RNA–Protein interactions for RNA: ENST00000374732.7

USP48-203, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2 BASIC

Gene USP48, Length 3,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-203ENST00000374732 RAB3GAP2Q9H2M9 1393 aa9.94□□□□□ -0.82
USP48-203ENST00000374732 SUPT6HQ7KZ85 1726 aaKnown RBP9.94□□□□□ -0.82
USP48-203ENST00000374732 CTDP1Q9Y5B0 961 aaPredicted RBP9.94□□□□□ -0.82
USP48-203ENST00000374732 HECW1Q76N89 1606 aa9.94□□□□□ -0.82
USP48-203ENST00000374732 FGD6Q6ZV73 1430 aa9.93□□□□□ -0.82
USP48-203ENST00000374732 ZKSCAN8Q15776 578 aaPredicted RBP9.93□□□□□ -0.82
USP48-203ENST00000374732 IGSF5Q9NSI5 407 aa9.93□□□□□ -0.82
USP48-203ENST00000374732 NUTM2GQ5VZR2 741 aa9.93□□□□□ -0.82
USP48-203ENST00000374732 CD109Q6YHK3 1445 aa9.93□□□□□ -0.82
USP48-203ENST00000374732 MROH2AA6NES4 1674 aa9.92□□□□□ -0.82
USP48-203ENST00000374732 TDO2P48775 406 aa9.92□□□□□ -0.82
USP48-203ENST00000374732 ZCRB1Q8TBF4 217 aaKnown RBP9.92□□□□□ -0.82
USP48-203ENST00000374732 CALRP27797 417 aaKnown RBP9.92□□□□□ -0.82
USP48-203ENST00000374732 SETDB1Q15047 1291 aa9.92□□□□□ -0.82
USP48-203ENST00000374732 GABBR1Q9UBS5 961 aa9.91□□□□□ -0.82
USP48-203ENST00000374732 AGLP35573 1532 aa9.91□□□□□ -0.82
USP48-203ENST00000374732 MTUS2Q5JR59 1369 aa9.91□□□□□ -0.82
USP48-203ENST00000374732 KIF20AO95235 890 aa9.91□□□□□ -0.82
USP48-203ENST00000374732 PMM1Q92871 262 aa9.91□□□□□ -0.82
USP48-203ENST00000374732 COL17A1Q9UMD9 1497 aaPredicted RBP9.91□□□□□ -0.82
USP48-203ENST00000374732 ZRSR2Q15696 482 aaKnown RBP9.9□□□□□ -0.82
USP48-203ENST00000374732 MYOM3Q5VTT5 1437 aa9.9□□□□□ -0.82
USP48-203ENST00000374732 FANCAO15360 1455 aa9.9□□□□□ -0.82
USP48-203ENST00000374732 MPHOSPH10O00566 681 aaKnown RBP9.9□□□□□ -0.82
USP48-203ENST00000374732 SLC20A2Q08357 652 aa9.9□□□□□ -0.82
USP48-203ENST00000374732 MORC4Q8TE76 937 aa9.9□□□□□ -0.82
USP48-203ENST00000374732 RRAGDQ9NQL2 400 aaPredicted RBP9.9□□□□□ -0.82
USP48-203ENST00000374732 NCOA2Q15596 1464 aa9.9□□□□□ -0.82
USP48-203ENST00000374732 ANP32AP39687 249 aaKnown RBP9.9□□□□□ -0.83
USP48-203ENST00000374732 NEXNQ0ZGT2 675 aa9.9□□□□□ -0.83
USP48-203ENST00000374732 CLEC4GQ6UXB4 293 aa9.9□□□□□ -0.83
USP48-203ENST00000374732 SPOCK3Q9BQ16 436 aa9.9□□□□□ -0.83
USP48-203ENST00000374732 ARHGEF12Q9NZN5 1544 aa9.9□□□□□ -0.83
USP48-203ENST00000374732 PREX1Q8TCU6 1659 aa9.89□□□□□ -0.83
USP48-203ENST00000374732 MFSD4BQ5TF39 518 aa9.89□□□□□ -0.83
USP48-203ENST00000374732 WDR78Q5VTH9 848 aa9.89□□□□□ -0.83
USP48-203ENST00000374732 POGZQ7Z3K3 1410 aa9.89□□□□□ -0.83
USP48-203ENST00000374732 STK10O94804 968 aaKnown RBP9.89□□□□□ -0.83
USP48-203ENST00000374732 ZNF777Q9ULD5 760 aaPredicted RBP9.89□□□□□ -0.83
USP48-203ENST00000374732 KDM5CP41229 1560 aa9.88□□□□□ -0.83
USP48-203ENST00000374732 CSB-PGBD3P0DP91 1061 aa9.88□□□□□ -0.83
USP48-203ENST00000374732 TCOF1Q13428 1488 aaKnown RBP9.88□□□□□ -0.83
USP48-203ENST00000374732 CHGAP10645 457 aaKnown RBP9.88□□□□□ -0.83
USP48-203ENST00000374732 KCNA1Q09470 495 aa9.88□□□□□ -0.83
USP48-203ENST00000374732 PPP4R3CPQ6ZMV5 832 aa9.88□□□□□ -0.83
USP48-203ENST00000374732 ACRBPQ8NEB7 543 aa9.88□□□□□ -0.83
USP48-203ENST00000374732 ZC3H15Q8WU90 426 aaKnown RBP9.88□□□□□ -0.83
USP48-203ENST00000374732 GPATCH3Q96I76 525 aa9.88□□□□□ -0.83
USP48-203ENST00000374732 KDM4CQ9H3R0 1056 aa9.88□□□□□ -0.83
USP48-203ENST00000374732 ATP1B4Q9UN42 357 aaPredicted RBP9.88□□□□□ -0.83
USP48-203ENST00000374732 CCT2P78371 535 aaKnown RBP9.88□□□□□ -0.83
USP48-203ENST00000374732 MLECQ14165 292 aa9.88□□□□□ -0.83
USP48-203ENST00000374732 PUS10Q3MIT2 529 aaKnown RBP9.88□□□□□ -0.83
USP48-203ENST00000374732 CT47A1Q5JQC4 288 aaPredicted RBP9.88□□□□□ -0.83
USP48-203ENST00000374732 TTC30BQ8N4P2 665 aa9.88□□□□□ -0.83
USP48-203ENST00000374732 ARHGEF10LQ9HCE6 1279 aa9.88□□□□□ -0.83
USP48-203ENST00000374732 BSDC1Q9NW68 430 aaPredicted RBP9.88□□□□□ -0.83
USP48-203ENST00000374732 ECM2O94769 699 aaPredicted RBP9.87□□□□□ -0.83
USP48-203ENST00000374732 CEP83Q9Y592 693 aa9.87□□□□□ -0.83
USP48-203ENST00000374732 HFM1A2PYH4 1435 aa9.87□□□□□ -0.83
USP48-203ENST00000374732 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.87□□□□□ -0.83
USP48-203ENST00000374732 BARGINQ6ZT62 677 aa9.87□□□□□ -0.83
USP48-203ENST00000374732 METTL14Q9HCE5 456 aaKnown RBP9.87□□□□□ -0.83
USP48-203ENST00000374732 ATP10BO94823 1461 aa9.87□□□□□ -0.83
USP48-203ENST00000374732 PARNO95453 639 aaKnown RBP9.86□□□□□ -0.83
USP48-203ENST00000374732 PDE6BP35913 854 aa9.86□□□□□ -0.83
USP48-203ENST00000374732 PTPRMP28827 1452 aa9.86□□□□□ -0.83
USP48-203ENST00000374732 VASPP50552 380 aaPredicted RBP9.86□□□□□ -0.83
USP48-203ENST00000374732 CCDC94Q9BW85 323 aaPredicted RBP9.86□□□□□ -0.83
USP48-203ENST00000374732 CDCA7Q9BWT1 371 aaPredicted RBP9.86□□□□□ -0.83
USP48-203ENST00000374732 PUF60Q9UHX1 559 aaKnown RBP9.86□□□□□ -0.83
USP48-203ENST00000374732 PTPN23Q9H3S7 1636 aa9.86□□□□□ -0.83
USP48-203ENST00000374732 MIA2Q96PC5 1412 aa9.86□□□□□ -0.83
USP48-203ENST00000374732 ITGAEP38570 1179 aa9.85□□□□□ -0.83
USP48-203ENST00000374732 C1QTNF12Q5T7M4 302 aa9.85□□□□□ -0.83
USP48-203ENST00000374732 AKNAQ7Z591 1439 aa9.85□□□□□ -0.83
USP48-203ENST00000374732 APLP1P51693 650 aa9.85□□□□□ -0.83
USP48-203ENST00000374732 SF3A1Q15459 793 aaKnown RBP9.85□□□□□ -0.83
USP48-203ENST00000374732 BDNFP23560 247 aa9.85□□□□□ -0.83
USP48-203ENST00000374732 IRX5P78411 483 aaPredicted RBP9.85□□□□□ -0.83
USP48-203ENST00000374732 GSE1Q14687 1217 aa9.85□□□□□ -0.83
USP48-203ENST00000374732 GAS2L2Q8NHY3 880 aa9.84□□□□□ -0.83
USP48-203ENST00000374732 ITFG2Q969R8 447 aa9.84□□□□□ -0.83
USP48-203ENST00000374732 MKL1Q969V6 931 aa9.84□□□□□ -0.83
USP48-203ENST00000374732 UBA5Q9GZZ9 404 aa9.84□□□□□ -0.83
USP48-203ENST00000374732 KIAA1522Q9P206 1035 aaPredicted RBP9.84□□□□□ -0.83
USP48-203ENST00000374732 FEZ2Q9UHY8 353 aaPredicted RBP9.84□□□□□ -0.83
USP48-203ENST00000374732 ZFYVE16Q7Z3T8 1539 aa9.84□□□□□ -0.83
USP48-203ENST00000374732 HS6ST3Q8IZP7 471 aa9.84□□□□□ -0.83
USP48-203ENST00000374732 HELBQ8NG08 1087 aaPredicted RBP9.84□□□□□ -0.83
USP48-203ENST00000374732 SMC3Q9UQE7 1217 aa9.84□□□□□ -0.83
USP48-203ENST00000374732 RPAINQ86UA6 219 aa9.83□□□□□ -0.84
USP48-203ENST00000374732 FBXO41Q8TF61 875 aa9.83□□□□□ -0.84
USP48-203ENST00000374732 PTPRTO14522 1441 aa9.83□□□□□ -0.84
USP48-203ENST00000374732 WDHD1O75717 1129 aaPredicted RBP9.83□□□□□ -0.84
USP48-203ENST00000374732 NAT1P18440 290 aa9.83□□□□□ -0.84
USP48-203ENST00000374732 TPX2Q9ULW0 747 aaKnown RBP9.83□□□□□ -0.84
USP48-203ENST00000374732 EXOC5O00471 708 aa9.82□□□□□ -0.84
USP48-203ENST00000374732 PES1O00541 588 aaKnown RBP9.82□□□□□ -0.84
USP48-203ENST00000374732 ZC3H12AQ5D1E8 599 aaKnown RBP9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 71.1 ms