RNA–Protein interactions for RNA: ENST00000371122.8

SMARCA1-202, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SMARCA1, Length 4,099 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1-202ENST00000371122 ERBINQ96RT1 1412 aa11.3□□□□□ -0.6
SMARCA1-202ENST00000371122 RRS1Q15050 365 aaKnown RBP11.3□□□□□ -0.6
SMARCA1-202ENST00000371122 HMMRO75330 724 aa11.29□□□□□ -0.6
SMARCA1-202ENST00000371122 TEFQ10587 303 aa11.29□□□□□ -0.6
SMARCA1-202ENST00000371122 PDZRN3Q9UPQ7 1066 aa11.29□□□□□ -0.6
SMARCA1-202ENST00000371122 LMTK2Q8IWU2 1503 aa11.29□□□□□ -0.6
SMARCA1-202ENST00000371122 USP35Q9P2H5 1018 aa11.29□□□□□ -0.6
SMARCA1-202ENST00000371122 YEATS2Q9ULM3 1422 aa11.29□□□□□ -0.6
SMARCA1-202ENST00000371122 FOSBP53539 338 aa11.28□□□□□ -0.6
SMARCA1-202ENST00000371122 NLRP6P59044 892 aa11.28□□□□□ -0.6
SMARCA1-202ENST00000371122 ANO2Q9NQ90 1003 aa11.28□□□□□ -0.6
SMARCA1-202ENST00000371122 MIS18AQ9NYP9 233 aa11.28□□□□□ -0.6
SMARCA1-202ENST00000371122 DCTN1Q14203 1278 aa11.28□□□□□ -0.6
SMARCA1-202ENST00000371122 MPNDQ8N594 471 aa11.28□□□□□ -0.6
SMARCA1-202ENST00000371122 IQGAP3Q86VI3 1631 aa11.28□□□□□ -0.6
SMARCA1-202ENST00000371122 HSP90B1P14625 803 aaKnown RBP11.27□□□□□ -0.6
SMARCA1-202ENST00000371122 DDX19BQ9UMR2 479 aa11.27□□□□□ -0.6
SMARCA1-202ENST00000371122 BRD4O60885 1362 aaPredicted RBP11.27□□□□□ -0.61
SMARCA1-202ENST00000371122 WAPLQ7Z5K2 1190 aa11.27□□□□□ -0.61
SMARCA1-202ENST00000371122 TOMM22Q9NS69 142 aa11.27□□□□□ -0.61
SMARCA1-202ENST00000371122 TSPYL4Q9UJ04 414 aa11.27□□□□□ -0.61
SMARCA1-202ENST00000371122 XPCQ01831 940 aaPredicted RBP11.26□□□□□ -0.61
SMARCA1-202ENST00000371122 TAF7LQ5H9L4 462 aa11.26□□□□□ -0.61
SMARCA1-202ENST00000371122 C22orf23Q9BZE7 217 aa11.26□□□□□ -0.61
SMARCA1-202ENST00000371122 NOB1Q9ULX3 412 aaKnown RBP11.26□□□□□ -0.61
SMARCA1-202ENST00000371122 SYTL4Q96C24 671 aaPredicted RBP11.25□□□□□ -0.61
SMARCA1-202ENST00000371122 A2MP01023 1474 aa11.25□□□□□ -0.61
SMARCA1-202ENST00000371122 LMOD3Q0VAK6 560 aa11.25□□□□□ -0.61
SMARCA1-202ENST00000371122 C9orf78Q9NZ63 289 aaPredicted RBP11.25□□□□□ -0.61
SMARCA1-202ENST00000371122 GNL2Q13823 731 aaKnown RBP11.25□□□□□ -0.61
SMARCA1-202ENST00000371122 SULT6B1Q6IMI4 303 aa11.25□□□□□ -0.61
SMARCA1-202ENST00000371122 KDM4AO75164 1064 aa11.25□□□□□ -0.61
SMARCA1-202ENST00000371122 PSME1Q06323 249 aa11.25□□□□□ -0.61
SMARCA1-202ENST00000371122 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.25□□□□□ -0.61
SMARCA1-202ENST00000371122 BACH2Q9BYV9 841 aa11.25□□□□□ -0.61
SMARCA1-202ENST00000371122 DHX29Q7Z478 1369 aaKnown RBP11.24□□□□□ -0.61
SMARCA1-202ENST00000371122 CREBRFQ8IUR6 639 aa11.24□□□□□ -0.61
SMARCA1-202ENST00000371122 FBXW7Q969H0 707 aa11.24□□□□□ -0.61
SMARCA1-202ENST00000371122 ST18O60284 1047 aa11.23□□□□□ -0.61
SMARCA1-202ENST00000371122 ANKRD30BQ9BXX2 1392 aa11.23□□□□□ -0.61
SMARCA1-202ENST00000371122 CDK19Q9BWU1 502 aa11.23□□□□□ -0.61
SMARCA1-202ENST00000371122 RNF214Q8ND24 703 aa11.22□□□□□ -0.61
SMARCA1-202ENST00000371122 ADGRF5Q8IZF2 1346 aa11.22□□□□□ -0.61
SMARCA1-202ENST00000371122 FBXO31Q5XUX0 539 aaPredicted RBP11.21□□□□□ -0.61
SMARCA1-202ENST00000371122 FER1L4A9Z1Z3 1794 aa11.21□□□□□ -0.61
SMARCA1-202ENST00000371122 MAP4K4O95819 1239 aaPredicted RBP11.21□□□□□ -0.61
SMARCA1-202ENST00000371122 TET3O43151 1660 aa11.21□□□□□ -0.62
SMARCA1-202ENST00000371122 C1orf141Q5JVX7 400 aa11.21□□□□□ -0.62
SMARCA1-202ENST00000371122 NLRP2Q9NX02 1062 aa11.21□□□□□ -0.62
SMARCA1-202ENST00000371122 FAM177BA6PVY3 158 aa11.2□□□□□ -0.62
SMARCA1-202ENST00000371122 CAMSAP1Q5T5Y3 1602 aa11.2□□□□□ -0.62
SMARCA1-202ENST00000371122 TWISTNBQ3B726 338 aaPredicted RBP11.2□□□□□ -0.62
SMARCA1-202ENST00000371122 MCTP1Q6DN14 999 aa11.2□□□□□ -0.62
SMARCA1-202ENST00000371122 WWC1Q8IX03 1113 aa11.2□□□□□ -0.62
SMARCA1-202ENST00000371122 ABTB2Q8N961 1025 aa11.2□□□□□ -0.62
SMARCA1-202ENST00000371122 SLC4A2P04920 1241 aa11.19□□□□□ -0.62
SMARCA1-202ENST00000371122 GNAI1P63096 354 aa11.19□□□□□ -0.62
SMARCA1-202ENST00000371122 KDM5AP29375 1690 aaKnown RBP11.19□□□□□ -0.62
SMARCA1-202ENST00000371122 CDK11BP21127 795 aaKnown RBP11.19□□□□□ -0.62
SMARCA1-202ENST00000371122 DIAPH3Q9NSV4 1193 aa11.19□□□□□ -0.62
SMARCA1-202ENST00000371122 CEP152O94986 1710 aa11.19□□□□□ -0.62
SMARCA1-202ENST00000371122 VPS37CA5D8V6 355 aaPredicted RBP11.19□□□□□ -0.62
SMARCA1-202ENST00000371122 API5Q9BZZ5 524 aaKnown RBP11.19□□□□□ -0.62
SMARCA1-202ENST00000371122 ABCC3O15438 1527 aa11.18□□□□□ -0.62
SMARCA1-202ENST00000371122 C3P01024 1663 aa11.18□□□□□ -0.62
SMARCA1-202ENST00000371122 SURF6O75683 361 aaKnown RBP11.18□□□□□ -0.62
SMARCA1-202ENST00000371122 GTF2E1P29083 439 aaPredicted RBP11.18□□□□□ -0.62
SMARCA1-202ENST00000371122 TNNQ9UQP3 1299 aa11.18□□□□□ -0.62
SMARCA1-202ENST00000371122 PIK3C2BO00750 1634 aa11.17□□□□□ -0.62
SMARCA1-202ENST00000371122 MCM10Q7L590 875 aa11.17□□□□□ -0.62
SMARCA1-202ENST00000371122 ARHGAP31Q2M1Z3 1444 aa11.17□□□□□ -0.62
SMARCA1-202ENST00000371122 CCDC27Q2M243 656 aa11.17□□□□□ -0.62
SMARCA1-202ENST00000371122 DDX54Q8TDD1 881 aaKnown RBP11.17□□□□□ -0.62
SMARCA1-202ENST00000371122 CHMP5Q9NZZ3 219 aa11.17□□□□□ -0.62
SMARCA1-202ENST00000371122 EFCAB6Q5THR3 1501 aa11.17□□□□□ -0.62
SMARCA1-202ENST00000371122 KIF16BQ96L93 1317 aa11.17□□□□□ -0.62
SMARCA1-202ENST00000371122 CEBPAP49715 358 aaPredicted RBP11.17□□□□□ -0.62
SMARCA1-202ENST00000371122 ESCO1Q5FWF5 840 aa11.17□□□□□ -0.62
SMARCA1-202ENST00000371122 TMEM57Q8N5G2 664 aa11.17□□□□□ -0.62
SMARCA1-202ENST00000371122 IL1RAPL2Q9NP60 686 aa11.17□□□□□ -0.62
SMARCA1-202ENST00000371122 E9PCH4 1651 aa11.17□□□□□ -0.62
SMARCA1-202ENST00000371122 CLTCQ00610 1675 aaKnown RBP11.17□□□□□ -0.62
SMARCA1-202ENST00000371122 MADDQ8WXG6 1647 aa11.17□□□□□ -0.62
SMARCA1-202ENST00000371122 NEURL4Q96JN8 1562 aa11.16□□□□□ -0.62
SMARCA1-202ENST00000371122 NEUROD6Q96NK8 337 aa11.16□□□□□ -0.62
SMARCA1-202ENST00000371122 SLFN5Q08AF3 891 aa11.16□□□□□ -0.62
SMARCA1-202ENST00000371122 KIAA2012Q0VF49 1180 aa11.16□□□□□ -0.62
SMARCA1-202ENST00000371122 EMILIN1Q9Y6C2 1016 aa11.16□□□□□ -0.62
SMARCA1-202ENST00000371122 ZNF142P52746 1687 aaPredicted RBP11.16□□□□□ -0.62
SMARCA1-202ENST00000371122 NEK4P51957 841 aa11.16□□□□□ -0.62
SMARCA1-202ENST00000371122 EVA1CP58658 441 aa11.16□□□□□ -0.62
SMARCA1-202ENST00000371122 IFIT2P09913 472 aaKnown RBP11.15□□□□□ -0.62
SMARCA1-202ENST00000371122 SSH1Q8WYL5 1049 aa11.15□□□□□ -0.62
SMARCA1-202ENST00000371122 GPATCH3Q96I76 525 aa11.15□□□□□ -0.62
SMARCA1-202ENST00000371122 SIL1Q9H173 461 aa11.15□□□□□ -0.62
SMARCA1-202ENST00000371122 SPATA31D1Q6ZQQ2 1576 aa11.15□□□□□ -0.62
SMARCA1-202ENST00000371122 NME9Q86XW9 330 aa11.15□□□□□ -0.62
SMARCA1-202ENST00000371122 USHBP1Q8N6Y0 703 aa11.15□□□□□ -0.62
SMARCA1-202ENST00000371122 SMARCA5O60264 1052 aaPredicted RBP11.14□□□□□ -0.63
SMARCA1-202ENST00000371122 ATF7IPQ6VMQ6 1270 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms