RNA–Protein interactions for RNA: ENST00000416159.5

PDLIM2-208, Transcript of PDZ and LIM domain 2, humanhuman

TSL 5

Gene PDLIM2, Length 880 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-208ENST00000416159 NISCHQ9Y2I1 1504 aa43.57■■■■■ 4.56
PDLIM2-208ENST00000416159 CCDC180Q9P1Z9 1646 aa38.96■■■■□ 3.83
PDLIM2-208ENST00000416159 ABCC9O60706 1549 aa38.69■■■■□ 3.78
PDLIM2-208ENST00000416159 RB1CC1Q8TDY2 1594 aa36.97■■■■□ 3.51
PDLIM2-208ENST00000416159 NACADO15069 1562 aa36.8■■■■□ 3.48
PDLIM2-208ENST00000416159 DCAF8L2P0C7V8 631 aa36.71■■■■□ 3.47
PDLIM2-208ENST00000416159 MYO15BQ96JP2 1530 aa36.4■■■■□ 3.42
PDLIM2-208ENST00000416159 ZCCHC6Q5VYS8 1495 aaKnown RBP36.15■■■■□ 3.38
PDLIM2-208ENST00000416159 PABPN1Q86U42 306 aaKnown RBP eCLIP36.09■■■■□ 3.37
PDLIM2-208ENST00000416159 DNAJC5BQ9UF47 199 aa36.07■■■■□ 3.36
PDLIM2-208ENST00000416159 UNC13AQ9UPW8 1703 aa36.07■■■■□ 3.36
PDLIM2-208ENST00000416159 DCAF1Q9Y4B6 1507 aa36.02■■■■□ 3.36
PDLIM2-208ENST00000416159 BICRAQ9NZM4 1560 aa35.84■■■■□ 3.33
PDLIM2-208ENST00000416159 SCRIBQ14160 1630 aa35.48■■■■□ 3.27
PDLIM2-208ENST00000416159 SHROOM4Q9ULL8 1493 aa35.46■■■■□ 3.27
PDLIM2-208ENST00000416159 CC2D2AQ9P2K1 1620 aa34.96■■■■□ 3.19
PDLIM2-208ENST00000416159 EIF4G1Q04637 1599 aaKnown RBP34.96■■■■□ 3.19
PDLIM2-208ENST00000416159 CECR2Q9BXF3 1484 aa34.84■■■■□ 3.17
PDLIM2-208ENST00000416159 NCAPD3P42695 1498 aa33.98■■■■□ 3.03
PDLIM2-208ENST00000416159 SMARCA4P51532 1647 aa33.9■■■■□ 3.02
PDLIM2-208ENST00000416159 ATAD2BQ9ULI0 1458 aa33.89■■■■□ 3.02
PDLIM2-208ENST00000416159 SMARCA2P51531 1590 aa33.83■■■■□ 3.01
PDLIM2-208ENST00000416159 BAZ1AQ9NRL2 1556 aaPredicted RBP33.81■■■■□ 3
PDLIM2-208ENST00000416159 HMGXB3Q12766 1538 aa33.72■■■□□ 2.99
PDLIM2-208ENST00000416159 PEG3Q9GZU2 1588 aa33.59■■■□□ 2.97
PDLIM2-208ENST00000416159 BAZ1BQ9UIG0 1483 aaKnown RBP33.57■■■□□ 2.97
PDLIM2-208ENST00000416159 MROH2BQ7Z745 1585 aa33.55■■■□□ 2.96
PDLIM2-208ENST00000416159 ERCC6Q03468 1493 aa33.41■■■□□ 2.94
PDLIM2-208ENST00000416159 NESP48681 1621 aa33.3■■■□□ 2.92
PDLIM2-208ENST00000416159 CUX2O14529 1486 aa33.27■■■□□ 2.92
PDLIM2-208ENST00000416159 LAMC3Q9Y6N6 1575 aa33.15■■■□□ 2.9
PDLIM2-208ENST00000416159 WIZO95785 1651 aa33.14■■■□□ 2.9
PDLIM2-208ENST00000416159 PDS5BQ9NTI5 1447 aa32.99■■■□□ 2.87
PDLIM2-208ENST00000416159 RSF1Q96T23 1441 aaPredicted RBP32.98■■■□□ 2.87
PDLIM2-208ENST00000416159 CADPSQ9ULU8 1353 aa32.97■■■□□ 2.87
PDLIM2-208ENST00000416159 DNAJC5Q9H3Z4 198 aa32.97■■■□□ 2.87
PDLIM2-208ENST00000416159 THOC2Q8NI27 1593 aaKnown RBP32.89■■■□□ 2.86
PDLIM2-208ENST00000416159 KIF21AQ7Z4S6 1674 aa32.86■■■□□ 2.85
PDLIM2-208ENST00000416159 TOP2AP11388 1531 aaKnown RBP32.77■■■□□ 2.84
PDLIM2-208ENST00000416159 MRC2Q9UBG0 1479 aa32.65■■■□□ 2.82
PDLIM2-208ENST00000416159 CFTRP13569 1480 aa32.63■■■□□ 2.81
PDLIM2-208ENST00000416159 CEP164Q9UPV0 1460 aa32.57■■■□□ 2.8
PDLIM2-208ENST00000416159 FANCD2Q9BXW9 1451 aa32.56■■■□□ 2.8
PDLIM2-208ENST00000416159 WDR62O43379 1518 aa32.54■■■□□ 2.8
PDLIM2-208ENST00000416159 CCDC88BA6NC98 1476 aa32.42■■■□□ 2.78
PDLIM2-208ENST00000416159 PRDM2Q13029 1718 aa32.29■■■□□ 2.76
PDLIM2-208ENST00000416159 URB2Q14146 1524 aaKnown RBP32.26■■■□□ 2.75
PDLIM2-208ENST00000416159 ABCC8Q09428 1581 aa31.98■■■□□ 2.71
PDLIM2-208ENST00000416159 TOPBP1Q92547 1522 aa31.97■■■□□ 2.71
PDLIM2-208ENST00000416159 IFT140Q96RY7 1462 aa31.94■■■□□ 2.7
PDLIM2-208ENST00000416159 DNMBPQ6XZF7 1577 aa31.88■■■□□ 2.69
PDLIM2-208ENST00000416159 OSCARQ8IYS5 282 aa31.85■■■□□ 2.69
PDLIM2-208ENST00000416159 ZNF608Q9ULD9 1512 aaPredicted RBP31.8■■■□□ 2.68
PDLIM2-208ENST00000416159 SUPT5HO00267 1087 aaKnown RBP31.76■■■□□ 2.67
PDLIM2-208ENST00000416159 POLA1P09884 1462 aaPredicted RBP31.66■■■□□ 2.66
PDLIM2-208ENST00000416159 TARBP1Q13395 1621 aaKnown RBP31.64■■■□□ 2.66
PDLIM2-208ENST00000416159 EIF4G3O43432 1585 aaKnown RBP31.63■■■□□ 2.65
PDLIM2-208ENST00000416159 TRIM41Q8WV44 630 aa31.61■■■□□ 2.65
PDLIM2-208ENST00000416159 AQRO60306 1485 aaKnown RBP eCLIP31.59■■■□□ 2.65
PDLIM2-208ENST00000416159 SOGA1O94964 1423 aa31.56■■■□□ 2.64
PDLIM2-208ENST00000416159 RAD54L2Q9Y4B4 1467 aa31.53■■■□□ 2.64
PDLIM2-208ENST00000416159 CUX1P39880 1505 aa31.5■■■□□ 2.63
PDLIM2-208ENST00000416159 FGD5Q6ZNL6 1462 aa31.5■■■□□ 2.63
PDLIM2-208ENST00000416159 TDRD9Q8NDG6 1382 aaKnown RBP31.44■■■□□ 2.62
PDLIM2-208ENST00000416159 WDR97A6NE52 1622 aa31.38■■■□□ 2.61
PDLIM2-208ENST00000416159 FBLN2P98095 1184 aa31.36■■■□□ 2.61
PDLIM2-208ENST00000416159 CHD1O14646 1710 aa31.34■■■□□ 2.61
PDLIM2-208ENST00000416159 RIMBP3CA6NJZ7 1639 aa31.31■■■□□ 2.6
PDLIM2-208ENST00000416159 RIMBP3BA6NNM3 1639 aa31.31■■■□□ 2.6
PDLIM2-208ENST00000416159 RIMBP3Q9UFD9 1639 aa31.31■■■□□ 2.6
PDLIM2-208ENST00000416159 SNAPC4Q5SXM2 1469 aa31.26■■■□□ 2.59
PDLIM2-208ENST00000416159 ARHGEF11O15085 1522 aa31.25■■■□□ 2.59
PDLIM2-208ENST00000416159 GRIN2BQ13224 1484 aa31.25■■■□□ 2.59
PDLIM2-208ENST00000416159 MAGI1Q96QZ7 1491 aaPredicted RBP31.21■■■□□ 2.59
PDLIM2-208ENST00000416159 CHMP7Q8WUX9 453 aaPredicted RBP31.2■■■□□ 2.59
PDLIM2-208ENST00000416159 ABCA10Q8WWZ4 1543 aa31.19■■■□□ 2.58
PDLIM2-208ENST00000416159 GAPVD1Q14C86 1478 aa31.17■■■□□ 2.58
PDLIM2-208ENST00000416159 WRNQ14191 1432 aaPredicted RBP eCLIP31.12■■■□□ 2.57
PDLIM2-208ENST00000416159 SYNJ2O15056 1496 aa31.1■■■□□ 2.57
PDLIM2-208ENST00000416159 PBRM1Q86U86 1689 aa31.08■■■□□ 2.57
PDLIM2-208ENST00000416159 TOP2BQ02880 1626 aa31.08■■■□□ 2.57
PDLIM2-208ENST00000416159 BIVM-ERCC5R4GMW8 1640 aa31.07■■■□□ 2.56
PDLIM2-208ENST00000416159 ABCA5Q8WWZ7 1642 aa31.06■■■□□ 2.56
PDLIM2-208ENST00000416159 CYB5RLQ6IPT4 315 aa31.06■■■□□ 2.56
PDLIM2-208ENST00000416159 SYNJ1O43426 1573 aa31.05■■■□□ 2.56
PDLIM2-208ENST00000416159 CLASP1Q7Z460 1538 aa31■■■□□ 2.55
PDLIM2-208ENST00000416159 ARAP1Q96P48 1450 aa30.96■■■□□ 2.55
PDLIM2-208ENST00000416159 GRIN2AQ12879 1464 aa30.82■■■□□ 2.52
PDLIM2-208ENST00000416159 ADAMTS12P58397 1594 aa30.81■■■□□ 2.52
PDLIM2-208ENST00000416159 FHAD1B1AJZ9 1412 aa30.8■■■□□ 2.52
PDLIM2-208ENST00000416159 ERICH3Q5RHP9 1530 aa30.79■■■□□ 2.52
PDLIM2-208ENST00000416159 NUP160Q12769 1436 aa30.72■■■□□ 2.51
PDLIM2-208ENST00000416159 CEP170Q5SW79 1584 aa30.66■■■□□ 2.5
PDLIM2-208ENST00000416159 TRHP20396 242 aaPredicted RBP30.63■■■□□ 2.49
PDLIM2-208ENST00000416159 KIF27Q86VH2 1401 aa30.53■■■□□ 2.48
PDLIM2-208ENST00000416159 SHROOM2Q13796 1616 aa30.52■■■□□ 2.48
PDLIM2-208ENST00000416159 ERCC6L2Q5T890 1561 aa30.52■■■□□ 2.48
PDLIM2-208ENST00000416159 IGF1RP08069 1367 aa30.49■■■□□ 2.47
PDLIM2-208ENST00000416159 JPH4Q96JJ6 628 aa30.46■■■□□ 2.47
PDLIM2-208ENST00000416159 PRG4Q92954 1404 aaPredicted RBP30.4■■■□□ 2.46
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms