RNA–Protein interactions for RNA: ENST00000416159.5

PDLIM2-208, Transcript of PDZ and LIM domain 2, humanhuman

TSL 5

Gene PDLIM2, Length 880 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-208ENST00000416159 GLI3P10071 1580 aa25.27■■□□□ 1.64
PDLIM2-208ENST00000416159 PLCH1Q4KWH8 1693 aa25.26■■□□□ 1.63
PDLIM2-208ENST00000416159 NBPF8Q3BBV2 869 aa25.26■■□□□ 1.63
PDLIM2-208ENST00000416159 CCDC9Q9Y3X0 531 aaKnown RBP25.26■■□□□ 1.63
PDLIM2-208ENST00000416159 POLR3AO14802 1390 aaPredicted RBP25.26■■□□□ 1.63
PDLIM2-208ENST00000416159 SRPK2P78362 688 aaKnown RBP25.25■■□□□ 1.63
PDLIM2-208ENST00000416159 TOPAZ1Q8N9V7 1692 aa25.23■■□□□ 1.63
PDLIM2-208ENST00000416159 CCDC125Q86Z20 511 aa25.22■■□□□ 1.63
PDLIM2-208ENST00000416159 BTG4Q9NY30 223 aa25.22■■□□□ 1.63
PDLIM2-208ENST00000416159 ONECUT3O60422 494 aaPredicted RBP25.21■■□□□ 1.63
PDLIM2-208ENST00000416159 SEPT12Q8IYM1 358 aa25.21■■□□□ 1.63
PDLIM2-208ENST00000416159 CABP2Q9NPB3 220 aa25.2■■□□□ 1.62
PDLIM2-208ENST00000416159 COL14A1Q05707 1796 aaKnown RBP25.2■■□□□ 1.62
PDLIM2-208ENST00000416159 TRPM1Q7Z4N2 1603 aa25.19■■□□□ 1.62
PDLIM2-208ENST00000416159 PRDM11Q9NQV5 511 aa25.19■■□□□ 1.62
PDLIM2-208ENST00000416159 CRYBG1Q9Y4K1 1723 aa25.19■■□□□ 1.62
PDLIM2-208ENST00000416159 ROCK2O75116 1388 aaKnown RBP25.18■■□□□ 1.62
PDLIM2-208ENST00000416159 QRICH2Q9H0J4 1663 aa25.18■■□□□ 1.62
PDLIM2-208ENST00000416159 NUTM2GQ5VZR2 741 aa25.17■■□□□ 1.62
PDLIM2-208ENST00000416159 PPIP5K1Q6PFW1 1433 aa25.17■■□□□ 1.62
PDLIM2-208ENST00000416159 NRAPQ86VF7 1730 aa25.16■■□□□ 1.62
PDLIM2-208ENST00000416159 ABTB2Q8N961 1025 aa25.16■■□□□ 1.62
PDLIM2-208ENST00000416159 EVC2Q86UK5 1308 aa25.15■■□□□ 1.62
PDLIM2-208ENST00000416159 BRWD3Q6RI45 1802 aa25.14■■□□□ 1.62
PDLIM2-208ENST00000416159 BRD4O60885 1362 aaPredicted RBP25.14■■□□□ 1.61
PDLIM2-208ENST00000416159 CABP1Q9NZU7 370 aa25.13■■□□□ 1.61
PDLIM2-208ENST00000416159 KIAA0232Q92628 1395 aa25.13■■□□□ 1.61
PDLIM2-208ENST00000416159 KRT27Q7Z3Y8 459 aa25.12■■□□□ 1.61
PDLIM2-208ENST00000416159 A0A0G2JS52 829 aa25.11■■□□□ 1.61
PDLIM2-208ENST00000416159 ZC3H6P61129 1189 aaKnown RBP25.11■■□□□ 1.61
PDLIM2-208ENST00000416159 MYT1Q01538 1121 aa25.11■■□□□ 1.61
PDLIM2-208ENST00000416159 FAM98CQ17RN3 349 aaKnown RBP25.11■■□□□ 1.61
PDLIM2-208ENST00000416159 NLRP13Q86W25 1043 aa25.11■■□□□ 1.61
PDLIM2-208ENST00000416159 PHRF1Q9P1Y6 1649 aaKnown RBP25.11■■□□□ 1.61
PDLIM2-208ENST00000416159 SPATA31A5Q5VU36 1347 aa25.11■■□□□ 1.61
PDLIM2-208ENST00000416159 SPATA31A7Q8IWB4 1347 aa25.11■■□□□ 1.61
PDLIM2-208ENST00000416159 TRIM26Q12899 539 aaPredicted RBP25.1■■□□□ 1.61
PDLIM2-208ENST00000416159 CHRNA2Q15822 529 aa25.1■■□□□ 1.61
PDLIM2-208ENST00000416159 BLMP54132 1417 aaPredicted RBP25.08■■□□□ 1.61
PDLIM2-208ENST00000416159 USP19O94966 1318 aa25.08■■□□□ 1.6
PDLIM2-208ENST00000416159 TONSLQ96HA7 1378 aa25.06■■□□□ 1.6
PDLIM2-208ENST00000416159 USP6P35125 1406 aa25.05■■□□□ 1.6
PDLIM2-208ENST00000416159 SF3B2Q13435 895 aaKnown RBP25.05■■□□□ 1.6
PDLIM2-208ENST00000416159 STRN4Q9NRL3 753 aa25.05■■□□□ 1.6
PDLIM2-208ENST00000416159 GCP02774 474 aa25.04■■□□□ 1.6
PDLIM2-208ENST00000416159 EVA1CP58658 441 aa25.04■■□□□ 1.6
PDLIM2-208ENST00000416159 ZNF692Q9BU19 519 aaPredicted RBP25.04■■□□□ 1.6
PDLIM2-208ENST00000416159 CARD11Q9BXL7 1154 aa25.04■■□□□ 1.6
PDLIM2-208ENST00000416159 CPDO75976 1380 aa25.04■■□□□ 1.6
PDLIM2-208ENST00000416159 SPATA31A1Q5TZJ5 1347 aa25.03■■□□□ 1.6
PDLIM2-208ENST00000416159 NRKQ7Z2Y5 1582 aa25.02■■□□□ 1.6
PDLIM2-208ENST00000416159 NLRP6P59044 892 aa25.02■■□□□ 1.6
PDLIM2-208ENST00000416159 ZRANB1Q9UGI0 708 aa25.02■■□□□ 1.6
PDLIM2-208ENST00000416159 EP400Q96L91 3159 aa25■■□□□ 1.59
PDLIM2-208ENST00000416159 SSH2Q76I76 1423 aa24.99■■□□□ 1.59
PDLIM2-208ENST00000416159 SBNO2Q9Y2G9 1366 aa24.99■■□□□ 1.59
PDLIM2-208ENST00000416159 DEFB132Q7Z7B7 95 aa24.97■■□□□ 1.59
PDLIM2-208ENST00000416159 THSD7AQ9UPZ6 1657 aa24.97■■□□□ 1.59
PDLIM2-208ENST00000416159 CAMTA1Q9Y6Y1 1673 aa24.97■■□□□ 1.59
PDLIM2-208ENST00000416159 TTC21BQ7Z4L5 1316 aa24.96■■□□□ 1.59
PDLIM2-208ENST00000416159 BARGINQ6ZT62 677 aa24.95■■□□□ 1.58
PDLIM2-208ENST00000416159 USP35Q9P2H5 1018 aa24.95■■□□□ 1.58
PDLIM2-208ENST00000416159 LMO7Q8WWI1 1683 aa24.94■■□□□ 1.58
PDLIM2-208ENST00000416159 LARP1Q6PKG0 1096 aaKnown RBP24.94■■□□□ 1.58
PDLIM2-208ENST00000416159 TTC21AQ8NDW8 1320 aa24.93■■□□□ 1.58
PDLIM2-208ENST00000416159 TCP11L2Q8N4U5 519 aa24.93■■□□□ 1.58
PDLIM2-208ENST00000416159 CPSF1Q10570 1443 aaKnown RBP24.93■■□□□ 1.58
PDLIM2-208ENST00000416159 AKAP12Q02952 1782 aa24.93■■□□□ 1.58
PDLIM2-208ENST00000416159 SLIT3O75094 1523 aa24.92■■□□□ 1.58
PDLIM2-208ENST00000416159 ZBTB7CA1YPR0 619 aa24.92■■□□□ 1.58
PDLIM2-208ENST00000416159 BAG6P46379 1132 aa24.92■■□□□ 1.58
PDLIM2-208ENST00000416159 FAM182BQ5T319 152 aa24.91■■□□□ 1.58
PDLIM2-208ENST00000416159 THRAP3Q9Y2W1 955 aaKnown RBP24.91■■□□□ 1.58
PDLIM2-208ENST00000416159 AATKQ6ZMQ8 1374 aa24.91■■□□□ 1.58
PDLIM2-208ENST00000416159 KTN1Q86UP2 1357 aaKnown RBP24.91■■□□□ 1.58
PDLIM2-208ENST00000416159 KCNH5Q8NCM2 988 aa24.9■■□□□ 1.58
PDLIM2-208ENST00000416159 PIK3C2AO00443 1686 aa24.9■■□□□ 1.58
PDLIM2-208ENST00000416159 COL5A2P05997 1499 aaPredicted RBP24.89■■□□□ 1.57
PDLIM2-208ENST00000416159 FAM196AQ6ZSG2 479 aa24.88■■□□□ 1.57
PDLIM2-208ENST00000416159 PDE3BQ13370 1112 aa24.87■■□□□ 1.57
PDLIM2-208ENST00000416159 PUS7Q96PZ0 661 aaKnown RBP24.87■■□□□ 1.57
PDLIM2-208ENST00000416159 TMC1Q8TDI8 760 aa24.86■■□□□ 1.57
PDLIM2-208ENST00000416159 ARHGEF25Q86VW2 580 aa24.85■■□□□ 1.57
PDLIM2-208ENST00000416159 CRB1P82279 1406 aa24.85■■□□□ 1.57
PDLIM2-208ENST00000416159 RGPD1P0DJD0 1748 aa24.84■■□□□ 1.57
PDLIM2-208ENST00000416159 SLC24A1O60721 1099 aa24.84■■□□□ 1.57
PDLIM2-208ENST00000416159 HDGFL2Q7Z4V5 671 aaPredicted RBP24.84■■□□□ 1.57
PDLIM2-208ENST00000416159 SLC12A5Q9H2X9 1139 aa24.83■■□□□ 1.57
PDLIM2-208ENST00000416159 EN1Q05925 392 aaPredicted RBP24.82■■□□□ 1.56
PDLIM2-208ENST00000416159 MON2Q7Z3U7 1717 aa24.82■■□□□ 1.56
PDLIM2-208ENST00000416159 SUGP2Q8IX01 1082 aaKnown RBP eCLIP24.82■■□□□ 1.56
PDLIM2-208ENST00000416159 AXIN2Q9Y2T1 843 aa24.82■■□□□ 1.56
PDLIM2-208ENST00000416159 COL18A1P39060 1754 aa24.82■■□□□ 1.56
PDLIM2-208ENST00000416159 SOX12O15370 315 aa24.81■■□□□ 1.56
PDLIM2-208ENST00000416159 TOM1L2Q6ZVM7 507 aa24.81■■□□□ 1.56
PDLIM2-208ENST00000416159 TERF2IPQ9NYB0 399 aa24.81■■□□□ 1.56
PDLIM2-208ENST00000416159 ST20-MTHFSA0A0A6YYL1 179 aa24.8■■□□□ 1.56
PDLIM2-208ENST00000416159 TRIM37O94972 964 aa24.8■■□□□ 1.56
PDLIM2-208ENST00000416159 CD163L1Q9NR16 1453 aa24.8■■□□□ 1.56
PDLIM2-208ENST00000416159 WDR17Q8IZU2 1322 aa24.8■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms