RNA–Protein interactions for RNA: ENST00000395860.6

VCPKMT-202, Transcript of valosin containing protein lysine methyltransferase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VCPKMT, Length 1,761 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCPKMT-202ENST00000395860 CADPS2Q86UW7 1296 aa27.56■■■□□ 2
VCPKMT-202ENST00000395860 C1orf167Q5SNV9 1468 aa27.56■■■□□ 2
VCPKMT-202ENST00000395860 AEBP2Q6ZN18 517 aaPredicted RBP27.55■■■□□ 2
VCPKMT-202ENST00000395860 KIF1AQ12756 1690 aa27.55■■■□□ 2
VCPKMT-202ENST00000395860 MST1RQ04912 1400 aa27.55■■■□□ 2
VCPKMT-202ENST00000395860 TTC21BQ7Z4L5 1316 aa27.54■■■□□ 2
VCPKMT-202ENST00000395860 TNNT2P45379 298 aaPredicted RBP27.54■■■□□ 2
VCPKMT-202ENST00000395860 NME9Q86XW9 330 aa27.53■■■□□ 2
VCPKMT-202ENST00000395860 SSH2Q76I76 1423 aa27.53■■■□□ 2
VCPKMT-202ENST00000395860 ORAI2Q96SN7 254 aa27.52■■■□□ 2
VCPKMT-202ENST00000395860 FAM9BQ8IZU0 186 aa27.51■■□□□ 1.99
VCPKMT-202ENST00000395860 TTC21AQ8NDW8 1320 aa27.5■■□□□ 1.99
VCPKMT-202ENST00000395860 COG3Q96JB2 828 aa27.48■■□□□ 1.99
VCPKMT-202ENST00000395860 PNISRQ8TF01 805 aaKnown RBP27.47■■□□□ 1.99
VCPKMT-202ENST00000395860 ZRANB1Q9UGI0 708 aa27.46■■□□□ 1.99
VCPKMT-202ENST00000395860 PSME1Q06323 249 aa27.45■■□□□ 1.99
VCPKMT-202ENST00000395860 PIK3C2AO00443 1686 aa27.45■■□□□ 1.99
VCPKMT-202ENST00000395860 LTBP4Q8N2S1 1624 aa27.45■■□□□ 1.98
VCPKMT-202ENST00000395860 MAP2P11137 1827 aaKnown RBP27.44■■□□□ 1.98
VCPKMT-202ENST00000395860 SCAF1Q9H7N4 1312 aaKnown RBP27.43■■□□□ 1.98
VCPKMT-202ENST00000395860 FOXO3O43524 673 aa27.43■■□□□ 1.98
VCPKMT-202ENST00000395860 PAK3O75914 559 aaPredicted RBP27.42■■□□□ 1.98
VCPKMT-202ENST00000395860 MTHFSP49914 203 aa27.42■■□□□ 1.98
VCPKMT-202ENST00000395860 OVOS2A0A0J9YW53 1432 aa27.41■■□□□ 1.98
VCPKMT-202ENST00000395860 OVOS2Q6IE36 1432 aa27.41■■□□□ 1.98
VCPKMT-202ENST00000395860 USP54Q70EL1 1684 aa27.39■■□□□ 1.98
VCPKMT-202ENST00000395860 TRPM3Q9HCF6 1732 aaPredicted RBP27.38■■□□□ 1.97
VCPKMT-202ENST00000395860 USP31Q70CQ4 1352 aa27.38■■□□□ 1.97
VCPKMT-202ENST00000395860 CFAP53Q96M91 514 aa27.37■■□□□ 1.97
VCPKMT-202ENST00000395860 MARF1Q9Y4F3 1742 aaKnown RBP27.37■■□□□ 1.97
VCPKMT-202ENST00000395860 ABTB2Q8N961 1025 aa27.37■■□□□ 1.97
VCPKMT-202ENST00000395860 SLAIN2Q9P270 581 aa27.37■■□□□ 1.97
VCPKMT-202ENST00000395860 AATKQ6ZMQ8 1374 aa27.36■■□□□ 1.97
VCPKMT-202ENST00000395860 XPCQ01831 940 aaPredicted RBP27.35■■□□□ 1.97
VCPKMT-202ENST00000395860 KRT28Q7Z3Y7 464 aa27.35■■□□□ 1.97
VCPKMT-202ENST00000395860 NLRP6P59044 892 aa27.35■■□□□ 1.97
VCPKMT-202ENST00000395860 WDR43Q15061 677 aaKnown RBP eCLIP27.34■■□□□ 1.97
VCPKMT-202ENST00000395860 SHPRHQ149N8 1683 aa27.33■■□□□ 1.97
VCPKMT-202ENST00000395860 FBLN1P23142 703 aa27.33■■□□□ 1.97
VCPKMT-202ENST00000395860 NPHP3Q7Z494 1330 aa27.32■■□□□ 1.96
VCPKMT-202ENST00000395860 HNRNPUQ00839 825 aaKnown RBP eCLIP27.32■■□□□ 1.96
VCPKMT-202ENST00000395860 NUTM2GQ5VZR2 741 aa27.32■■□□□ 1.96
VCPKMT-202ENST00000395860 BRINP3Q76B58 766 aa27.32■■□□□ 1.96
VCPKMT-202ENST00000395860 POLKQ9UBT6 870 aa27.32■■□□□ 1.96
VCPKMT-202ENST00000395860 SMG6Q86US8 1419 aaKnown RBP27.29■■□□□ 1.96
VCPKMT-202ENST00000395860 PPM1GO15355 546 aaPredicted RBP27.29■■□□□ 1.96
VCPKMT-202ENST00000395860 CENPBP07199 599 aaPredicted RBP27.29■■□□□ 1.96
VCPKMT-202ENST00000395860 DDX17Q92841 729 aaKnown RBP27.29■■□□□ 1.96
VCPKMT-202ENST00000395860 ALS2Q96Q42 1657 aa27.28■■□□□ 1.96
VCPKMT-202ENST00000395860 ADAMTS8Q9UP79 889 aa27.27■■□□□ 1.96
VCPKMT-202ENST00000395860 EMILIN1Q9Y6C2 1016 aa27.27■■□□□ 1.96
VCPKMT-202ENST00000395860 SOX12O15370 315 aa27.27■■□□□ 1.96
VCPKMT-202ENST00000395860 RRS1Q15050 365 aaKnown RBP27.27■■□□□ 1.96
VCPKMT-202ENST00000395860 COL3A1P02461 1466 aaPredicted RBP27.26■■□□□ 1.96
VCPKMT-202ENST00000395860 PXDNQ92626 1479 aa27.26■■□□□ 1.95
VCPKMT-202ENST00000395860 CDK12Q9NYV4 1490 aaPredicted RBP27.26■■□□□ 1.95
VCPKMT-202ENST00000395860 INSRP06213 1382 aa27.26■■□□□ 1.95
VCPKMT-202ENST00000395860 LMOD2Q6P5Q4 547 aa27.25■■□□□ 1.95
VCPKMT-202ENST00000395860 SBNO1A3KN83 1393 aa27.25■■□□□ 1.95
VCPKMT-202ENST00000395860 PNPLA6Q8IY17 1366 aa27.25■■□□□ 1.95
VCPKMT-202ENST00000395860 NHSL1Q5SYE7 1610 aa27.23■■□□□ 1.95
VCPKMT-202ENST00000395860 BLMP54132 1417 aaPredicted RBP27.22■■□□□ 1.95
VCPKMT-202ENST00000395860 PEAK1Q9H792 1746 aa27.21■■□□□ 1.95
VCPKMT-202ENST00000395860 DIAPH1O60610 1272 aaKnown RBP27.21■■□□□ 1.95
VCPKMT-202ENST00000395860 NUDCQ9Y266 331 aa27.21■■□□□ 1.95
VCPKMT-202ENST00000395860 TNS3Q68CZ2 1445 aa27.21■■□□□ 1.95
VCPKMT-202ENST00000395860 LTN1O94822 1766 aa27.2■■□□□ 1.95
VCPKMT-202ENST00000395860 ROBO1Q9Y6N7 1651 aa27.2■■□□□ 1.94
VCPKMT-202ENST00000395860 SLIT3O75094 1523 aa27.18■■□□□ 1.94
VCPKMT-202ENST00000395860 KCNH5Q8NCM2 988 aa27.17■■□□□ 1.94
VCPKMT-202ENST00000395860 MAP3K19Q56UN5 1328 aa27.17■■□□□ 1.94
VCPKMT-202ENST00000395860 NFAT5O94916 1531 aa27.17■■□□□ 1.94
VCPKMT-202ENST00000395860 SOS2Q07890 1332 aaPredicted RBP27.16■■□□□ 1.94
VCPKMT-202ENST00000395860 SPATA31A3Q5VYP0 1347 aa27.16■■□□□ 1.94
VCPKMT-202ENST00000395860 U2SURPO15042 1029 aaKnown RBP27.15■■□□□ 1.94
VCPKMT-202ENST00000395860 USP19O94966 1318 aa27.15■■□□□ 1.94
VCPKMT-202ENST00000395860 U2AF1L5P0DN76 240 aaPredicted RBP27.14■■□□□ 1.94
VCPKMT-202ENST00000395860 U2AF1Q01081 240 aaKnown RBP eCLIP27.14■■□□□ 1.94
VCPKMT-202ENST00000395860 PLEKHG5O94827 1062 aa27.14■■□□□ 1.93
VCPKMT-202ENST00000395860 AMPHP49418 695 aa27.14■■□□□ 1.93
VCPKMT-202ENST00000395860 ZBED9Q6R2W3 1325 aa27.14■■□□□ 1.93
VCPKMT-202ENST00000395860 ARHGEF10O15013 1369 aa27.14■■□□□ 1.93
VCPKMT-202ENST00000395860 FLT4P35916 1363 aa27.14■■□□□ 1.93
VCPKMT-202ENST00000395860 PHRF1Q9P1Y6 1649 aaKnown RBP27.13■■□□□ 1.93
VCPKMT-202ENST00000395860 KIF24Q5T7B8 1368 aa27.12■■□□□ 1.93
VCPKMT-202ENST00000395860 MED1Q15648 1581 aaPredicted RBP27.12■■□□□ 1.93
VCPKMT-202ENST00000395860 SENP3-EIF4A1A0A087X0R7 540 aa27.12■■□□□ 1.93
VCPKMT-202ENST00000395860 CCDC146Q8IYE0 955 aa27.12■■□□□ 1.93
VCPKMT-202ENST00000395860 GCP02774 474 aa27.11■■□□□ 1.93
VCPKMT-202ENST00000395860 CRYBG1Q9Y4K1 1723 aa27.1■■□□□ 1.93
VCPKMT-202ENST00000395860 IL13P35225 146 aa27.1■■□□□ 1.93
VCPKMT-202ENST00000395860 TOM1O60784 492 aa27.09■■□□□ 1.93
VCPKMT-202ENST00000395860 HSP90AB2PQ58FF8 381 aa27.09■■□□□ 1.93
VCPKMT-202ENST00000395860 AHDC1Q5TGY3 1603 aaPredicted RBP27.08■■□□□ 1.93
VCPKMT-202ENST00000395860 IQSEC2Q5JU85 1478 aa27.08■■□□□ 1.93
VCPKMT-202ENST00000395860 RTL1A6NKG5 1358 aa27.08■■□□□ 1.92
VCPKMT-202ENST00000395860 HOXC9P31274 260 aa27.07■■□□□ 1.92
VCPKMT-202ENST00000395860 EIF4A2Q14240 407 aaKnown RBP27.06■■□□□ 1.92
VCPKMT-202ENST00000395860 RUNDC1Q96C34 613 aa27.06■■□□□ 1.92
VCPKMT-202ENST00000395860 ZBTB7CA1YPR0 619 aa27.05■■□□□ 1.92
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms