3 753 aa13.23□□□□□ -0.29
NUP50-206ENST00000422489 PPIP5K1Q6PFW1 1433 aa13.22□□□□□ -0.29
NUP50-206ENST00000422489 ARHGEF28Q8N1W1 1705 aaKnown RBP13.22□□□□□ -0.29
NUP50-206ENST00000422489 TONSLQ96HA7 1378 aa13.22□□□□□ -0.29
NUP50-206ENST00000422489 ZBTB7CA1YPR0 619 aa13.22□□□□□ -0.29
NUP50-206ENST00000422489 CARD11Q9BXL7 1154 aa13.22□□□□□ -0.29
NUP50-206ENST00000422489 POLR3AO14802 1390 aaPredicted RBP13.21□□□□□ -0.29
NUP50-206ENST00000422489 ONECUT3O60422 494 aaPredicted RBP13.21□□□□□ -0.29
NUP50-206ENST00000422489 NLRP13Q86W25 1043 aa13.21□□□□□ -0.29
NUP50-206ENST00000422489 CCDC125Q86Z20 511 aa13.21□□□□□ -0.29
NUP50-206ENST00000422489 KIAA1210Q9ULL0 1709 aa13.21□□□□□ -0.3
NUP50-206ENST00000422489 KIAA0232Q92628 1395 aa13.2□□□□□ -0.3
NUP50-206ENST00000422489 NLRP6P59044 892 aa13.2□□□□□ -0.3
NUP50-206ENST00000422489 KRT27Q7Z3Y8 459 aa13.2□□□□□ -0.3
NUP50-206ENST00000422489 SF3B2Q13435 895 aaKnown RBP13.19□□□□□ -0.3
NUP50-206ENST00000422489 GCP02774 474 aa13.18□□□□□ -0.3
NUP50-206ENST00000422489 USP35Q9P2H5 1018 aa13.18□□□□□ -0.3
NUP50-206ENST00000422489 MARF1Q9Y4F3 1742 aaKnown RBP13.18□□□□□ -0.3
NUP50-206ENST00000422489 SPATA31A5Q5VU36 1347 aa13.17□□□□□ -0.3
NUP50-206ENST00000422489 SPATA31A7Q8IWB4 1347 aa13.17□□□□□ -0.3
NUP50-206ENST00000422489 TRPM3Q9HCF6 1732 aaPredicted RBP13.17□□□□□ -0.3
NUP50-206ENST00000422489 GLI3P10071 1580 aa13.17□□□□□ -0.3
NUP50-206ENST00000422489 TMC1Q8TDI8 760 aa13.17□□□□□ -0.3
NUP50-206ENST00000422489 ZNF692Q9BU19 519 aaPredicted RBP13.17□□□□□ -0.3
NUP50-206ENST00000422489 FAM182BQ5T319 152 aa13.16□□□□□ -0.3
NUP50-206ENST00000422489 SOX12O15370 315 aa13.15□□□□□ -0.3
NUP50-206ENST00000422489 DEFB132Q7Z7B7 95 aa13.15□□□□□ -0.3
NUP50-206ENST00000422489 PCGF6Q9BYE7 350 aa13.15□□□□□ -0.3
NUP50-206ENST00000422489 ZRANB1Q9UGI0 708 aa13.15□□□□□ -0.3
NUP50-206ENST00000422489 ALS2Q96Q42 1657 aa13.15□□□□□ -0.31
NUP50-206ENST00000422489 LARP1Q6PKG0 1096 aaKnown RBP13.14□□□□□ -0.31
NUP50-206ENST00000422489 SPATA31A1Q5TZJ5 1347 aa13.13□□□□□ -0.31
NUP50-206ENST00000422489 TTC21BQ7Z4L5 1316 aa13.13□□□□□ -0.31
NUP50-206ENST00000422489 BRD4O60885 1362 aaPredicted RBP13.13□□□□□ -0.31
NUP50-206ENST00000422489 ITSN1Q15811 1721 aa13.13□□□□□ -0.31
NUP50-206ENST00000422489 TRPM1Q7Z4N2 1603 aa13.13□□□□□ -0.31
NUP50-206ENST00000422489 USP6P35125 1406 aa13.13□□□□□ -0.31
NUP50-206ENST00000422489 USP19O94966 1318 aa13.13□□□□□ -0.31
NUP50-206ENST00000422489 PLCH1Q4KWH8 1693 aa13.12□□□□□ -0.31
NUP50-206ENST00000422489 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.12□□□□□ -0.31
NUP50-206ENST00000422489 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.12□□□□□ -0.31
NUP50-206ENST00000422489 BLMP54132 1417 aaPredicted RBP13.12□□□□□ -0.31
NUP50-206ENST00000422489 COL14A1Q05707 1796 aaKnown RBP13.12□□□□□ -0.31
NUP50-206ENST00000422489 QRICH2Q9H0J4 1663 aa13.12□□□□□ -0.31
NUP50-206ENST00000422489 ABCA3Q99758 1704 aa13.11□□□□□ -0.31
NUP50-206ENST00000422489 KTN1Q86UP2 1357 aaKnown RBP13.11□□□□□ -0.31
NUP50-206ENST00000422489 PDE3BQ13370 1112 aa13.11□□□□□ -0.31
NUP50-206ENST00000422489 SLC12A5Q9H2X9 1139 aa13.11□□□□□ -0.31
NUP50-206ENST00000422489 NWD2Q9ULI1 1742 aa13.1□□□□□ -0.31
NUP50-206ENST00000422489 CPDO75976 1380 aa13.1□□□□□ -0.31
NUP50-206ENST00000422489 ST20-MTHFSA0A0A6YYL1 179 aa13.1□□□□□ -0.31
NUP50-206ENST00000422489 HDGFL2Q7Z4V5 671 aaPredicted RBP13.1□□□□□ -0.31
NUP50-206ENST00000422489 TCP11L2Q8N4U5 519 aa13.1□□□□□ -0.31
NUP50-206ENST00000422489 TOPAZ1Q8N9V7 1692 aa13.09□□□□□ -0.31
NUP50-206ENST00000422489 BAG6P46379 1132 aa13.09□□□□□ -0.31
NUP50-206ENST00000422489 KCNH5Q8NCM2 988 aa13.09□□□□□ -0.31
NUP50-206ENST00000422489 TTC21AQ8NDW8 1320 aa13.09□□□□□ -0.31
NUP50-206ENST00000422489 SSH2Q76I76 1423 aa13.08□□□□□ -0.32
NUP50-206ENST00000422489 CSB-PGBD3P0DP91 1061 aa13.08□□□□□ -0.32
NUP50-206ENST00000422489 BARGINQ6ZT62 677 aa13.08□□□□□ -0.32
NUP50-206ENST00000422489 TOM1L2Q6ZVM7 507 aa13.08□□□□□ -0.32
NUP50-206ENST00000422489 EN1Q05925 392 aaPredicted RBP13.07□□□□□ -0.32
NUP50-206ENST00000422489 TERF2IPQ9NYB0 399 aa13.07□□□□□ -0.32
NUP50-206ENST00000422489 AXIN2Q9Y2T1 843 aa13.07□□□□□ -0.32
NUP50-206ENST00000422489 CAMTA1Q9Y6Y1 1673 aa13.06□□□□□ -0.32
NUP50-206ENST00000422489 TRIM37O94972 964 aa13.06□□□□□ -0.32
NUP50-206ENST00000422489 FAM196AQ6ZSG2 479 aa13.06□□□□□ -0.32
NUP50-206ENST00000422489 ARHGEF25Q86VW2 580 aa13.06□□□□□ -0.32
NUP50-206ENST00000422489 NME9Q86XW9 330 aa13.06□□□□□ -0.32
NUP50-206ENST00000422489 THRAP3Q9Y2W1 955 aaKnown RBP13.06□□□□□ -0.32
NUP50-206ENST00000422489 AATKQ6ZMQ8 1374 aa13.06□□□□□ -0.32
NUP50-206ENST00000422489 NRAPQ86VF7 1730 aa13.05□□□□□ -0.32
NUP50-206ENST00000422489 SLC24A1O60721 1099 aa13.05□□□□□ -0.32
NUP50-206ENST00000422489 PHRF1Q9P1Y6 1649 aaKnown RBP13.05□□□□□ -0.32
NUP50-206ENST00000422489 SBNO2Q9Y2G9 1366 aa13.05□□□□□ -0.32
NUP50-206ENST00000422489 CPSF1Q10570 1443 aaKnown RBP13.05□□□□□ -0.32
NUP50-206ENST00000422489 APBA3O96018 575 aa13.04□□□□□ -0.32
NUP50-206ENST00000422489 PUS7Q96PZ0 661 aaKnown RBP13.04□□□□□ -0.32
NUP50-206ENST00000422489 TESK2Q96S53 571 aa13.04□□□□□ -0.32
NUP50-206ENST00000422489 CRYBG1Q9Y4K1 1723 aa13.04□□□□□ -0.32
NUP50-206ENST00000422489 NRKQ7Z2Y5 1582 aa13.03□□□□□ -0.32
NUP50-206ENST00000422489 BRWD3Q6RI45 1802 aa13.02□□□□□ -0.32
NUP50-206ENST00000422489 PSDA5PKW4 1024 aaPredicted RBP13.02□□□□□ -0.33
NUP50-206ENST00000422489 TMF1P82094 1093 aa13.02□□□□□ -0.33
NUP50-206ENST00000422489 DDB1Q16531 1140 aa13.02□□□□□ -0.33
NUP50-206ENST00000422489 CRB1P82279 1406 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms