RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 C11orf95C9JLR9 678 aaPredicted RBP9.88□□□□□ -0.83
LIMA1-202ENST00000394943 BCANQ96GW7 911 aa9.88□□□□□ -0.83
LIMA1-202ENST00000394943 ZNF692Q9BU19 519 aaPredicted RBP9.88□□□□□ -0.83
LIMA1-202ENST00000394943 A0A1W2PP64 1363 aa9.88□□□□□ -0.83
LIMA1-202ENST00000394943 PNPLA6Q8IY17 1366 aa9.88□□□□□ -0.83
LIMA1-202ENST00000394943 KIF7Q2M1P5 1343 aa9.88□□□□□ -0.83
LIMA1-202ENST00000394943 ATF3P18847 181 aa9.88□□□□□ -0.83
LIMA1-202ENST00000394943 LTN1O94822 1766 aa9.88□□□□□ -0.83
LIMA1-202ENST00000394943 PLEKHG2Q9H7P9 1386 aa9.87□□□□□ -0.83
LIMA1-202ENST00000394943 WASHC2AQ641Q2 1341 aa9.87□□□□□ -0.83
LIMA1-202ENST00000394943 NCAPD2Q15021 1401 aa9.87□□□□□ -0.83
LIMA1-202ENST00000394943 ARHGEF10O15013 1369 aa9.87□□□□□ -0.83
LIMA1-202ENST00000394943 NPHP3Q7Z494 1330 aa9.87□□□□□ -0.83
LIMA1-202ENST00000394943 CPDO75976 1380 aa9.87□□□□□ -0.83
LIMA1-202ENST00000394943 SPATA31A3Q5VYP0 1347 aa9.87□□□□□ -0.83
LIMA1-202ENST00000394943 MINK1Q8N4C8 1332 aaPredicted RBP9.87□□□□□ -0.83
LIMA1-202ENST00000394943 KIF24Q5T7B8 1368 aa9.86□□□□□ -0.83
LIMA1-202ENST00000394943 PEAK1Q9H792 1746 aa9.86□□□□□ -0.83
LIMA1-202ENST00000394943 PER1O15534 1290 aaPredicted RBP9.86□□□□□ -0.83
LIMA1-202ENST00000394943 PHF8Q9UPP1 1060 aa9.86□□□□□ -0.83
LIMA1-202ENST00000394943 INSRP06213 1382 aa9.85□□□□□ -0.83
LIMA1-202ENST00000394943 AATKQ6ZMQ8 1374 aa9.85□□□□□ -0.83
LIMA1-202ENST00000394943 JCADQ9P266 1359 aa9.84□□□□□ -0.83
LIMA1-202ENST00000394943 LRP6O75581 1613 aa9.84□□□□□ -0.83
LIMA1-202ENST00000394943 ACEP12821 1306 aa9.84□□□□□ -0.83
LIMA1-202ENST00000394943 SPATA31A6Q5VVP1 1343 aa9.84□□□□□ -0.83
LIMA1-202ENST00000394943 KTN1Q86UP2 1357 aaKnown RBP9.83□□□□□ -0.84
LIMA1-202ENST00000394943 ORAI2Q96SN7 254 aa9.83□□□□□ -0.84
LIMA1-202ENST00000394943 SLIT2O94813 1529 aa9.83□□□□□ -0.84
LIMA1-202ENST00000394943 CABP2Q9NPB3 220 aa9.82□□□□□ -0.84
LIMA1-202ENST00000394943 THSD7AQ9UPZ6 1657 aa9.82□□□□□ -0.84
LIMA1-202ENST00000394943 COL3A1P02461 1466 aaPredicted RBP9.81□□□□□ -0.84
LIMA1-202ENST00000394943 RTL1A6NKG5 1358 aa9.81□□□□□ -0.84
LIMA1-202ENST00000394943 CARD14Q9BXL6 1004 aa9.81□□□□□ -0.84
LIMA1-202ENST00000394943 TTC21BQ7Z4L5 1316 aa9.81□□□□□ -0.84
LIMA1-202ENST00000394943 PSME1Q06323 249 aa9.8□□□□□ -0.84
LIMA1-202ENST00000394943 CABP1Q9NZU7 370 aa9.8□□□□□ -0.84
LIMA1-202ENST00000394943 PARP4Q9UKK3 1724 aaKnown RBP9.8□□□□□ -0.84
LIMA1-202ENST00000394943 UBAP1LF5GYI3 381 aa9.8□□□□□ -0.84
LIMA1-202ENST00000394943 MAP2P11137 1827 aaKnown RBP9.8□□□□□ -0.84
LIMA1-202ENST00000394943 PARD3Q8TEW0 1356 aa9.79□□□□□ -0.84
LIMA1-202ENST00000394943 AMER1Q5JTC6 1135 aaPredicted RBP9.79□□□□□ -0.84
LIMA1-202ENST00000394943 TERF2IPQ9NYB0 399 aa9.79□□□□□ -0.84
LIMA1-202ENST00000394943 RGPD5Q99666 1765 aa9.79□□□□□ -0.84
LIMA1-202ENST00000394943 NSD3Q9BZ95 1437 aa9.79□□□□□ -0.84
LIMA1-202ENST00000394943 LRRC59Q96AG4 307 aaKnown RBP9.79□□□□□ -0.84
LIMA1-202ENST00000394943 RBM33Q96EV2 1170 aaKnown RBP9.79□□□□□ -0.84
LIMA1-202ENST00000394943 ADAMTS7Q9UKP4 1686 aa9.79□□□□□ -0.84
LIMA1-202ENST00000394943 CDK12Q9NYV4 1490 aaPredicted RBP9.79□□□□□ -0.84
LIMA1-202ENST00000394943 PKD1L3Q7Z443 1732 aa9.79□□□□□ -0.84
LIMA1-202ENST00000394943 HIRIP3Q9BW71 556 aaPredicted RBP9.78□□□□□ -0.84
LIMA1-202ENST00000394943 SHANK3Q9BYB0 1731 aa9.78□□□□□ -0.84
LIMA1-202ENST00000394943 KRT28Q7Z3Y7 464 aa9.78□□□□□ -0.84
LIMA1-202ENST00000394943 ESCO1Q5FWF5 840 aa9.77□□□□□ -0.84
LIMA1-202ENST00000394943 BLMP54132 1417 aaPredicted RBP9.77□□□□□ -0.85
LIMA1-202ENST00000394943 SRPK2P78362 688 aaKnown RBP9.77□□□□□ -0.85
LIMA1-202ENST00000394943 SLC12A5Q9H2X9 1139 aa9.77□□□□□ -0.85
LIMA1-202ENST00000394943 CGNL1Q0VF96 1302 aa9.77□□□□□ -0.85
LIMA1-202ENST00000394943 HDGFL2Q7Z4V5 671 aaPredicted RBP9.76□□□□□ -0.85
LIMA1-202ENST00000394943 ATRNO75882 1429 aa9.76□□□□□ -0.85
LIMA1-202ENST00000394943 SAFB2Q14151 953 aaKnown RBP eCLIP9.75□□□□□ -0.85
LIMA1-202ENST00000394943 HSPA1LP34931 641 aa9.75□□□□□ -0.85
LIMA1-202ENST00000394943 FYB1O15117 783 aa9.75□□□□□ -0.85
LIMA1-202ENST00000394943 ZNF316A6NFI3 1004 aaPredicted RBP9.74□□□□□ -0.85
LIMA1-202ENST00000394943 GLI3P10071 1580 aa9.74□□□□□ -0.85
LIMA1-202ENST00000394943 BCL9LQ86UU0 1499 aa9.73□□□□□ -0.85
LIMA1-202ENST00000394943 C14orf37Q86TY3 774 aa9.73□□□□□ -0.85
LIMA1-202ENST00000394943 CICQ96RK0 1608 aaPredicted RBP9.73□□□□□ -0.85
LIMA1-202ENST00000394943 COL5A2P05997 1499 aaPredicted RBP9.73□□□□□ -0.85
LIMA1-202ENST00000394943 FNBP4Q8N3X1 1017 aaPredicted RBP9.73□□□□□ -0.85
LIMA1-202ENST00000394943 DISP2A7MBM2 1401 aa9.73□□□□□ -0.85
LIMA1-202ENST00000394943 RGPD3A6NKT7 1758 aaPredicted RBP9.72□□□□□ -0.85
LIMA1-202ENST00000394943 RGPD4Q7Z3J3 1758 aa9.72□□□□□ -0.85
LIMA1-202ENST00000394943 RGPD2P0DJD1 1756 aa9.72□□□□□ -0.85
LIMA1-202ENST00000394943 LRRC37A3O60309 1634 aa9.72□□□□□ -0.85
LIMA1-202ENST00000394943 SENP3Q9H4L4 574 aaPredicted RBP9.72□□□□□ -0.85
LIMA1-202ENST00000394943 PANK3Q9H999 370 aa9.72□□□□□ -0.85
LIMA1-202ENST00000394943 FOXO3O43524 673 aa9.71□□□□□ -0.85
LIMA1-202ENST00000394943 KCNH5Q8NCM2 988 aa9.71□□□□□ -0.85
LIMA1-202ENST00000394943 BCL9O00512 1426 aa9.71□□□□□ -0.86
LIMA1-202ENST00000394943 ARHGEF25Q86VW2 580 aa9.71□□□□□ -0.86
LIMA1-202ENST00000394943 PMFBP1Q8TBY8 1022 aa9.71□□□□□ -0.86
LIMA1-202ENST00000394943 NLRP13Q86W25 1043 aa9.7□□□□□ -0.86
LIMA1-202ENST00000394943 NGDNQ8NEJ9 315 aaKnown RBP9.7□□□□□ -0.86
LIMA1-202ENST00000394943 ZNF831Q5JPB2 1677 aa9.7□□□□□ -0.86
LIMA1-202ENST00000394943 DDX17Q92841 729 aaKnown RBP9.68□□□□□ -0.86
LIMA1-202ENST00000394943 SIPA1L3O60292 1781 aaPredicted RBP9.68□□□□□ -0.86
LIMA1-202ENST00000394943 VIRMAQ69YN4 1812 aaKnown RBP9.67□□□□□ -0.86
LIMA1-202ENST00000394943 KDRP35968 1356 aa9.67□□□□□ -0.86
LIMA1-202ENST00000394943 ONECUT3O60422 494 aaPredicted RBP9.67□□□□□ -0.86
LIMA1-202ENST00000394943 NME9Q86XW9 330 aa9.67□□□□□ -0.86
LIMA1-202ENST00000394943 PAPPAQ13219 1627 aa9.67□□□□□ -0.86
LIMA1-202ENST00000394943 GCP02774 474 aa9.67□□□□□ -0.86
LIMA1-202ENST00000394943 FLT4P35916 1363 aa9.66□□□□□ -0.86
LIMA1-202ENST00000394943 RALBP1Q15311 655 aa9.66□□□□□ -0.86
LIMA1-202ENST00000394943 IP6K1Q92551 441 aa9.65□□□□□ -0.86
LIMA1-202ENST00000394943 BRWD3Q6RI45 1802 aa9.65□□□□□ -0.86
LIMA1-202ENST00000394943 SBF2Q86WG5 1849 aa9.65□□□□□ -0.86
LIMA1-202ENST00000394943 PIP4K2BP78356 416 aa9.64□□□□□ -0.87
LIMA1-202ENST00000394943 KIAA0232Q92628 1395 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 203.2 ms