RNA–Protein interactions for RNA: ENST00000409543.6

TSPAN4-209, Transcript of tetraspanin 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene TSPAN4, Length 1,031 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN4-209ENST00000409543 ACEP12821 1306 aa28.05■■■□□ 2.08
TSPAN4-209ENST00000409543 TONSLQ96HA7 1378 aa28.04■■■□□ 2.08
TSPAN4-209ENST00000409543 UPF1Q92900 1129 aaKnown RBP eCLIP28.04■■■□□ 2.083e-9■■■■■ 35.5
TSPAN4-209ENST00000409543 GJD4Q96KN9 370 aaPredicted RBP28.03■■■□□ 2.08
TSPAN4-209ENST00000409543 CABP2Q9NPB3 220 aa28.03■■■□□ 2.08
TSPAN4-209ENST00000409543 FAM83GA6ND36 823 aa28■■■□□ 2.07
TSPAN4-209ENST00000409543 PPIP5K1Q6PFW1 1433 aa28■■■□□ 2.07
TSPAN4-209ENST00000409543 NWD2Q9ULI1 1742 aa27.98■■■□□ 2.07
TSPAN4-209ENST00000409543 EVC2Q86UK5 1308 aa27.98■■■□□ 2.07
TSPAN4-209ENST00000409543 PLCH1Q4KWH8 1693 aa27.98■■■□□ 2.07
TSPAN4-209ENST00000409543 CRYBG1Q9Y4K1 1723 aa27.97■■■□□ 2.07
TSPAN4-209ENST00000409543 RALGAPBQ86X10 1494 aa27.95■■■□□ 2.07
TSPAN4-209ENST00000409543 VPS72Q15906 364 aa27.95■■■□□ 2.06
TSPAN4-209ENST00000409543 CARD11Q9BXL7 1154 aa27.94■■■□□ 2.06
TSPAN4-209ENST00000409543 CABP1Q9NZU7 370 aa27.93■■■□□ 2.06
TSPAN4-209ENST00000409543 GLI3P10071 1580 aa27.93■■■□□ 2.06
TSPAN4-209ENST00000409543 COL14A1Q05707 1796 aaKnown RBP27.92■■■□□ 2.06
TSPAN4-209ENST00000409543 BRD4O60885 1362 aaPredicted RBP27.91■■■□□ 2.06
TSPAN4-209ENST00000409543 ATAD2Q6PL18 1390 aa27.91■■■□□ 2.06
TSPAN4-209ENST00000409543 ABTB2Q8N961 1025 aa27.9■■■□□ 2.06
TSPAN4-209ENST00000409543 BTG4Q9NY30 223 aa27.9■■■□□ 2.06
TSPAN4-209ENST00000409543 NUTM2GQ5VZR2 741 aa27.89■■■□□ 2.06
TSPAN4-209ENST00000409543 SBNO2Q9Y2G9 1366 aa27.88■■■□□ 2.05
TSPAN4-209ENST00000409543 CCDC9Q9Y3X0 531 aaKnown RBP27.88■■■□□ 2.05
TSPAN4-209ENST00000409543 PHRF1Q9P1Y6 1649 aaKnown RBP27.88■■■□□ 2.05
TSPAN4-209ENST00000409543 PRDM11Q9NQV5 511 aa27.87■■■□□ 2.05
TSPAN4-209ENST00000409543 NRAPQ86VF7 1730 aa27.87■■■□□ 2.05
TSPAN4-209ENST00000409543 USP6P35125 1406 aa27.86■■■□□ 2.05
TSPAN4-209ENST00000409543 KIAA0232Q92628 1395 aa27.86■■■□□ 2.05
TSPAN4-209ENST00000409543 ONECUT3O60422 494 aaPredicted RBP27.85■■■□□ 2.05
TSPAN4-209ENST00000409543 NLRP13Q86W25 1043 aa27.84■■■□□ 2.05
TSPAN4-209ENST00000409543 USP19O94966 1318 aa27.84■■■□□ 2.05
TSPAN4-209ENST00000409543 ZC3H6P61129 1189 aaKnown RBP27.82■■■□□ 2.04
TSPAN4-209ENST00000409543 SEPT12Q8IYM1 358 aa27.82■■■□□ 2.04
TSPAN4-209ENST00000409543 ZNF692Q9BU19 519 aaPredicted RBP27.82■■■□□ 2.04
TSPAN4-209ENST00000409543 SSH2Q76I76 1423 aa27.81■■■□□ 2.04
TSPAN4-209ENST00000409543 CHRNA2Q15822 529 aa27.8■■■□□ 2.04
TSPAN4-209ENST00000409543 NRKQ7Z2Y5 1582 aa27.79■■■□□ 2.04
TSPAN4-209ENST00000409543 CPDO75976 1380 aa27.77■■■□□ 2.04
TSPAN4-209ENST00000409543 SPATA31A5Q5VU36 1347 aa27.77■■■□□ 2.04
TSPAN4-209ENST00000409543 SPATA31A7Q8IWB4 1347 aa27.77■■■□□ 2.04
TSPAN4-209ENST00000409543 GCP02774 474 aa27.77■■■□□ 2.04
TSPAN4-209ENST00000409543 BRWD3Q6RI45 1802 aa27.76■■■□□ 2.04
TSPAN4-209ENST00000409543 NLRP6P59044 892 aa27.76■■■□□ 2.03
TSPAN4-209ENST00000409543 CPSF1Q10570 1443 aaKnown RBP27.75■■■□□ 2.03
TSPAN4-209ENST00000409543 CCDC125Q86Z20 511 aa27.75■■■□□ 2.03
TSPAN4-209ENST00000409543 AKAP12Q02952 1782 aa27.75■■■□□ 2.03
TSPAN4-209ENST00000409543 FAM98CQ17RN3 349 aaKnown RBP27.74■■■□□ 2.03
TSPAN4-209ENST00000409543 EP400Q96L91 3159 aa27.74■■■□□ 2.03
TSPAN4-209ENST00000409543 TTC21BQ7Z4L5 1316 aa27.73■■■□□ 2.03
TSPAN4-209ENST00000409543 CLSPNQ9HAW4 1339 aa27.72■■■□□ 2.03
TSPAN4-209ENST00000409543 PUS7Q96PZ0 661 aaKnown RBP27.72■■■□□ 2.03
TSPAN4-209ENST00000409543 PCGF6Q9BYE7 350 aa27.72■■■□□ 2.03
TSPAN4-209ENST00000409543 PIK3C2AO00443 1686 aa27.72■■■□□ 2.03
TSPAN4-209ENST00000409543 KRT27Q7Z3Y8 459 aa27.71■■■□□ 2.03
TSPAN4-209ENST00000409543 STRN4Q9NRL3 753 aa27.71■■■□□ 2.03
TSPAN4-209ENST00000409543 TIMELESSQ9UNS1 1208 aa27.71■■■□□ 2.03
TSPAN4-209ENST00000409543 KTN1Q86UP2 1357 aaKnown RBP27.71■■■□□ 2.03
TSPAN4-209ENST00000409543 SPATA31A1Q5TZJ5 1347 aa27.7■■■□□ 2.03
TSPAN4-209ENST00000409543 TTC21AQ8NDW8 1320 aa27.7■■■□□ 2.03
TSPAN4-209ENST00000409543 A0A0G2JS52 829 aa27.7■■■□□ 2.02
TSPAN4-209ENST00000409543 MYT1Q01538 1121 aa27.7■■■□□ 2.02
TSPAN4-209ENST00000409543 SLIT3O75094 1523 aa27.7■■■□□ 2.02
TSPAN4-209ENST00000409543 CAMTA1Q9Y6Y1 1673 aa27.69■■■□□ 2.02
TSPAN4-209ENST00000409543 ST20-MTHFSA0A0A6YYL1 179 aa27.69■■■□□ 2.02
TSPAN4-209ENST00000409543 EVA1CP58658 441 aa27.69■■■□□ 2.02
TSPAN4-209ENST00000409543 TESK2Q96S53 571 aa27.69■■■□□ 2.02
TSPAN4-209ENST00000409543 LMO7Q8WWI1 1683 aa27.68■■■□□ 2.02
TSPAN4-209ENST00000409543 SLC24A1O60721 1099 aa27.68■■■□□ 2.02
TSPAN4-209ENST00000409543 TMC1Q8TDI8 760 aa27.66■■■□□ 2.02
TSPAN4-209ENST00000409543 MON2Q7Z3U7 1717 aa27.66■■■□□ 2.02
TSPAN4-209ENST00000409543 CD163L1Q9NR16 1453 aa27.64■■■□□ 2.02
TSPAN4-209ENST00000409543 SLC12A5Q9H2X9 1139 aa27.64■■■□□ 2.02
TSPAN4-209ENST00000409543 BLMP54132 1417 aaPredicted RBP27.64■■■□□ 2.02
TSPAN4-209ENST00000409543 AATKQ6ZMQ8 1374 aa27.63■■■□□ 2.01
TSPAN4-209ENST00000409543 THSD7AQ9UPZ6 1657 aa27.63■■■□□ 2.01
TSPAN4-209ENST00000409543 HDGFL2Q7Z4V5 671 aaPredicted RBP27.63■■■□□ 2.01
TSPAN4-209ENST00000409543 KCNH5Q8NCM2 988 aa27.63■■■□□ 2.01
TSPAN4-209ENST00000409543 LARP1Q6PKG0 1096 aaKnown RBP27.62■■■□□ 2.01
TSPAN4-209ENST00000409543 TERF2IPQ9NYB0 399 aa27.61■■■□□ 2.01
TSPAN4-209ENST00000409543 COL5A2P05997 1499 aaPredicted RBP27.6■■■□□ 2.01
TSPAN4-209ENST00000409543 ZBTB7CA1YPR0 619 aa27.6■■■□□ 2.01
TSPAN4-209ENST00000409543 BARGINQ6ZT62 677 aa27.6■■■□□ 2.01
TSPAN4-209ENST00000409543 USP47Q96K76 1375 aa27.6■■■□□ 2.01
TSPAN4-209ENST00000409543 SUGP2Q8IX01 1082 aaKnown RBP eCLIP27.59■■■□□ 2.01
TSPAN4-209ENST00000409543 USP35Q9P2H5 1018 aa27.59■■■□□ 2.01
TSPAN4-209ENST00000409543 ARHGEF25Q86VW2 580 aa27.58■■■□□ 2.01
TSPAN4-209ENST00000409543 USP31Q70CQ4 1352 aa27.58■■■□□ 2.01
TSPAN4-209ENST00000409543 NINLQ9Y2I6 1382 aa27.58■■■□□ 2.01
TSPAN4-209ENST00000409543 TCP11L2Q8N4U5 519 aa27.57■■■□□ 2
TSPAN4-209ENST00000409543 COL18A1P39060 1754 aa27.56■■■□□ 2
TSPAN4-209ENST00000409543 SF3B2Q13435 895 aaKnown RBP27.56■■■□□ 2
TSPAN4-209ENST00000409543 THRAP3Q9Y2W1 955 aaKnown RBP27.56■■■□□ 2
TSPAN4-209ENST00000409543 A0A1W2PP64 1363 aa27.56■■■□□ 2
TSPAN4-209ENST00000409543 EDC4Q6P2E9 1401 aaKnown RBP27.56■■■□□ 2
TSPAN4-209ENST00000409543 NME9Q86XW9 330 aa27.54■■■□□ 2
TSPAN4-209ENST00000409543 ZRANB1Q9UGI0 708 aa27.54■■■□□ 2
TSPAN4-209ENST00000409543 USP54Q70EL1 1684 aa27.53■■■□□ 2
TSPAN4-209ENST00000409543 NFAT5O94916 1531 aa27.53■■■□□ 2
TSPAN4-209ENST00000409543 CRB1P82279 1406 aa27.53■■■□□ 2
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms