RNA–Protein interactions for RNA: ENST00000410093.5

LIMS1-205, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,526 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-205ENST00000410093 MTHFSP49914 203 aa17.78■□□□□ 0.44
LIMS1-205ENST00000410093 C14orf37Q86TY3 774 aa17.78■□□□□ 0.44
LIMS1-205ENST00000410093 PNNQ9H307 717 aaKnown RBP17.78■□□□□ 0.44
LIMS1-205ENST00000410093 APAF1O14727 1248 aa17.77■□□□□ 0.44
LIMS1-205ENST00000410093 RBM33Q96EV2 1170 aaKnown RBP17.77■□□□□ 0.44
LIMS1-205ENST00000410093 SAFB2Q14151 953 aaKnown RBP eCLIP17.77■□□□□ 0.43
LIMS1-205ENST00000410093 MSH6P52701 1360 aa17.76■□□□□ 0.43
LIMS1-205ENST00000410093 PIK3R4Q99570 1358 aa17.76■□□□□ 0.43
LIMS1-205ENST00000410093 ADGRB2O60241 1585 aa17.76■□□□□ 0.43
LIMS1-205ENST00000410093 DIP2AQ14689 1571 aa17.76■□□□□ 0.43
LIMS1-205ENST00000410093 WDR63Q8IWG1 891 aa17.76■□□□□ 0.43
LIMS1-205ENST00000410093 ADAMTS13Q76LX8 1427 aa17.74■□□□□ 0.43
LIMS1-205ENST00000410093 WASLO00401 505 aaPredicted RBP17.74■□□□□ 0.43
LIMS1-205ENST00000410093 RBM19Q9Y4C8 960 aaKnown RBP17.74■□□□□ 0.43
LIMS1-205ENST00000410093 NWD1Q149M9 1564 aa17.74■□□□□ 0.43
LIMS1-205ENST00000410093 CDC42BPGQ6DT37 1551 aa17.74■□□□□ 0.43
LIMS1-205ENST00000410093 FYB1O15117 783 aa17.73■□□□□ 0.43
LIMS1-205ENST00000410093 CCDC146Q8IYE0 955 aa17.73■□□□□ 0.43
LIMS1-205ENST00000410093 AMOTL2Q9Y2J4 779 aa17.73■□□□□ 0.43
LIMS1-205ENST00000410093 METP08581 1390 aa17.73■□□□□ 0.43
LIMS1-205ENST00000410093 CPSF1Q10570 1443 aaKnown RBP17.73■□□□□ 0.43
LIMS1-205ENST00000410093 EDC4Q6P2E9 1401 aaKnown RBP17.73■□□□□ 0.43
LIMS1-205ENST00000410093 CHD2O14647 1828 aaKnown RBP17.72■□□□□ 0.43
LIMS1-205ENST00000410093 ITSN1Q15811 1721 aa17.72■□□□□ 0.43
LIMS1-205ENST00000410093 MON2Q7Z3U7 1717 aa17.72■□□□□ 0.43
LIMS1-205ENST00000410093 AKAP12Q02952 1782 aa17.72■□□□□ 0.43
LIMS1-205ENST00000410093 SENP3-EIF4A1A0A087X0R7 540 aa17.72■□□□□ 0.43
LIMS1-205ENST00000410093 PNPLA6Q8IY17 1366 aa17.71■□□□□ 0.43
LIMS1-205ENST00000410093 WWC1Q8IX03 1113 aa17.71■□□□□ 0.43
LIMS1-205ENST00000410093 CABP1Q9NZU7 370 aa17.71■□□□□ 0.43
LIMS1-205ENST00000410093 COL3A1P02461 1466 aaPredicted RBP17.71■□□□□ 0.43
LIMS1-205ENST00000410093 ZNF692Q9BU19 519 aaPredicted RBP17.7■□□□□ 0.42
LIMS1-205ENST00000410093 XIRP1Q702N8 1843 aaKnown RBP17.7■□□□□ 0.42
LIMS1-205ENST00000410093 NCOA3Q9Y6Q9 1424 aa17.69■□□□□ 0.42
LIMS1-205ENST00000410093 ATF3P18847 181 aa17.69■□□□□ 0.42
LIMS1-205ENST00000410093 TNNT2P45379 298 aaPredicted RBP17.69■□□□□ 0.42
LIMS1-205ENST00000410093 CCDC61Q9Y6R9 512 aa17.69■□□□□ 0.42
LIMS1-205ENST00000410093 PPIP5K1Q6PFW1 1433 aa17.68■□□□□ 0.42
LIMS1-205ENST00000410093 WAPLQ7Z5K2 1190 aa17.68■□□□□ 0.42
LIMS1-205ENST00000410093 EXOC6Q8TAG9 804 aa17.68■□□□□ 0.42
LIMS1-205ENST00000410093 CT47B1P0C2W7 299 aaPredicted RBP17.67■□□□□ 0.42
LIMS1-205ENST00000410093 TCP11L2Q8N4U5 519 aa17.67■□□□□ 0.42
LIMS1-205ENST00000410093 C19orf44Q9H6X5 657 aa17.67■□□□□ 0.42
LIMS1-205ENST00000410093 SLAIN2Q9P270 581 aa17.67■□□□□ 0.42
LIMS1-205ENST00000410093 AATKQ6ZMQ8 1374 aa17.67■□□□□ 0.42
LIMS1-205ENST00000410093 FANCIQ9NVI1 1328 aa17.67■□□□□ 0.42
LIMS1-205ENST00000410093 AAMPQ13685 434 aa17.67■□□□□ 0.42
LIMS1-205ENST00000410093 CADPS2Q86UW7 1296 aa17.67■□□□□ 0.42
LIMS1-205ENST00000410093 GGNBP2Q9H3C7 697 aa17.67■□□□□ 0.42
LIMS1-205ENST00000410093 U2AF1L5P0DN76 240 aaPredicted RBP17.66■□□□□ 0.42
LIMS1-205ENST00000410093 U2AF1Q01081 240 aaKnown RBP eCLIP17.66■□□□□ 0.42
LIMS1-205ENST00000410093 MYH16Q9H6N6 1097 aa17.66■□□□□ 0.42
LIMS1-205ENST00000410093 TOPAZ1Q8N9V7 1692 aa17.65■□□□□ 0.42
LIMS1-205ENST00000410093 DIAPH1O60610 1272 aaKnown RBP17.64■□□□□ 0.41
LIMS1-205ENST00000410093 NUDT16Q96DE0 195 aaKnown RBP17.64■□□□□ 0.41
LIMS1-205ENST00000410093 PTCH1Q13635 1447 aa17.64■□□□□ 0.41
LIMS1-205ENST00000410093 IL16Q14005 1332 aa17.64■□□□□ 0.41
LIMS1-205ENST00000410093 MAP2P11137 1827 aaKnown RBP17.63■□□□□ 0.41
LIMS1-205ENST00000410093 PDE3AQ14432 1141 aa17.63■□□□□ 0.41
LIMS1-205ENST00000410093 PTPRUQ92729 1446 aa17.63■□□□□ 0.41
LIMS1-205ENST00000410093 TCERG1O14776 1098 aaKnown RBP17.62■□□□□ 0.41
LIMS1-205ENST00000410093 CDK12Q9NYV4 1490 aaPredicted RBP17.62■□□□□ 0.41
LIMS1-205ENST00000410093 MAPK8IP3Q9UPT6 1336 aa17.62■□□□□ 0.41
LIMS1-205ENST00000410093 FCHSD2O94868 740 aa17.62■□□□□ 0.41
LIMS1-205ENST00000410093 MS4A1P11836 297 aa17.62■□□□□ 0.41
LIMS1-205ENST00000410093 NEFMP07197 916 aa17.61■□□□□ 0.41
LIMS1-205ENST00000410093 CRBNQ96SW2 442 aa17.61■□□□□ 0.41
LIMS1-205ENST00000410093 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.6■□□□□ 0.41
LIMS1-205ENST00000410093 PLEKHF1Q96S99 279 aa17.6■□□□□ 0.41
LIMS1-205ENST00000410093 ROBO2Q9HCK4 1378 aa17.6■□□□□ 0.41
LIMS1-205ENST00000410093 PLEKHG3A1L390 1219 aa17.59■□□□□ 0.41
LIMS1-205ENST00000410093 ROBO1Q9Y6N7 1651 aa17.58■□□□□ 0.41
LIMS1-205ENST00000410093 SPINK5Q9NQ38 1064 aaPredicted RBP17.58■□□□□ 0.41
LIMS1-205ENST00000410093 NRKQ7Z2Y5 1582 aa17.58■□□□□ 0.4
LIMS1-205ENST00000410093 PLIN1O60240 522 aa17.57■□□□□ 0.4
LIMS1-205ENST00000410093 CENPQQ7L2Z9 268 aaPredicted RBP17.57■□□□□ 0.4
LIMS1-205ENST00000410093 COG3Q96JB2 828 aa17.57■□□□□ 0.4
LIMS1-205ENST00000410093 XRN1Q8IZH2 1706 aaKnown RBP17.57■□□□□ 0.4
LIMS1-205ENST00000410093 U2SURPO15042 1029 aaKnown RBP17.57■□□□□ 0.4
LIMS1-205ENST00000410093 TMPOP42166 694 aaKnown RBP17.56■□□□□ 0.4
LIMS1-205ENST00000410093 MYT1Q01538 1121 aa17.56■□□□□ 0.4
LIMS1-205ENST00000410093 CALD1Q05682 793 aaKnown RBP17.56■□□□□ 0.4
LIMS1-205ENST00000410093 POLKQ9UBT6 870 aa17.56■□□□□ 0.4
LIMS1-205ENST00000410093 DCCP43146 1447 aa17.56■□□□□ 0.4
LIMS1-205ENST00000410093 MED1Q15648 1581 aaPredicted RBP17.55■□□□□ 0.4
LIMS1-205ENST00000410093 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.54■□□□□ 0.4
LIMS1-205ENST00000410093 ILDR2Q71H61 639 aa17.53■□□□□ 0.4
LIMS1-205ENST00000410093 NALCNQ8IZF0 1738 aa17.53■□□□□ 0.4
LIMS1-205ENST00000410093 ANKARQ7Z5J8 1434 aa17.53■□□□□ 0.4
LIMS1-205ENST00000410093 NEUROD2Q15784 382 aa17.52■□□□□ 0.4
LIMS1-205ENST00000410093 ZNF428Q96B54 188 aa17.52■□□□□ 0.4
LIMS1-205ENST00000410093 TTC21AQ8NDW8 1320 aa17.52■□□□□ 0.4
LIMS1-205ENST00000410093 ADGRL3Q9HAR2 1447 aa17.52■□□□□ 0.4
LIMS1-205ENST00000410093 RARSP54136 660 aaKnown RBP17.52■□□□□ 0.39
LIMS1-205ENST00000410093 RRP7AQ9Y3A4 280 aaKnown RBP17.52■□□□□ 0.39
LIMS1-205ENST00000410093 KDM2BQ8NHM5 1336 aa17.51■□□□□ 0.39
LIMS1-205ENST00000410093 CANXP27824 592 aaKnown RBP17.51■□□□□ 0.39
LIMS1-205ENST00000410093 PRR36Q9H6K5 1346 aa17.51■□□□□ 0.39
LIMS1-205ENST00000410093 USP6P35125 1406 aa17.5■□□□□ 0.39
LIMS1-205ENST00000410093 PHLPP1O60346 1717 aa17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 102.7 ms