RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 NGDNQ8NEJ9 315 aaKnown RBP19.35■□□□□ 0.69
SKA1-202ENST00000398452 DCCP43146 1447 aa19.34■□□□□ 0.69
SKA1-202ENST00000398452 MYOM1P52179 1685 aa19.34■□□□□ 0.69
SKA1-202ENST00000398452 PRR36Q9H6K5 1346 aa19.34■□□□□ 0.69
SKA1-202ENST00000398452 MEX3CQ5U5Q3 659 aaKnown RBP19.34■□□□□ 0.69
SKA1-202ENST00000398452 KTN1Q86UP2 1357 aaKnown RBP19.33■□□□□ 0.69
SKA1-202ENST00000398452 PLEKHG3A1L390 1219 aa19.33■□□□□ 0.68
SKA1-202ENST00000398452 ESCO1Q5FWF5 840 aa19.33■□□□□ 0.68
SKA1-202ENST00000398452 CGNL1Q0VF96 1302 aa19.32■□□□□ 0.68
SKA1-202ENST00000398452 FMN2Q9NZ56 1722 aa19.32■□□□□ 0.68
SKA1-202ENST00000398452 NUTM2BA6NNL0 878 aaPredicted RBP19.32■□□□□ 0.68
SKA1-202ENST00000398452 NUTM2EB1AL46 878 aaPredicted RBP19.32■□□□□ 0.68
SKA1-202ENST00000398452 NUTM2AQ8IVF1 878 aaPredicted RBP19.32■□□□□ 0.68
SKA1-202ENST00000398452 RBM42Q9BTD8 480 aaKnown RBP19.32■□□□□ 0.68
SKA1-202ENST00000398452 NSD3Q9BZ95 1437 aa19.32■□□□□ 0.68
SKA1-202ENST00000398452 A0A1W2PP64 1363 aa19.32■□□□□ 0.68
SKA1-202ENST00000398452 ITSN1Q15811 1721 aa19.31■□□□□ 0.68
SKA1-202ENST00000398452 POTEHQ6S545 545 aa19.31■□□□□ 0.68
SKA1-202ENST00000398452 PMFBP1Q8TBY8 1022 aa19.31■□□□□ 0.68
SKA1-202ENST00000398452 DDX17Q92841 729 aaKnown RBP19.31■□□□□ 0.68
SKA1-202ENST00000398452 PHF8Q9UPP1 1060 aa19.31■□□□□ 0.68
SKA1-202ENST00000398452 COL16A1Q07092 1604 aaPredicted RBP19.3■□□□□ 0.68
SKA1-202ENST00000398452 PER1O15534 1290 aaPredicted RBP19.3■□□□□ 0.68
SKA1-202ENST00000398452 RALBP1Q15311 655 aa19.3■□□□□ 0.68
SKA1-202ENST00000398452 CC2D1BQ5T0F9 858 aaKnown RBP19.3■□□□□ 0.68
SKA1-202ENST00000398452 ACEP12821 1306 aa19.29■□□□□ 0.68
SKA1-202ENST00000398452 MIER1Q8N108 512 aa19.29■□□□□ 0.68
SKA1-202ENST00000398452 ATF5Q9Y2D1 282 aaPredicted RBP19.29■□□□□ 0.68
SKA1-202ENST00000398452 CARD14Q9BXL6 1004 aa19.27■□□□□ 0.68
SKA1-202ENST00000398452 PRKRIP1Q9H875 184 aaPredicted RBP19.27■□□□□ 0.68
SKA1-202ENST00000398452 MST1RQ04912 1400 aa19.26■□□□□ 0.67
SKA1-202ENST00000398452 NSD2O96028 1365 aa19.26■□□□□ 0.67
SKA1-202ENST00000398452 NPC1L1Q9UHC9 1359 aa19.26■□□□□ 0.67
SKA1-202ENST00000398452 AHDC1Q5TGY3 1603 aaPredicted RBP19.25■□□□□ 0.67
SKA1-202ENST00000398452 C1orf167Q5SNV9 1468 aa19.25■□□□□ 0.67
SKA1-202ENST00000398452 PSME1Q06323 249 aa19.25■□□□□ 0.67
SKA1-202ENST00000398452 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.25■□□□□ 0.67
SKA1-202ENST00000398452 LRP6O75581 1613 aa19.25■□□□□ 0.67
SKA1-202ENST00000398452 CPSF1Q10570 1443 aaKnown RBP19.25■□□□□ 0.67
SKA1-202ENST00000398452 EDC4Q6P2E9 1401 aaKnown RBP19.25■□□□□ 0.67
SKA1-202ENST00000398452 SPATA31A6Q5VVP1 1343 aa19.25■□□□□ 0.67
SKA1-202ENST00000398452 TOPAZ1Q8N9V7 1692 aa19.24■□□□□ 0.67
SKA1-202ENST00000398452 ZBTB22O15209 634 aa19.24■□□□□ 0.67
SKA1-202ENST00000398452 USP32Q8NFA0 1604 aa19.24■□□□□ 0.67
SKA1-202ENST00000398452 CD163L1Q9NR16 1453 aa19.23■□□□□ 0.67
SKA1-202ENST00000398452 POLR3AO14802 1390 aaPredicted RBP19.23■□□□□ 0.67
SKA1-202ENST00000398452 AMER1Q5JTC6 1135 aaPredicted RBP19.23■□□□□ 0.67
SKA1-202ENST00000398452 MORC1Q86VD1 984 aa19.23■□□□□ 0.67
SKA1-202ENST00000398452 ORAI2Q96SN7 254 aa19.22■□□□□ 0.67
SKA1-202ENST00000398452 BRD4O60885 1362 aaPredicted RBP19.21■□□□□ 0.67
SKA1-202ENST00000398452 CCER2I3L3R5 266 aa19.21■□□□□ 0.67
SKA1-202ENST00000398452 PAK3O75914 559 aaPredicted RBP19.21■□□□□ 0.67
SKA1-202ENST00000398452 USP6P35125 1406 aa19.21■□□□□ 0.67
SKA1-202ENST00000398452 TTC21AQ8NDW8 1320 aa19.21■□□□□ 0.67
SKA1-202ENST00000398452 MYBBP1AQ9BQG0 1328 aaKnown RBP19.21■□□□□ 0.67
SKA1-202ENST00000398452 LRRC59Q96AG4 307 aaKnown RBP19.2■□□□□ 0.66
SKA1-202ENST00000398452 TTC21BQ7Z4L5 1316 aa19.2■□□□□ 0.66
SKA1-202ENST00000398452 COG3Q96JB2 828 aa19.19■□□□□ 0.66
SKA1-202ENST00000398452 RGPD8O14715 1765 aaPredicted RBP19.19■□□□□ 0.66
SKA1-202ENST00000398452 KIF1AQ12756 1690 aa19.18■□□□□ 0.66
SKA1-202ENST00000398452 FOXO3O43524 673 aa19.18■□□□□ 0.66
SKA1-202ENST00000398452 GGNBP2Q9H3C7 697 aa19.18■□□□□ 0.66
SKA1-202ENST00000398452 NPHP3Q7Z494 1330 aa19.18■□□□□ 0.66
SKA1-202ENST00000398452 PARD3Q8TEW0 1356 aa19.18■□□□□ 0.66
SKA1-202ENST00000398452 SHPRHQ149N8 1683 aa19.17■□□□□ 0.66
SKA1-202ENST00000398452 AKAP12Q02952 1782 aa19.17■□□□□ 0.66
SKA1-202ENST00000398452 FYB1O15117 783 aa19.17■□□□□ 0.66
SKA1-202ENST00000398452 ZNF772Q68DY9 489 aaPredicted RBP19.17■□□□□ 0.66
SKA1-202ENST00000398452 KRT28Q7Z3Y7 464 aa19.16■□□□□ 0.66
SKA1-202ENST00000398452 MON2Q7Z3U7 1717 aa19.16■□□□□ 0.66
SKA1-202ENST00000398452 ADAMTS2O95450 1211 aa19.15■□□□□ 0.66
SKA1-202ENST00000398452 NLRP13Q86W25 1043 aa19.15■□□□□ 0.66
SKA1-202ENST00000398452 C8orf37Q96NL8 207 aa19.15■□□□□ 0.66
SKA1-202ENST00000398452 NHSL1Q5SYE7 1610 aa19.14■□□□□ 0.66
SKA1-202ENST00000398452 NME9Q86XW9 330 aa19.14■□□□□ 0.65
SKA1-202ENST00000398452 ABTB2Q8N961 1025 aa19.14■□□□□ 0.65
SKA1-202ENST00000398452 AFF2P51816 1311 aa19.14■□□□□ 0.65
SKA1-202ENST00000398452 TNNT2P45379 298 aaPredicted RBP19.13■□□□□ 0.65
SKA1-202ENST00000398452 LMOD2Q6P5Q4 547 aa19.13■□□□□ 0.65
SKA1-202ENST00000398452 MRS2Q9HD23 443 aa19.13■□□□□ 0.65
SKA1-202ENST00000398452 ZBTB12Q9Y330 459 aaPredicted RBP19.13■□□□□ 0.65
SKA1-202ENST00000398452 PNPLA6Q8IY17 1366 aa19.12■□□□□ 0.65
SKA1-202ENST00000398452 XPCQ01831 940 aaPredicted RBP19.12■□□□□ 0.65
SKA1-202ENST00000398452 RXRBP28702 533 aa19.11■□□□□ 0.65
SKA1-202ENST00000398452 PPP2R1AP30153 589 aa19.11■□□□□ 0.65
SKA1-202ENST00000398452 NLRP6P59044 892 aa19.11■□□□□ 0.65
SKA1-202ENST00000398452 KIF20BQ96Q89 1820 aa19.11■□□□□ 0.65
SKA1-202ENST00000398452 ATXN8OSP0DMR3 200 aa19.1■□□□□ 0.65
SKA1-202ENST00000398452 CFAP53Q96M91 514 aa19.1■□□□□ 0.65
SKA1-202ENST00000398452 NGLY1Q96IV0 654 aa19.09■□□□□ 0.65
SKA1-202ENST00000398452 SSH2Q76I76 1423 aa19.08■□□□□ 0.65
SKA1-202ENST00000398452 NRKQ7Z2Y5 1582 aa19.07■□□□□ 0.64
SKA1-202ENST00000398452 SOS2Q07890 1332 aaPredicted RBP19.07■□□□□ 0.64
SKA1-202ENST00000398452 SBNO1A3KN83 1393 aa19.06■□□□□ 0.64
SKA1-202ENST00000398452 QTRT2Q9H974 415 aaKnown RBP19.06■□□□□ 0.64
SKA1-202ENST00000398452 USP31Q70CQ4 1352 aa19.06■□□□□ 0.64
SKA1-202ENST00000398452 NUTM2GQ5VZR2 741 aa19.05■□□□□ 0.64
SKA1-202ENST00000398452 ZRANB1Q9UGI0 708 aa19.05■□□□□ 0.64
SKA1-202ENST00000398452 ANKRD26Q9UPS8 1709 aa19.05■□□□□ 0.64
SKA1-202ENST00000398452 PLEKHG5O94827 1062 aa19.04■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 105.5 ms