RNA–Protein interactions for RNA: ENST00000403971.2

HMGB3P19-201, Transcript of high mobility group box 3 pseudogene 19, humanhuman

BASIC

Gene HMGB3P19, Length 560 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P19-201ENST00000403971 PPEF1O14829 653 aaPredicted RBP9.74□□□□□ -0.85
HMGB3P19-201ENST00000403971 VAC14Q08AM6 782 aa9.74□□□□□ -0.85
HMGB3P19-201ENST00000403971 ARID3AQ99856 593 aa9.73□□□□□ -0.85
HMGB3P19-201ENST00000403971 FKBPLQ9UIM3 349 aa9.73□□□□□ -0.85
HMGB3P19-201ENST00000403971 FCF1Q9Y324 198 aaKnown RBP9.73□□□□□ -0.85
HMGB3P19-201ENST00000403971 WWC1Q8IX03 1113 aa9.72□□□□□ -0.85
HMGB3P19-201ENST00000403971 UNC93B1Q9H1C4 597 aa9.7□□□□□ -0.86
HMGB3P19-201ENST00000403971 RNF223E7ERA6 249 aa9.69□□□□□ -0.86
HMGB3P19-201ENST00000403971 CCDC82Q8N4S0 544 aa9.69□□□□□ -0.86
HMGB3P19-201ENST00000403971 PNMA1Q8ND90 353 aa9.69□□□□□ -0.86
HMGB3P19-201ENST00000403971 PLSCR2Q9NRY7 297 aa9.69□□□□□ -0.86
HMGB3P19-201ENST00000403971 FBXO45P0C2W1 286 aa9.68□□□□□ -0.86
HMGB3P19-201ENST00000403971 WASHC4Q2M389 1173 aa9.68□□□□□ -0.86
HMGB3P19-201ENST00000403971 ADAMTS19Q8TE59 1207 aa9.68□□□□□ -0.86
HMGB3P19-201ENST00000403971 PLA2G2CQ5R387 149 aa9.67□□□□□ -0.86
HMGB3P19-201ENST00000403971 PPP1R18Q6NYC8 613 aa9.67□□□□□ -0.86
HMGB3P19-201ENST00000403971 GLMNQ92990 594 aa9.67□□□□□ -0.86
HMGB3P19-201ENST00000403971 LINC01559Q495D7 138 aa9.66□□□□□ -0.86
HMGB3P19-201ENST00000403971 ZBBXA8MT70 800 aa9.65□□□□□ -0.86
HMGB3P19-201ENST00000403971 HDGFL1Q5TGJ6 251 aa9.65□□□□□ -0.86
HMGB3P19-201ENST00000403971 ARMC2Q8NEN0 867 aa9.65□□□□□ -0.86
HMGB3P19-201ENST00000403971 BAP1Q92560 729 aa9.65□□□□□ -0.86
HMGB3P19-201ENST00000403971 CALR3Q96L12 384 aaKnown RBP9.65□□□□□ -0.86
HMGB3P19-201ENST00000403971 OCSTAMPQ9BR26 566 aa9.65□□□□□ -0.86
HMGB3P19-201ENST00000403971 ZC3H4Q9UPT8 1303 aaKnown RBP9.64□□□□□ -0.87
HMGB3P19-201ENST00000403971 NR1H3Q13133 447 aa9.64□□□□□ -0.87
HMGB3P19-201ENST00000403971 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.64□□□□□ -0.87
HMGB3P19-201ENST00000403971 NBPF14Q5TI25 921 aa9.63□□□□□ -0.87
HMGB3P19-201ENST00000403971 PDXDC2PQ6P474 469 aa9.63□□□□□ -0.87
HMGB3P19-201ENST00000403971 GGCXP38435 758 aa9.62□□□□□ -0.87
HMGB3P19-201ENST00000403971 ANKLE1Q8NAG6 615 aa9.62□□□□□ -0.87
HMGB3P19-201ENST00000403971 ALG2Q9H553 416 aa9.62□□□□□ -0.87
HMGB3P19-201ENST00000403971 PTK2Q05397 1052 aa9.61□□□□□ -0.87
HMGB3P19-201ENST00000403971 GPKOWQ92917 476 aaPredicted RBP eCLIP9.61□□□□□ -0.87
HMGB3P19-201ENST00000403971 FOXJ1Q92949 421 aa9.61□□□□□ -0.87
HMGB3P19-201ENST00000403971 SH3BP5LQ7L8J4 393 aa9.6□□□□□ -0.87
HMGB3P19-201ENST00000403971 ZNF511Q8NB15 262 aa9.6□□□□□ -0.87
HMGB3P19-201ENST00000403971 CCDC97Q96F63 343 aaPredicted RBP9.6□□□□□ -0.87
HMGB3P19-201ENST00000403971 ARHGAP9Q9BRR9 750 aa9.6□□□□□ -0.87
HMGB3P19-201ENST00000403971 CARD14Q9BXL6 1004 aa9.6□□□□□ -0.87
HMGB3P19-201ENST00000403971 MAGEB6P1A0A0J9YX57 407 aa9.59□□□□□ -0.87
HMGB3P19-201ENST00000403971 C4orf48Q5BLP8 95 aa9.59□□□□□ -0.87
HMGB3P19-201ENST00000403971 ZBTB24O43167 697 aaPredicted RBP9.58□□□□□ -0.88
HMGB3P19-201ENST00000403971 SH3BP2P78314 561 aa9.58□□□□□ -0.88
HMGB3P19-201ENST00000403971 EIF4G2P78344 907 aaKnown RBP eCLIP9.58□□□□□ -0.88
HMGB3P19-201ENST00000403971 TRIM32Q13049 653 aa9.58□□□□□ -0.88
HMGB3P19-201ENST00000403971 SEMA3FQ13275 785 aa9.58□□□□□ -0.88
HMGB3P19-201ENST00000403971 ADAM32Q8TC27 787 aa9.58□□□□□ -0.88
HMGB3P19-201ENST00000403971 EMID1Q96A84 441 aaPredicted RBP9.58□□□□□ -0.88
HMGB3P19-201ENST00000403971 SERPINA10Q9UK55 444 aa9.58□□□□□ -0.88
HMGB3P19-201ENST00000403971 GPSM3Q9Y4H4 160 aa9.58□□□□□ -0.88
HMGB3P19-201ENST00000403971 SKOR1P84550 965 aa9.57□□□□□ -0.88
HMGB3P19-201ENST00000403971 AGERQ15109 404 aa9.57□□□□□ -0.88
HMGB3P19-201ENST00000403971 SH3RF1Q7Z6J0 888 aa9.57□□□□□ -0.88
HMGB3P19-201ENST00000403971 SOX11P35716 441 aa9.56□□□□□ -0.88
HMGB3P19-201ENST00000403971 LIAT1Q6ZQX7 453 aa9.56□□□□□ -0.88
HMGB3P19-201ENST00000403971 ZBTB33Q86T24 672 aa9.56□□□□□ -0.88
HMGB3P19-201ENST00000403971 UCN2Q96RP3 112 aa9.56□□□□□ -0.88
HMGB3P19-201ENST00000403971 PLA2G2EQ9NZK7 142 aa9.56□□□□□ -0.88
HMGB3P19-201ENST00000403971 PCDHB9Q9Y5E1 797 aa9.56□□□□□ -0.88
HMGB3P19-201ENST00000403971 IFFO2Q5TF58 517 aa9.55□□□□□ -0.88
HMGB3P19-201ENST00000403971 BPHLQ86WA6 291 aaPredicted RBP9.54□□□□□ -0.88
HMGB3P19-201ENST00000403971 PIK3CDO00329 1044 aa9.53□□□□□ -0.88
HMGB3P19-201ENST00000403971 ERFEQ4G0M1 354 aa9.53□□□□□ -0.88
HMGB3P19-201ENST00000403971 RPIAP49247 311 aa9.52□□□□□ -0.89
HMGB3P19-201ENST00000403971 TBC1D9Q6ZT07 1266 aa9.51□□□□□ -0.89
HMGB3P19-201ENST00000403971 DZIP3Q86Y13 1208 aaKnown RBP9.51□□□□□ -0.89
HMGB3P19-201ENST00000403971 PPP1R12CQ9BZL4 782 aa9.51□□□□□ -0.89
HMGB3P19-201ENST00000403971 CEP126Q9P2H0 1117 aa9.51□□□□□ -0.89
HMGB3P19-201ENST00000403971 A0A0G2JS52 829 aa9.5□□□□□ -0.89
HMGB3P19-201ENST00000403971 PALM3A6NDB9 673 aaPredicted RBP9.5□□□□□ -0.89
HMGB3P19-201ENST00000403971 RFX1P22670 979 aa9.5□□□□□ -0.89
HMGB3P19-201ENST00000403971 WNT7BP56706 349 aa9.5□□□□□ -0.89
HMGB3P19-201ENST00000403971 CFAP70Q5T0N1 1121 aa9.5□□□□□ -0.89
HMGB3P19-201ENST00000403971 FAM174AQ8TBP5 190 aa9.5□□□□□ -0.89
HMGB3P19-201ENST00000403971 C1QTNF2Q9BXJ5 285 aa9.5□□□□□ -0.89
HMGB3P19-201ENST00000403971 TFIP11Q9UBB9 837 aaKnown RBP9.5□□□□□ -0.89
HMGB3P19-201ENST00000403971 CD2BP2O95400 341 aaKnown RBP9.49□□□□□ -0.89
HMGB3P19-201ENST00000403971 SLC19A1P41440 591 aa9.49□□□□□ -0.89
HMGB3P19-201ENST00000403971 RC3H1Q5TC82 1133 aaKnown RBP9.48□□□□□ -0.89
HMGB3P19-201ENST00000403971 LMOD1P29536 600 aaPredicted RBP9.47□□□□□ -0.89
HMGB3P19-201ENST00000403971 EHBP1Q8NDI1 1231 aa9.47□□□□□ -0.89
HMGB3P19-201ENST00000403971 SLC10A4Q96EP9 437 aa9.47□□□□□ -0.89
HMGB3P19-201ENST00000403971 ARXQ96QS3 562 aa9.47□□□□□ -0.89
HMGB3P19-201ENST00000403971 GIGYF1O75420 1035 aaPredicted RBP9.46□□□□□ -0.9
HMGB3P19-201ENST00000403971 SLFNL1Q499Z3 407 aa9.46□□□□□ -0.9
HMGB3P19-201ENST00000403971 PHTF2Q8N3S3 785 aa9.46□□□□□ -0.9
HMGB3P19-201ENST00000403971 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP9.45□□□□□ -0.9
HMGB3P19-201ENST00000403971 ATP9BO43861 1147 aa9.45□□□□□ -0.9
HMGB3P19-201ENST00000403971 SKIP12755 728 aa9.45□□□□□ -0.9
HMGB3P19-201ENST00000403971 VARSP26640 1264 aaKnown RBP9.45□□□□□ -0.9
HMGB3P19-201ENST00000403971 MCCD1P59942 119 aaPredicted RBP9.45□□□□□ -0.9
HMGB3P19-201ENST00000403971 TSGA10IPQ3SY00 556 aa9.45□□□□□ -0.9
HMGB3P19-201ENST00000403971 SPRYD7Q5W111 196 aa9.45□□□□□ -0.9
HMGB3P19-201ENST00000403971 RNF135Q8IUD6 432 aa9.45□□□□□ -0.9
HMGB3P19-201ENST00000403971 TRMT44Q8IYL2 757 aaKnown RBP9.45□□□□□ -0.9
HMGB3P19-201ENST00000403971 MAFBQ9Y5Q3 323 aaPredicted RBP9.45□□□□□ -0.9
HMGB3P19-201ENST00000403971 HOMEZQ8IX15 550 aa9.44□□□□□ -0.9
HMGB3P19-201ENST00000403971 DEPDC4Q8N2C3 294 aa9.44□□□□□ -0.9
HMGB3P19-201ENST00000403971 PRKD2Q9BZL6 878 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms