RNA–Protein interactions for RNA: ENST00000393310.5

LIMS1-203, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 4,392 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-203ENST00000393310 NUDCQ9Y266 331 aa10.62□□□□□ -0.71
LIMS1-203ENST00000393310 ARHGAP31Q2M1Z3 1444 aa10.62□□□□□ -0.71
LIMS1-203ENST00000393310 DDX54Q8TDD1 881 aaKnown RBP10.62□□□□□ -0.71
LIMS1-203ENST00000393310 PNNQ9H307 717 aaKnown RBP10.62□□□□□ -0.71
LIMS1-203ENST00000393310 REREQ9P2R6 1566 aa10.62□□□□□ -0.71
LIMS1-203ENST00000393310 AATKQ6ZMQ8 1374 aa10.61□□□□□ -0.71
LIMS1-203ENST00000393310 ARHGEF6Q15052 776 aa10.61□□□□□ -0.71
LIMS1-203ENST00000393310 SAMD9LQ8IVG5 1584 aa10.61□□□□□ -0.71
LIMS1-203ENST00000393310 MED1Q15648 1581 aaPredicted RBP10.6□□□□□ -0.71
LIMS1-203ENST00000393310 TTC5Q8N0Z6 440 aa10.6□□□□□ -0.71
LIMS1-203ENST00000393310 LMOD1P29536 600 aaPredicted RBP10.6□□□□□ -0.71
LIMS1-203ENST00000393310 SIRT1Q96EB6 747 aa10.59□□□□□ -0.71
LIMS1-203ENST00000393310 ATF5Q9Y2D1 282 aaPredicted RBP10.59□□□□□ -0.71
LIMS1-203ENST00000393310 DIP2CQ9Y2E4 1556 aa10.59□□□□□ -0.71
LIMS1-203ENST00000393310 MTFR1LQ9H019 292 aa10.59□□□□□ -0.71
LIMS1-203ENST00000393310 ZPR1O75312 459 aa10.59□□□□□ -0.71
LIMS1-203ENST00000393310 TRIM26Q12899 539 aaPredicted RBP10.58□□□□□ -0.72
LIMS1-203ENST00000393310 NUTM2GQ5VZR2 741 aa10.58□□□□□ -0.72
LIMS1-203ENST00000393310 TMF1P82094 1093 aa10.58□□□□□ -0.72
LIMS1-203ENST00000393310 ORAI2Q96SN7 254 aa10.58□□□□□ -0.72
LIMS1-203ENST00000393310 CDK19Q9BWU1 502 aa10.58□□□□□ -0.72
LIMS1-203ENST00000393310 LTBP4Q8N2S1 1624 aa10.58□□□□□ -0.72
LIMS1-203ENST00000393310 APPP05067 770 aa10.58□□□□□ -0.72
LIMS1-203ENST00000393310 BRD4O60885 1362 aaPredicted RBP10.57□□□□□ -0.72
LIMS1-203ENST00000393310 DEFB132Q7Z7B7 95 aa10.57□□□□□ -0.72
LIMS1-203ENST00000393310 NUDT16Q96DE0 195 aaKnown RBP10.57□□□□□ -0.72
LIMS1-203ENST00000393310 PDZRN3Q9UPQ7 1066 aa10.57□□□□□ -0.72
LIMS1-203ENST00000393310 ZNF330Q9Y3S2 320 aaPredicted RBP10.57□□□□□ -0.72
LIMS1-203ENST00000393310 CENPJQ9HC77 1338 aaPredicted RBP10.57□□□□□ -0.72
LIMS1-203ENST00000393310 NINLQ9Y2I6 1382 aa10.57□□□□□ -0.72
LIMS1-203ENST00000393310 RTF1Q92541 710 aaKnown RBP10.56□□□□□ -0.72
LIMS1-203ENST00000393310 A0A087WZG4 1122 aa10.56□□□□□ -0.72
LIMS1-203ENST00000393310 ADGRL3Q9HAR2 1447 aa10.56□□□□□ -0.72
LIMS1-203ENST00000393310 CDK12Q9NYV4 1490 aaPredicted RBP10.56□□□□□ -0.72
LIMS1-203ENST00000393310 SOGA3Q5TF21 947 aa10.56□□□□□ -0.72
LIMS1-203ENST00000393310 CARD11Q9BXL7 1154 aa10.56□□□□□ -0.72
LIMS1-203ENST00000393310 RFC4P35249 363 aa10.56□□□□□ -0.72
LIMS1-203ENST00000393310 ADGBQ8N7X0 1667 aa10.55□□□□□ -0.72
LIMS1-203ENST00000393310 LRRC7Q96NW7 1537 aa10.55□□□□□ -0.72
LIMS1-203ENST00000393310 MPHOSPH9Q99550 1183 aa10.55□□□□□ -0.72
LIMS1-203ENST00000393310 WASLO00401 505 aaPredicted RBP10.55□□□□□ -0.72
LIMS1-203ENST00000393310 ARHGAP27Q6ZUM4 889 aa10.55□□□□□ -0.72
LIMS1-203ENST00000393310 FNBP4Q8N3X1 1017 aaPredicted RBP10.55□□□□□ -0.72
LIMS1-203ENST00000393310 USP47Q96K76 1375 aa10.55□□□□□ -0.72
LIMS1-203ENST00000393310 IL2RBP14784 551 aa10.55□□□□□ -0.72
LIMS1-203ENST00000393310 CCDC7Q96M83 1385 aa10.54□□□□□ -0.72
LIMS1-203ENST00000393310 CHRNA2Q15822 529 aa10.54□□□□□ -0.72
LIMS1-203ENST00000393310 PLEKHO1Q53GL0 409 aaPredicted RBP10.54□□□□□ -0.72
LIMS1-203ENST00000393310 CCNL1Q9UK58 526 aaPredicted RBP10.54□□□□□ -0.72
LIMS1-203ENST00000393310 SPATA31A3Q5VYP0 1347 aa10.53□□□□□ -0.72
LIMS1-203ENST00000393310 FCHSD2O94868 740 aa10.53□□□□□ -0.72
LIMS1-203ENST00000393310 PTMAP06454 111 aaKnown RBP10.53□□□□□ -0.72
LIMS1-203ENST00000393310 CANXP27824 592 aaKnown RBP10.53□□□□□ -0.72
LIMS1-203ENST00000393310 APLP1P51693 650 aa10.53□□□□□ -0.72
LIMS1-203ENST00000393310 SLC27A3Q5K4L6 730 aa10.53□□□□□ -0.72
LIMS1-203ENST00000393310 TMEM132EQ6IEE7 984 aa10.53□□□□□ -0.72
LIMS1-203ENST00000393310 TNS4Q8IZW8 715 aa10.53□□□□□ -0.72
LIMS1-203ENST00000393310 TMOD3Q9NYL9 352 aa10.53□□□□□ -0.72
LIMS1-203ENST00000393310 ZNF652Q9Y2D9 606 aa10.53□□□□□ -0.72
LIMS1-203ENST00000393310 RNF17Q9BXT8 1623 aaKnown RBP10.53□□□□□ -0.72
LIMS1-203ENST00000393310 RBM42Q9BTD8 480 aaKnown RBP10.52□□□□□ -0.72
LIMS1-203ENST00000393310 MYO3AQ8NEV4 1616 aa10.52□□□□□ -0.73
LIMS1-203ENST00000393310 FGD1P98174 961 aa10.52□□□□□ -0.73
LIMS1-203ENST00000393310 SYNMO15061 1565 aa10.52□□□□□ -0.73
LIMS1-203ENST00000393310 MED14O60244 1454 aa10.51□□□□□ -0.73
LIMS1-203ENST00000393310 PNPLA6Q8IY17 1366 aa10.51□□□□□ -0.73
LIMS1-203ENST00000393310 CAPN15O75808 1086 aa10.51□□□□□ -0.73
LIMS1-203ENST00000393310 ZBTB7AO95365 584 aa10.51□□□□□ -0.73
LIMS1-203ENST00000393310 SUGP2Q8IX01 1082 aaKnown RBP eCLIP10.51□□□□□ -0.73
LIMS1-203ENST00000393310 PRDM15P57071 1507 aaPredicted RBP10.51□□□□□ -0.73
LIMS1-203ENST00000393310 TTC21AQ8NDW8 1320 aa10.51□□□□□ -0.73
LIMS1-203ENST00000393310 SALL2Q9Y467 1007 aaPredicted RBP10.51□□□□□ -0.73
LIMS1-203ENST00000393310 CABLES1Q8TDN4 633 aa10.51□□□□□ -0.73
LIMS1-203ENST00000393310 BCS1LQ9Y276 419 aa10.51□□□□□ -0.73
LIMS1-203ENST00000393310 RAB3GAP2Q9H2M9 1393 aa10.51□□□□□ -0.73
LIMS1-203ENST00000393310 PATL2C9JE40 543 aaKnown RBP10.51□□□□□ -0.73
LIMS1-203ENST00000393310 NLGN1Q8N2Q7 840 aa10.51□□□□□ -0.73
LIMS1-203ENST00000393310 PSMD1Q99460 953 aa10.51□□□□□ -0.73
LIMS1-203ENST00000393310 BCCIPQ9P287 314 aaKnown RBP eCLIP10.51□□□□□ -0.73
LIMS1-203ENST00000393310 RTCBQ9Y3I0 505 aaKnown RBP10.51□□□□□ -0.73
LIMS1-203ENST00000393310 PREX2Q70Z35 1606 aa10.5□□□□□ -0.73
LIMS1-203ENST00000393310 SBNO1A3KN83 1393 aa10.5□□□□□ -0.73
LIMS1-203ENST00000393310 JDP2Q8WYK2 163 aa10.5□□□□□ -0.73
LIMS1-203ENST00000393310 GOLGA2Q08379 1002 aa10.49□□□□□ -0.73
LIMS1-203ENST00000393310 KANK4Q5T7N3 995 aaPredicted RBP10.49□□□□□ -0.73
LIMS1-203ENST00000393310 WAPLQ7Z5K2 1190 aa10.49□□□□□ -0.73
LIMS1-203ENST00000393310 TEFQ10587 303 aa10.49□□□□□ -0.73
LIMS1-203ENST00000393310 PPP4R3CPQ6ZMV5 832 aa10.49□□□□□ -0.73
LIMS1-203ENST00000393310 CLTCQ00610 1675 aaKnown RBP10.49□□□□□ -0.73
LIMS1-203ENST00000393310 NF2P35240 595 aa10.49□□□□□ -0.73
LIMS1-203ENST00000393310 ECE1P42892 770 aa10.49□□□□□ -0.73
LIMS1-203ENST00000393310 KNSTRNQ9Y448 316 aa10.49□□□□□ -0.73
LIMS1-203ENST00000393310 NBR1Q14596 966 aa10.48□□□□□ -0.73
LIMS1-203ENST00000393310 SOS2Q07890 1332 aaPredicted RBP10.48□□□□□ -0.73
LIMS1-203ENST00000393310 ANP32BQ92688 251 aaKnown RBP10.48□□□□□ -0.73
LIMS1-203ENST00000393310 TRIM44Q96DX7 344 aaPredicted RBP10.48□□□□□ -0.73
LIMS1-203ENST00000393310 RSPH6AQ9H0K4 717 aa10.47□□□□□ -0.73
LIMS1-203ENST00000393310 IQCA1LA6NCM1 817 aa10.47□□□□□ -0.73
LIMS1-203ENST00000393310 MROH2AA6NES4 1674 aa10.47□□□□□ -0.73
LIMS1-203ENST00000393310 CABP4P57796 275 aa10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 96.2 ms