RNA–Protein interactions for RNA: ENST00000416321.5

DEPDC4-203, Transcript of DEP domain containing 4, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene DEPDC4, Length 1,155 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-203ENST00000416321 TMEM94Q12767 1356 aa13.72□□□□□ -0.21
DEPDC4-203ENST00000416321 ATF3P18847 181 aa13.72□□□□□ -0.21
DEPDC4-203ENST00000416321 C19orf44Q9H6X5 657 aa13.72□□□□□ -0.21
DEPDC4-203ENST00000416321 CPSF1Q10570 1443 aaKnown RBP13.72□□□□□ -0.21
DEPDC4-203ENST00000416321 KIF20BQ96Q89 1820 aa13.71□□□□□ -0.21
DEPDC4-203ENST00000416321 ACEP12821 1306 aa13.71□□□□□ -0.21
DEPDC4-203ENST00000416321 MON2Q7Z3U7 1717 aa13.71□□□□□ -0.21
DEPDC4-203ENST00000416321 RGPD8O14715 1765 aaPredicted RBP13.71□□□□□ -0.22
DEPDC4-203ENST00000416321 MSH6P52701 1360 aa13.71□□□□□ -0.22
DEPDC4-203ENST00000416321 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.7□□□□□ -0.22
DEPDC4-203ENST00000416321 PMFBP1Q8TBY8 1022 aa13.7□□□□□ -0.22
DEPDC4-203ENST00000416321 ZNF335Q9H4Z2 1342 aaPredicted RBP13.69□□□□□ -0.22
DEPDC4-203ENST00000416321 PPP2R1AP30153 589 aa13.69□□□□□ -0.22
DEPDC4-203ENST00000416321 DCCP43146 1447 aa13.69□□□□□ -0.22
DEPDC4-203ENST00000416321 ANKRD26Q9UPS8 1709 aa13.69□□□□□ -0.22
DEPDC4-203ENST00000416321 ESCO1Q5FWF5 840 aa13.68□□□□□ -0.22
DEPDC4-203ENST00000416321 FAM9BQ8IZU0 186 aa13.68□□□□□ -0.22
DEPDC4-203ENST00000416321 GGNBP2Q9H3C7 697 aa13.68□□□□□ -0.22
DEPDC4-203ENST00000416321 PHF8Q9UPP1 1060 aa13.68□□□□□ -0.22
DEPDC4-203ENST00000416321 POLR3AO14802 1390 aaPredicted RBP13.68□□□□□ -0.22
DEPDC4-203ENST00000416321 USP6P35125 1406 aa13.67□□□□□ -0.22
DEPDC4-203ENST00000416321 TNNT2P45379 298 aaPredicted RBP13.67□□□□□ -0.22
DEPDC4-203ENST00000416321 CCDC184Q52MB2 194 aa13.67□□□□□ -0.22
DEPDC4-203ENST00000416321 CADPS2Q86UW7 1296 aa13.67□□□□□ -0.22
DEPDC4-203ENST00000416321 SPINK5Q9NQ38 1064 aaPredicted RBP13.67□□□□□ -0.22
DEPDC4-203ENST00000416321 LRRC7Q96NW7 1537 aa13.66□□□□□ -0.22
DEPDC4-203ENST00000416321 FYB1O15117 783 aa13.66□□□□□ -0.22
DEPDC4-203ENST00000416321 CENPBP07199 599 aaPredicted RBP13.66□□□□□ -0.22
DEPDC4-203ENST00000416321 COG3Q96JB2 828 aa13.66□□□□□ -0.22
DEPDC4-203ENST00000416321 TTC21BQ7Z4L5 1316 aa13.65□□□□□ -0.22
DEPDC4-203ENST00000416321 TTC21AQ8NDW8 1320 aa13.65□□□□□ -0.22
DEPDC4-203ENST00000416321 NRKQ7Z2Y5 1582 aa13.65□□□□□ -0.22
DEPDC4-203ENST00000416321 KIF1AQ12756 1690 aa13.65□□□□□ -0.22
DEPDC4-203ENST00000416321 NME9Q86XW9 330 aa13.64□□□□□ -0.23
DEPDC4-203ENST00000416321 CFAP53Q96M91 514 aa13.64□□□□□ -0.23
DEPDC4-203ENST00000416321 C1orf167Q5SNV9 1468 aa13.63□□□□□ -0.23
DEPDC4-203ENST00000416321 CAPN15O75808 1086 aa13.63□□□□□ -0.23
DEPDC4-203ENST00000416321 PSME1Q06323 249 aa13.63□□□□□ -0.23
DEPDC4-203ENST00000416321 MST1RQ04912 1400 aa13.63□□□□□ -0.23
DEPDC4-203ENST00000416321 XIRP1Q702N8 1843 aaKnown RBP13.62□□□□□ -0.23
DEPDC4-203ENST00000416321 PAK3O75914 559 aaPredicted RBP13.62□□□□□ -0.23
DEPDC4-203ENST00000416321 WDR43Q15061 677 aaKnown RBP eCLIP13.62□□□□□ -0.23
DEPDC4-203ENST00000416321 PNISRQ8TF01 805 aaKnown RBP13.61□□□□□ -0.23
DEPDC4-203ENST00000416321 MTHFSP49914 203 aa13.6□□□□□ -0.23
DEPDC4-203ENST00000416321 ORAI2Q96SN7 254 aa13.6□□□□□ -0.23
DEPDC4-203ENST00000416321 SSH2Q76I76 1423 aa13.59□□□□□ -0.23
DEPDC4-203ENST00000416321 HNRNPUQ00839 825 aaKnown RBP eCLIP13.59□□□□□ -0.23
DEPDC4-203ENST00000416321 FOXO3O43524 673 aa13.58□□□□□ -0.24
DEPDC4-203ENST00000416321 ABTB2Q8N961 1025 aa13.58□□□□□ -0.24
DEPDC4-203ENST00000416321 NLRP6P59044 892 aa13.57□□□□□ -0.24
DEPDC4-203ENST00000416321 ZRANB1Q9UGI0 708 aa13.57□□□□□ -0.24
DEPDC4-203ENST00000416321 NPHP3Q7Z494 1330 aa13.57□□□□□ -0.24
DEPDC4-203ENST00000416321 USP31Q70CQ4 1352 aa13.57□□□□□ -0.24
DEPDC4-203ENST00000416321 OVOS2A0A0J9YW53 1432 aa13.56□□□□□ -0.24
DEPDC4-203ENST00000416321 OVOS2Q6IE36 1432 aa13.56□□□□□ -0.24
DEPDC4-203ENST00000416321 PPM1GO15355 546 aaPredicted RBP13.56□□□□□ -0.24
DEPDC4-203ENST00000416321 KRT28Q7Z3Y7 464 aa13.56□□□□□ -0.24
DEPDC4-203ENST00000416321 NUDCQ9Y266 331 aa13.56□□□□□ -0.24
DEPDC4-203ENST00000416321 PIK3C2AO00443 1686 aa13.56□□□□□ -0.24
DEPDC4-203ENST00000416321 AATKQ6ZMQ8 1374 aa13.56□□□□□ -0.24
DEPDC4-203ENST00000416321 LMOD2Q6P5Q4 547 aa13.55□□□□□ -0.24
DEPDC4-203ENST00000416321 XPCQ01831 940 aaPredicted RBP13.54□□□□□ -0.24
DEPDC4-203ENST00000416321 SLAIN2Q9P270 581 aa13.54□□□□□ -0.24
DEPDC4-203ENST00000416321 INSRP06213 1382 aa13.54□□□□□ -0.24
DEPDC4-203ENST00000416321 MAP2P11137 1827 aaKnown RBP13.53□□□□□ -0.24
DEPDC4-203ENST00000416321 SOX12O15370 315 aa13.53□□□□□ -0.24
DEPDC4-203ENST00000416321 NUTM2GQ5VZR2 741 aa13.53□□□□□ -0.24
DEPDC4-203ENST00000416321 LTBP4Q8N2S1 1624 aa13.53□□□□□ -0.24
DEPDC4-203ENST00000416321 DIAPH1O60610 1272 aaKnown RBP13.52□□□□□ -0.25
DEPDC4-203ENST00000416321 DSG3P32926 999 aa13.52□□□□□ -0.25
DEPDC4-203ENST00000416321 BRINP3Q76B58 766 aa13.52□□□□□ -0.25
DEPDC4-203ENST00000416321 POLKQ9UBT6 870 aa13.52□□□□□ -0.25
DEPDC4-203ENST00000416321 ADAMTS8Q9UP79 889 aa13.52□□□□□ -0.25
DEPDC4-203ENST00000416321 CDK12Q9NYV4 1490 aaPredicted RBP13.52□□□□□ -0.25
DEPDC4-203ENST00000416321 USP54Q70EL1 1684 aa13.52□□□□□ -0.25
DEPDC4-203ENST00000416321 TRPM3Q9HCF6 1732 aaPredicted RBP13.51□□□□□ -0.25
DEPDC4-203ENST00000416321 SMG6Q86US8 1419 aaKnown RBP13.51□□□□□ -0.25
DEPDC4-203ENST00000416321 RRS1Q15050 365 aaKnown RBP13.51□□□□□ -0.25
DEPDC4-203ENST00000416321 EMILIN1Q9Y6C2 1016 aa13.51□□□□□ -0.25
DEPDC4-203ENST00000416321 SBNO1A3KN83 1393 aa13.5□□□□□ -0.25
DEPDC4-203ENST00000416321 U2SURPO15042 1029 aaKnown RBP13.5□□□□□ -0.25
DEPDC4-203ENST00000416321 ATXN8OSP0DMR3 200 aa13.5□□□□□ -0.25
DEPDC4-203ENST00000416321 KCNH5Q8NCM2 988 aa13.5□□□□□ -0.25
DEPDC4-203ENST00000416321 SHPRHQ149N8 1683 aa13.5□□□□□ -0.25
DEPDC4-203ENST00000416321 BLMP54132 1417 aaPredicted RBP13.49□□□□□ -0.25
DEPDC4-203ENST00000416321 ZBED9Q6R2W3 1325 aa13.49□□□□□ -0.25
DEPDC4-203ENST00000416321 U2AF1L5P0DN76 240 aaPredicted RBP13.49□□□□□ -0.25
DEPDC4-203ENST00000416321 FBLN1P23142 703 aa13.49□□□□□ -0.25
DEPDC4-203ENST00000416321 AMPHP49418 695 aa13.49□□□□□ -0.25
DEPDC4-203ENST00000416321 U2AF1Q01081 240 aaKnown RBP eCLIP13.49□□□□□ -0.25
DEPDC4-203ENST00000416321 COL3A1P02461 1466 aaPredicted RBP13.48□□□□□ -0.25
DEPDC4-203ENST00000416321 TNS3Q68CZ2 1445 aa13.48□□□□□ -0.25
DEPDC4-203ENST00000416321 PNPLA6Q8IY17 1366 aa13.48□□□□□ -0.25
DEPDC4-203ENST00000416321 PNNQ9H307 717 aaKnown RBP13.48□□□□□ -0.25
DEPDC4-203ENST00000416321 ZNF219Q9P2Y4 722 aaPredicted RBP13.48□□□□□ -0.25
DEPDC4-203ENST00000416321 MARF1Q9Y4F3 1742 aaKnown RBP13.47□□□□□ -0.25
DEPDC4-203ENST00000416321 ARHGEF10O15013 1369 aa13.47□□□□□ -0.25
DEPDC4-203ENST00000416321 NEFMP07197 916 aa13.47□□□□□ -0.25
DEPDC4-203ENST00000416321 DDX17Q92841 729 aaKnown RBP13.47□□□□□ -0.25
DEPDC4-203ENST00000416321 PXDNQ92626 1479 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 95.7 ms