RNA–Protein interactions for RNA: ENST00000396352.8

HOXA3-202, Transcript of homeobox A3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXA3, Length 3,263 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3-202ENST00000396352 EXOSC9Q06265 439 aaKnown RBP20.01■□□□□ 0.79
HOXA3-202ENST00000396352 FTSJ3Q8IY81 847 aaKnown RBP20.01■□□□□ 0.79
HOXA3-202ENST00000396352 GGNBP2Q9H3C7 697 aa20.01■□□□□ 0.79
HOXA3-202ENST00000396352 PREX1Q8TCU6 1659 aa20.01■□□□□ 0.79
HOXA3-202ENST00000396352 TRIM27P14373 513 aa20.01■□□□□ 0.79
HOXA3-202ENST00000396352 UPF2Q9HAU5 1272 aaKnown RBP20.01■□□□□ 0.79
HOXA3-202ENST00000396352 SMC4Q9NTJ3 1288 aa20■□□□□ 0.79
HOXA3-202ENST00000396352 U2SURPO15042 1029 aaKnown RBP20■□□□□ 0.79
HOXA3-202ENST00000396352 KIF20BQ96Q89 1820 aa19.99■□□□□ 0.79
HOXA3-202ENST00000396352 SRPK2P78362 688 aaKnown RBP19.99■□□□□ 0.79
HOXA3-202ENST00000396352 SSH1Q8WYL5 1049 aa19.99■□□□□ 0.79
HOXA3-202ENST00000396352 SLKQ9H2G2 1235 aaPredicted RBP19.99■□□□□ 0.79
HOXA3-202ENST00000396352 STK26Q9P289 416 aa19.99■□□□□ 0.79
HOXA3-202ENST00000396352 ATAD2Q6PL18 1390 aa19.98■□□□□ 0.79
HOXA3-202ENST00000396352 FYB1O15117 783 aa19.98■□□□□ 0.79
HOXA3-202ENST00000396352 TBC1D2Q9BYX2 928 aa19.98■□□□□ 0.79
HOXA3-202ENST00000396352 IL16Q14005 1332 aa19.98■□□□□ 0.79
HOXA3-202ENST00000396352 HDAC1Q13547 482 aaPredicted RBP19.98■□□□□ 0.79
HOXA3-202ENST00000396352 ATF7IPQ6VMQ6 1270 aa19.96■□□□□ 0.79
HOXA3-202ENST00000396352 SLC52A1Q9NWF4 448 aa19.96■□□□□ 0.79
HOXA3-202ENST00000396352 PNPLA6Q8IY17 1366 aa19.96■□□□□ 0.79
HOXA3-202ENST00000396352 CDC42BPGQ6DT37 1551 aa19.96■□□□□ 0.79
HOXA3-202ENST00000396352 YTHDC2Q9H6S0 1430 aaKnown RBP19.95■□□□□ 0.78
HOXA3-202ENST00000396352 DDX19BQ9UMR2 479 aa19.95■□□□□ 0.78
HOXA3-202ENST00000396352 POGKQ9P215 609 aa19.94■□□□□ 0.78
HOXA3-202ENST00000396352 MINK1Q8N4C8 1332 aaPredicted RBP19.94■□□□□ 0.78
HOXA3-202ENST00000396352 SENP3Q9H4L4 574 aaPredicted RBP19.94■□□□□ 0.78
HOXA3-202ENST00000396352 TERF2IPQ9NYB0 399 aa19.94■□□□□ 0.78
HOXA3-202ENST00000396352 ITPRIPQ8IWB1 547 aa19.94■□□□□ 0.78
HOXA3-202ENST00000396352 PRAM1Q96QH2 718 aa19.94■□□□□ 0.78
HOXA3-202ENST00000396352 NOB1Q9ULX3 412 aaKnown RBP19.94■□□□□ 0.78
HOXA3-202ENST00000396352 LRRC7Q96NW7 1537 aa19.94■□□□□ 0.78
HOXA3-202ENST00000396352 YEATS2Q9ULM3 1422 aa19.93■□□□□ 0.78
HOXA3-202ENST00000396352 ARHGEF40Q8TER5 1519 aa19.92■□□□□ 0.78
HOXA3-202ENST00000396352 RIPK4P57078 832 aa19.92■□□□□ 0.78
HOXA3-202ENST00000396352 ALKQ9UM73 1620 aa19.92■□□□□ 0.78
HOXA3-202ENST00000396352 SMC5Q8IY18 1101 aa19.91■□□□□ 0.78
HOXA3-202ENST00000396352 TMEM57Q8N5G2 664 aa19.91■□□□□ 0.78
HOXA3-202ENST00000396352 ZBTB40Q9NUA8 1239 aa19.91■□□□□ 0.78
HOXA3-202ENST00000396352 DIAPH1O60610 1272 aaKnown RBP19.9■□□□□ 0.78
HOXA3-202ENST00000396352 ANO8Q9HCE9 1232 aaPredicted RBP19.89■□□□□ 0.77
HOXA3-202ENST00000396352 C22orf23Q9BZE7 217 aa19.89■□□□□ 0.77
HOXA3-202ENST00000396352 KIF16BQ96L93 1317 aa19.88■□□□□ 0.77
HOXA3-202ENST00000396352 FAM135BQ49AJ0 1406 aa19.88■□□□□ 0.77
HOXA3-202ENST00000396352 MFAP1P55081 439 aaKnown RBP19.87■□□□□ 0.77
HOXA3-202ENST00000396352 HDGFL2Q7Z4V5 671 aaPredicted RBP19.86■□□□□ 0.77
HOXA3-202ENST00000396352 CDK19Q9BWU1 502 aa19.86■□□□□ 0.77
HOXA3-202ENST00000396352 ALDH1L2Q3SY69 923 aa19.86■□□□□ 0.77
HOXA3-202ENST00000396352 PPIP5K1Q6PFW1 1433 aa19.86■□□□□ 0.77
HOXA3-202ENST00000396352 OSCARQ8IYS5 282 aa19.86■□□□□ 0.77
HOXA3-202ENST00000396352 PNNQ9H307 717 aaKnown RBP19.85■□□□□ 0.77
HOXA3-202ENST00000396352 FCHSD2O94868 740 aa19.85■□□□□ 0.77
HOXA3-202ENST00000396352 CABP1Q9NZU7 370 aa19.85■□□□□ 0.77
HOXA3-202ENST00000396352 MAP2P11137 1827 aaKnown RBP19.85■□□□□ 0.77
HOXA3-202ENST00000396352 RSPH6AQ9H0K4 717 aa19.84■□□□□ 0.77
HOXA3-202ENST00000396352 IPO8O15397 1037 aaKnown RBP19.84■□□□□ 0.77
HOXA3-202ENST00000396352 NUCB1Q02818 461 aa19.84■□□□□ 0.77
HOXA3-202ENST00000396352 SETD1AO15047 1707 aaKnown RBP19.83■□□□□ 0.77
HOXA3-202ENST00000396352 SPRYD3Q8NCJ5 442 aa19.82■□□□□ 0.76
HOXA3-202ENST00000396352 ATP7BP35670 1465 aa19.82■□□□□ 0.76
HOXA3-202ENST00000396352 BRPF1P55201 1214 aaPredicted RBP19.82■□□□□ 0.76
HOXA3-202ENST00000396352 FBXO31Q5XUX0 539 aaPredicted RBP19.82■□□□□ 0.76
HOXA3-202ENST00000396352 DLC1Q96QB1 1528 aa19.82■□□□□ 0.76
HOXA3-202ENST00000396352 RIMBP3CA6NJZ7 1639 aa19.82■□□□□ 0.76
HOXA3-202ENST00000396352 RIMBP3BA6NNM3 1639 aa19.82■□□□□ 0.76
HOXA3-202ENST00000396352 RIMBP3Q9UFD9 1639 aa19.82■□□□□ 0.76
HOXA3-202ENST00000396352 PRKAR2BP31323 418 aa19.81■□□□□ 0.76
HOXA3-202ENST00000396352 POLKQ9UBT6 870 aa19.81■□□□□ 0.76
HOXA3-202ENST00000396352 FBLN1P23142 703 aa19.8■□□□□ 0.76
HOXA3-202ENST00000396352 NCOA3Q9Y6Q9 1424 aa19.79■□□□□ 0.76
HOXA3-202ENST00000396352 MCM4P33991 863 aa19.78■□□□□ 0.76
HOXA3-202ENST00000396352 ZNF428Q96B54 188 aa19.78■□□□□ 0.76
HOXA3-202ENST00000396352 PIK3R4Q99570 1358 aa19.78■□□□□ 0.76
HOXA3-202ENST00000396352 PTCH1Q13635 1447 aa19.78■□□□□ 0.76
HOXA3-202ENST00000396352 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.78■□□□□ 0.76
HOXA3-202ENST00000396352 PHACTR3Q96KR7 559 aa19.78■□□□□ 0.76
HOXA3-202ENST00000396352 CHMP5Q9NZZ3 219 aa19.78■□□□□ 0.76
HOXA3-202ENST00000396352 RBM25P49756 843 aaKnown RBP19.77■□□□□ 0.76
HOXA3-202ENST00000396352 CHD1LQ86WJ1 897 aa19.77■□□□□ 0.76
HOXA3-202ENST00000396352 LNPKQ9C0E8 428 aa19.77■□□□□ 0.76
HOXA3-202ENST00000396352 DLG5Q8TDM6 1919 aa19.77■□□□□ 0.76
HOXA3-202ENST00000396352 FAM43AQ8N2R8 423 aa19.77■□□□□ 0.76
HOXA3-202ENST00000396352 ZNF692Q9BU19 519 aaPredicted RBP19.77■□□□□ 0.76
HOXA3-202ENST00000396352 NFE2L2Q16236 605 aa19.76■□□□□ 0.75
HOXA3-202ENST00000396352 ZBTB7BO15156 539 aaPredicted RBP19.76■□□□□ 0.75
HOXA3-202ENST00000396352 VAMP4O75379 141 aa19.75■□□□□ 0.75
HOXA3-202ENST00000396352 MRPL50Q8N5N7 158 aaKnown RBP19.75■□□□□ 0.75
HOXA3-202ENST00000396352 L1TD1Q5T7N2 865 aaKnown RBP19.75■□□□□ 0.75
HOXA3-202ENST00000396352 THUMPD2Q9BTF0 503 aaKnown RBP19.75■□□□□ 0.75
HOXA3-202ENST00000396352 DDIT3P35638 169 aa19.74■□□□□ 0.75
HOXA3-202ENST00000396352 WAPLQ7Z5K2 1190 aa19.74■□□□□ 0.75
HOXA3-202ENST00000396352 HMOX1P09601 288 aa19.74■□□□□ 0.75
HOXA3-202ENST00000396352 HSCBQ8IWL3 235 aa19.74■□□□□ 0.75
HOXA3-202ENST00000396352 CDK12Q9NYV4 1490 aaPredicted RBP19.74■□□□□ 0.75
HOXA3-202ENST00000396352 CPSF1Q10570 1443 aaKnown RBP19.74■□□□□ 0.75
HOXA3-202ENST00000396352 TSPYL6Q8N831 410 aa19.73■□□□□ 0.75
HOXA3-202ENST00000396352 ARHGAP45Q92619 1136 aa19.73■□□□□ 0.75
HOXA3-202ENST00000396352 A2ML1A8K2U0 1454 aa19.73■□□□□ 0.75
HOXA3-202ENST00000396352 BMP2KLQ5H9B9 411 aa19.73■□□□□ 0.75
HOXA3-202ENST00000396352 FSD2A1L4K1 749 aa19.72■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms