RNA–Protein interactions for RNA: ENST00000417664.6

SSBP3-205, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 5 BASIC

Gene SSBP3, Length 1,666 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-205ENST00000417664 COL3A1P02461 1466 aaPredicted RBP22.15■■□□□ 1.14
SSBP3-205ENST00000417664 GOLGA2Q08379 1002 aa22.15■■□□□ 1.14
SSBP3-205ENST00000417664 CCDC146Q8IYE0 955 aa22.15■■□□□ 1.14
SSBP3-205ENST00000417664 ACEP12821 1306 aa22.15■■□□□ 1.14
SSBP3-205ENST00000417664 NCKAP5LQ9HCH0 1330 aa22.15■■□□□ 1.14
SSBP3-205ENST00000417664 COG3Q96JB2 828 aa22.14■■□□□ 1.14
SSBP3-205ENST00000417664 USP6P35125 1406 aa22.13■■□□□ 1.13
SSBP3-205ENST00000417664 NRKQ7Z2Y5 1582 aa22.13■■□□□ 1.13
SSBP3-205ENST00000417664 CDCA7LQ96GN5 454 aa22.12■■□□□ 1.13
SSBP3-205ENST00000417664 NKTRP30414 1462 aaKnown RBP22.11■■□□□ 1.13
SSBP3-205ENST00000417664 TTC21BQ7Z4L5 1316 aa22.11■■□□□ 1.13
SSBP3-205ENST00000417664 NME9Q86XW9 330 aa22.11■■□□□ 1.13
SSBP3-205ENST00000417664 PNNQ9H307 717 aaKnown RBP22.11■■□□□ 1.13
SSBP3-205ENST00000417664 RCAN3Q9UKA8 241 aa22.11■■□□□ 1.13
SSBP3-205ENST00000417664 TTC21AQ8NDW8 1320 aa22.11■■□□□ 1.13
SSBP3-205ENST00000417664 POLKQ9UBT6 870 aa22.11■■□□□ 1.13
SSBP3-205ENST00000417664 FMN2Q9NZ56 1722 aa22.1■■□□□ 1.13
SSBP3-205ENST00000417664 DIAPH1O60610 1272 aaKnown RBP22.1■■□□□ 1.13
SSBP3-205ENST00000417664 U2AF1L5P0DN76 240 aaPredicted RBP22.1■■□□□ 1.13
SSBP3-205ENST00000417664 U2AF1Q01081 240 aaKnown RBP eCLIP22.1■■□□□ 1.13
SSBP3-205ENST00000417664 IQSEC2Q5JU85 1478 aa22.1■■□□□ 1.13
SSBP3-205ENST00000417664 SSH2Q76I76 1423 aa22.09■■□□□ 1.13
SSBP3-205ENST00000417664 CCDC27Q2M243 656 aa22.08■■□□□ 1.13
SSBP3-205ENST00000417664 CDK12Q9NYV4 1490 aaPredicted RBP22.08■■□□□ 1.12
SSBP3-205ENST00000417664 SLFN5Q08AF3 891 aa22.07■■□□□ 1.12
SSBP3-205ENST00000417664 TRMT2AQ8IZ69 625 aaKnown RBP22.07■■□□□ 1.12
SSBP3-205ENST00000417664 NWD1Q149M9 1564 aa22.07■■□□□ 1.12
SSBP3-205ENST00000417664 MAP2P11137 1827 aaKnown RBP22.07■■□□□ 1.12
SSBP3-205ENST00000417664 NUTM2FA1L443 756 aa22.07■■□□□ 1.12
SSBP3-205ENST00000417664 E9PSI1 815 aa22.07■■□□□ 1.12
SSBP3-205ENST00000417664 DUSP27Q5VZP5 1158 aa22.07■■□□□ 1.12
SSBP3-205ENST00000417664 ADGRL3Q9HAR2 1447 aa22.06■■□□□ 1.12
SSBP3-205ENST00000417664 TCP11L2Q8N4U5 519 aa22.06■■□□□ 1.12
SSBP3-205ENST00000417664 PHF23Q9BUL5 403 aaPredicted RBP22.06■■□□□ 1.12
SSBP3-205ENST00000417664 PPP4R2Q9NY27 417 aa22.06■■□□□ 1.12
SSBP3-205ENST00000417664 OVOS2A0A0J9YW53 1432 aa22.05■■□□□ 1.12
SSBP3-205ENST00000417664 OVOS2Q6IE36 1432 aa22.05■■□□□ 1.12
SSBP3-205ENST00000417664 NGDNQ8NEJ9 315 aaKnown RBP22.05■■□□□ 1.12
SSBP3-205ENST00000417664 NALCNQ8IZF0 1738 aa22.04■■□□□ 1.12
SSBP3-205ENST00000417664 IRX6P78412 446 aaPredicted RBP22.04■■□□□ 1.12
SSBP3-205ENST00000417664 WWC1Q8IX03 1113 aa22.04■■□□□ 1.12
SSBP3-205ENST00000417664 U2SURPO15042 1029 aaKnown RBP22.03■■□□□ 1.12
SSBP3-205ENST00000417664 USP31Q70CQ4 1352 aa22.02■■□□□ 1.12
SSBP3-205ENST00000417664 FCHSD2O94868 740 aa22.02■■□□□ 1.12
SSBP3-205ENST00000417664 RRP1P56182 461 aaKnown RBP22.02■■□□□ 1.12
SSBP3-205ENST00000417664 WDR63Q8IWG1 891 aa22.02■■□□□ 1.12
SSBP3-205ENST00000417664 RGPD8O14715 1765 aaPredicted RBP22.02■■□□□ 1.12
SSBP3-205ENST00000417664 PLEKHF1Q96S99 279 aa22.01■■□□□ 1.11
SSBP3-205ENST00000417664 PMFBP1Q8TBY8 1022 aa22.01■■□□□ 1.11
SSBP3-205ENST00000417664 ZRANB1Q9UGI0 708 aa22.01■■□□□ 1.11
SSBP3-205ENST00000417664 MAPK8IP3Q9UPT6 1336 aa21.99■■□□□ 1.11
SSBP3-205ENST00000417664 PPM1GO15355 546 aaPredicted RBP21.98■■□□□ 1.11
SSBP3-205ENST00000417664 EMILIN1Q9Y6C2 1016 aa21.98■■□□□ 1.11
SSBP3-205ENST00000417664 LRRC7Q96NW7 1537 aa21.96■■□□□ 1.11
SSBP3-205ENST00000417664 NEFMP07197 916 aa21.96■■□□□ 1.11
SSBP3-205ENST00000417664 IL13P35225 146 aa21.96■■□□□ 1.11
SSBP3-205ENST00000417664 PHF8Q9UPP1 1060 aa21.95■■□□□ 1.1
SSBP3-205ENST00000417664 FBLN1P23142 703 aa21.95■■□□□ 1.1
SSBP3-205ENST00000417664 TMPOP42166 694 aaKnown RBP21.94■■□□□ 1.1
SSBP3-205ENST00000417664 USP54Q70EL1 1684 aa21.94■■□□□ 1.1
SSBP3-205ENST00000417664 NCOA3Q9Y6Q9 1424 aa21.93■■□□□ 1.1
SSBP3-205ENST00000417664 RRS1Q15050 365 aaKnown RBP21.93■■□□□ 1.1
SSBP3-205ENST00000417664 NEUROD2Q15784 382 aa21.93■■□□□ 1.1
SSBP3-205ENST00000417664 RSPH6AQ9H0K4 717 aa21.93■■□□□ 1.1
SSBP3-205ENST00000417664 SPINK5Q9NQ38 1064 aaPredicted RBP21.93■■□□□ 1.1
SSBP3-205ENST00000417664 RRP7AQ9Y3A4 280 aaKnown RBP21.92■■□□□ 1.1
SSBP3-205ENST00000417664 C14orf37Q86TY3 774 aa21.91■■□□□ 1.1
SSBP3-205ENST00000417664 PROSER2Q86WR7 435 aaPredicted RBP21.91■■□□□ 1.1
SSBP3-205ENST00000417664 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.91■■□□□ 1.1
SSBP3-205ENST00000417664 PIK3C2AO00443 1686 aa21.91■■□□□ 1.1
SSBP3-205ENST00000417664 KIF24Q5T7B8 1368 aa21.9■■□□□ 1.1
SSBP3-205ENST00000417664 IL16Q14005 1332 aa21.9■■□□□ 1.1
SSBP3-205ENST00000417664 MYH16Q9H6N6 1097 aa21.9■■□□□ 1.1
SSBP3-205ENST00000417664 DMRT2Q9Y5R5 561 aa21.89■■□□□ 1.1
SSBP3-205ENST00000417664 C19orf44Q9H6X5 657 aa21.88■■□□□ 1.09
SSBP3-205ENST00000417664 PRKAR2BP31323 418 aa21.88■■□□□ 1.09
SSBP3-205ENST00000417664 NLRP6P59044 892 aa21.87■■□□□ 1.09
SSBP3-205ENST00000417664 SBNO1A3KN83 1393 aa21.87■■□□□ 1.09
SSBP3-205ENST00000417664 DCCP43146 1447 aa21.86■■□□□ 1.09
SSBP3-205ENST00000417664 ESCO1Q5FWF5 840 aa21.86■■□□□ 1.09
SSBP3-205ENST00000417664 FLT4P35916 1363 aa21.86■■□□□ 1.09
SSBP3-205ENST00000417664 KDM4FA0A1W2PPD8 638 aa21.85■■□□□ 1.09
SSBP3-205ENST00000417664 RIPK4P57078 832 aa21.85■■□□□ 1.09
SSBP3-205ENST00000417664 RBM33Q96EV2 1170 aaKnown RBP21.85■■□□□ 1.09
SSBP3-205ENST00000417664 TRIM35Q9UPQ4 493 aa21.85■■□□□ 1.09
SSBP3-205ENST00000417664 CT47B1P0C2W7 299 aaPredicted RBP21.85■■□□□ 1.09
SSBP3-205ENST00000417664 ABTB2Q8N961 1025 aa21.85■■□□□ 1.09
SSBP3-205ENST00000417664 EIF4A2Q14240 407 aaKnown RBP21.84■■□□□ 1.09
SSBP3-205ENST00000417664 MAP3K19Q56UN5 1328 aa21.83■■□□□ 1.09
SSBP3-205ENST00000417664 PSME1Q06323 249 aa21.83■■□□□ 1.09
SSBP3-205ENST00000417664 NFE2L2Q16236 605 aa21.83■■□□□ 1.09
SSBP3-205ENST00000417664 PEAK1Q9H792 1746 aa21.82■■□□□ 1.08
SSBP3-205ENST00000417664 CALD1Q05682 793 aaKnown RBP21.82■■□□□ 1.08
SSBP3-205ENST00000417664 HMOX1P09601 288 aa21.82■■□□□ 1.08
SSBP3-205ENST00000417664 KIF1AQ12756 1690 aa21.82■■□□□ 1.08
SSBP3-205ENST00000417664 LMTK3Q96Q04 1460 aa21.81■■□□□ 1.08
SSBP3-205ENST00000417664 PAK3O75914 559 aaPredicted RBP21.81■■□□□ 1.08
SSBP3-205ENST00000417664 LMOD3Q0VAK6 560 aa21.81■■□□□ 1.08
SSBP3-205ENST00000417664 MARF1Q9Y4F3 1742 aaKnown RBP21.8■■□□□ 1.08
SSBP3-205ENST00000417664 CCDC136Q96JN2 1154 aa21.8■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 318.9 ms