RNA–Protein interactions for RNA: ENST00000409860.1

C4orf48-202, Transcript of chromosome 4 open reading frame 48, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene C4orf48, Length 477 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C4orf48-202ENST00000409860 TNS3Q68CZ2 1445 aa28.38■■■□□ 2.13
C4orf48-202ENST00000409860 TTC21BQ7Z4L5 1316 aa28.38■■■□□ 2.13
C4orf48-202ENST00000409860 MON2Q7Z3U7 1717 aa28.38■■■□□ 2.13
C4orf48-202ENST00000409860 SSH2Q76I76 1423 aa28.37■■■□□ 2.13
C4orf48-202ENST00000409860 COL16A1Q07092 1604 aaPredicted RBP28.37■■■□□ 2.13
C4orf48-202ENST00000409860 SPATA31A3Q5VYP0 1347 aa28.37■■■□□ 2.13
C4orf48-202ENST00000409860 TTC21AQ8NDW8 1320 aa28.37■■■□□ 2.13
C4orf48-202ENST00000409860 NSD3Q9BZ95 1437 aa28.36■■■□□ 2.13
C4orf48-202ENST00000409860 CARD14Q9BXL6 1004 aa28.35■■■□□ 2.13
C4orf48-202ENST00000409860 TRPM3Q9HCF6 1732 aaPredicted RBP28.35■■■□□ 2.13
C4orf48-202ENST00000409860 LMOD2Q6P5Q4 547 aa28.34■■■□□ 2.13
C4orf48-202ENST00000409860 SUGP2Q8IX01 1082 aaKnown RBP eCLIP28.34■■■□□ 2.13
C4orf48-202ENST00000409860 ARHGEF10O15013 1369 aa28.34■■■□□ 2.13
C4orf48-202ENST00000409860 NRKQ7Z2Y5 1582 aa28.33■■■□□ 2.13
C4orf48-202ENST00000409860 DDX10Q13206 875 aaKnown RBP28.31■■■□□ 2.12
C4orf48-202ENST00000409860 ABTB2Q8N961 1025 aa28.31■■■□□ 2.12
C4orf48-202ENST00000409860 KNSTRNQ9Y448 316 aa28.31■■■□□ 2.12
C4orf48-202ENST00000409860 JCADQ9P266 1359 aa28.29■■■□□ 2.12
C4orf48-202ENST00000409860 CGNL1Q0VF96 1302 aa28.29■■■□□ 2.12
C4orf48-202ENST00000409860 PNPLA6Q8IY17 1366 aa28.27■■■□□ 2.12
C4orf48-202ENST00000409860 NME9Q86XW9 330 aa28.27■■■□□ 2.12
C4orf48-202ENST00000409860 ALS2Q96Q42 1657 aa28.26■■■□□ 2.11
C4orf48-202ENST00000409860 NLRP6P59044 892 aa28.25■■■□□ 2.11
C4orf48-202ENST00000409860 NUTM2GQ5VZR2 741 aa28.25■■■□□ 2.11
C4orf48-202ENST00000409860 NLRP13Q86W25 1043 aa28.25■■■□□ 2.11
C4orf48-202ENST00000409860 PER1O15534 1290 aaPredicted RBP28.24■■■□□ 2.11
C4orf48-202ENST00000409860 USP31Q70CQ4 1352 aa28.23■■■□□ 2.11
C4orf48-202ENST00000409860 FYB1O15117 783 aa28.22■■■□□ 2.11
C4orf48-202ENST00000409860 PIK3C2AO00443 1686 aa28.22■■■□□ 2.11
C4orf48-202ENST00000409860 NSD2O96028 1365 aa28.21■■■□□ 2.11
C4orf48-202ENST00000409860 COG3Q96JB2 828 aa28.2■■■□□ 2.1
C4orf48-202ENST00000409860 GGNBP2Q9H3C7 697 aa28.2■■■□□ 2.1
C4orf48-202ENST00000409860 PLEKHG5O94827 1062 aa28.19■■■□□ 2.1
C4orf48-202ENST00000409860 AMER1Q5JTC6 1135 aaPredicted RBP28.19■■■□□ 2.1
C4orf48-202ENST00000409860 ZRANB1Q9UGI0 708 aa28.19■■■□□ 2.1
C4orf48-202ENST00000409860 MED1Q15648 1581 aaPredicted RBP28.19■■■□□ 2.1
C4orf48-202ENST00000409860 SHPRHQ149N8 1683 aa28.19■■■□□ 2.1
C4orf48-202ENST00000409860 USP19O94966 1318 aa28.18■■■□□ 2.1
C4orf48-202ENST00000409860 COL22A1Q8NFW1 1626 aaPredicted RBP28.18■■■□□ 2.1
C4orf48-202ENST00000409860 OVOS2A0A0J9YW53 1432 aa28.18■■■□□ 2.1
C4orf48-202ENST00000409860 OVOS2Q6IE36 1432 aa28.18■■■□□ 2.1
C4orf48-202ENST00000409860 HAP1P54257 671 aaPredicted RBP28.17■■■□□ 2.1
C4orf48-202ENST00000409860 ILDR1Q86SU0 546 aaPredicted RBP28.17■■■□□ 2.1
C4orf48-202ENST00000409860 SPATA31A6Q5VVP1 1343 aa28.17■■■□□ 2.1
C4orf48-202ENST00000409860 NPC1L1Q9UHC9 1359 aa28.16■■■□□ 2.1
C4orf48-202ENST00000409860 KIF20BQ96Q89 1820 aa28.15■■■□□ 2.1
C4orf48-202ENST00000409860 CABLES1Q8TDN4 633 aa28.15■■■□□ 2.1
C4orf48-202ENST00000409860 KCNH5Q8NCM2 988 aa28.13■■■□□ 2.09
C4orf48-202ENST00000409860 USP54Q70EL1 1684 aa28.13■■■□□ 2.09
C4orf48-202ENST00000409860 CC2D1BQ5T0F9 858 aaKnown RBP28.12■■■□□ 2.09
C4orf48-202ENST00000409860 SLIT3O75094 1523 aa28.12■■■□□ 2.09
C4orf48-202ENST00000409860 NUTM2BA6NNL0 878 aaPredicted RBP28.11■■■□□ 2.09
C4orf48-202ENST00000409860 NUTM2EB1AL46 878 aaPredicted RBP28.11■■■□□ 2.09
C4orf48-202ENST00000409860 NUTM2AQ8IVF1 878 aaPredicted RBP28.11■■■□□ 2.09
C4orf48-202ENST00000409860 GCP02774 474 aa28.1■■■□□ 2.09
C4orf48-202ENST00000409860 MORC1Q86VD1 984 aa28.1■■■□□ 2.09
C4orf48-202ENST00000409860 SOX12O15370 315 aa28.09■■■□□ 2.09
C4orf48-202ENST00000409860 CNGB1Q14028 1251 aaPredicted RBP28.09■■■□□ 2.09
C4orf48-202ENST00000409860 PHRF1Q9P1Y6 1649 aaKnown RBP28.07■■■□□ 2.08
C4orf48-202ENST00000409860 MARF1Q9Y4F3 1742 aaKnown RBP28.06■■■□□ 2.08
C4orf48-202ENST00000409860 CRYBG1Q9Y4K1 1723 aa28.06■■■□□ 2.08
C4orf48-202ENST00000409860 ABCA3Q99758 1704 aa28.05■■■□□ 2.08
C4orf48-202ENST00000409860 ANKRD26Q9UPS8 1709 aa28.05■■■□□ 2.08
C4orf48-202ENST00000409860 ADAMTS2O95450 1211 aa28.03■■■□□ 2.08
C4orf48-202ENST00000409860 NFAT5O94916 1531 aa28.02■■■□□ 2.08
C4orf48-202ENST00000409860 TNNT2P45379 298 aaPredicted RBP28.02■■■□□ 2.08
C4orf48-202ENST00000409860 ZC3H6P61129 1189 aaKnown RBP28.02■■■□□ 2.08
C4orf48-202ENST00000409860 CPDO75976 1380 aa28.01■■■□□ 2.07
C4orf48-202ENST00000409860 LRP6O75581 1613 aa28.01■■■□□ 2.07
C4orf48-202ENST00000409860 AATKQ6ZMQ8 1374 aa28■■■□□ 2.07
C4orf48-202ENST00000409860 KIAA0232Q92628 1395 aa28■■■□□ 2.07
C4orf48-202ENST00000409860 MEX3CQ5U5Q3 659 aaKnown RBP28■■■□□ 2.07
C4orf48-202ENST00000409860 PRDM11Q9NQV5 511 aa28■■■□□ 2.07
C4orf48-202ENST00000409860 ZBTB7CA1YPR0 619 aa27.99■■■□□ 2.07
C4orf48-202ENST00000409860 ARHGEF25Q86VW2 580 aa27.98■■■□□ 2.07
C4orf48-202ENST00000409860 RALBP1Q15311 655 aa27.97■■■□□ 2.07
C4orf48-202ENST00000409860 PARD3Q8TEW0 1356 aa27.97■■■□□ 2.07
C4orf48-202ENST00000409860 FBLN1P23142 703 aa27.96■■■□□ 2.07
C4orf48-202ENST00000409860 RRS1Q15050 365 aaKnown RBP27.95■■■□□ 2.06
C4orf48-202ENST00000409860 MAP3K19Q56UN5 1328 aa27.94■■■□□ 2.06
C4orf48-202ENST00000409860 AMPHP49418 695 aa27.93■■■□□ 2.06
C4orf48-202ENST00000409860 CHRNA2Q15822 529 aa27.93■■■□□ 2.06
C4orf48-202ENST00000409860 C8orf37Q96NL8 207 aa27.93■■■□□ 2.06
C4orf48-202ENST00000409860 FAM83GA6ND36 823 aa27.92■■■□□ 2.06
C4orf48-202ENST00000409860 ANP32CO43423 234 aa27.92■■■□□ 2.06
C4orf48-202ENST00000409860 RTL1A6NKG5 1358 aa27.91■■■□□ 2.06
C4orf48-202ENST00000409860 PRKRIP1Q9H875 184 aaPredicted RBP27.91■■■□□ 2.06
C4orf48-202ENST00000409860 POLKQ9UBT6 870 aa27.91■■■□□ 2.06
C4orf48-202ENST00000409860 EMILIN1Q9Y6C2 1016 aa27.91■■■□□ 2.06
C4orf48-202ENST00000409860 KIF24Q5T7B8 1368 aa27.9■■■□□ 2.06
C4orf48-202ENST00000409860 NGLY1Q96IV0 654 aa27.9■■■□□ 2.06
C4orf48-202ENST00000409860 ABCC6O95255 1503 aa27.89■■■□□ 2.06
C4orf48-202ENST00000409860 PPM1GO15355 546 aaPredicted RBP27.89■■■□□ 2.06
C4orf48-202ENST00000409860 COL14A1Q05707 1796 aaKnown RBP27.88■■■□□ 2.05
C4orf48-202ENST00000409860 PPP2R1AP30153 589 aa27.88■■■□□ 2.05
C4orf48-202ENST00000409860 DIEXFQ68CQ4 756 aaKnown RBP27.88■■■□□ 2.05
C4orf48-202ENST00000409860 SMG6Q86US8 1419 aaKnown RBP27.88■■■□□ 2.05
C4orf48-202ENST00000409860 FLT4P35916 1363 aa27.87■■■□□ 2.05
C4orf48-202ENST00000409860 IP6K1Q92551 441 aa27.87■■■□□ 2.05
C4orf48-202ENST00000409860 HOXC9P31274 260 aa27.86■■■□□ 2.05
Retrieved 100 of 20,778 RNA–protein pairs in 6.7 ms