RNA–Protein interactions for RNA: ENST00000368021.7

USF1-203, Transcript of upstream transcription factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USF1, Length 1,807 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-203ENST00000368021 PMFBP1Q8TBY8 1022 aa16.29■□□□□ 0.2
USF1-203ENST00000368021 PPIP5K1Q6PFW1 1433 aa16.28■□□□□ 0.2
USF1-203ENST00000368021 CPSF1Q10570 1443 aaKnown RBP16.27■□□□□ 0.2
USF1-203ENST00000368021 PRR36Q9H6K5 1346 aa16.27■□□□□ 0.19
USF1-203ENST00000368021 TOPAZ1Q8N9V7 1692 aa16.27■□□□□ 0.19
USF1-203ENST00000368021 PHLPP1O60346 1717 aa16.26■□□□□ 0.19
USF1-203ENST00000368021 PHF8Q9UPP1 1060 aa16.26■□□□□ 0.19
USF1-203ENST00000368021 FMN2Q9NZ56 1722 aa16.26■□□□□ 0.19
USF1-203ENST00000368021 PPP2R1AP30153 589 aa16.25■□□□□ 0.19
USF1-203ENST00000368021 PNISRQ8TF01 805 aaKnown RBP16.25■□□□□ 0.19
USF1-203ENST00000368021 ANP32EQ9BTT0 268 aa16.25■□□□□ 0.19
USF1-203ENST00000368021 RGPD8O14715 1765 aaPredicted RBP16.25■□□□□ 0.19
USF1-203ENST00000368021 ANKARQ7Z5J8 1434 aa16.24■□□□□ 0.19
USF1-203ENST00000368021 ITSN1Q15811 1721 aa16.23■□□□□ 0.19
USF1-203ENST00000368021 PLEKHG3A1L390 1219 aa16.23■□□□□ 0.19
USF1-203ENST00000368021 FAM9BQ8IZU0 186 aa16.23■□□□□ 0.19
USF1-203ENST00000368021 ZNF692Q9BU19 519 aaPredicted RBP16.23■□□□□ 0.19
USF1-203ENST00000368021 NPHP3Q7Z494 1330 aa16.23■□□□□ 0.19
USF1-203ENST00000368021 EDC4Q6P2E9 1401 aaKnown RBP16.23■□□□□ 0.19
USF1-203ENST00000368021 AKAP12Q02952 1782 aa16.22■□□□□ 0.19
USF1-203ENST00000368021 LRRC59Q96AG4 307 aaKnown RBP16.22■□□□□ 0.19
USF1-203ENST00000368021 AHDC1Q5TGY3 1603 aaPredicted RBP16.22■□□□□ 0.19
USF1-203ENST00000368021 MON2Q7Z3U7 1717 aa16.22■□□□□ 0.19
USF1-203ENST00000368021 PSME1Q06323 249 aa16.22■□□□□ 0.19
USF1-203ENST00000368021 MORC1Q86VD1 984 aa16.22■□□□□ 0.19
USF1-203ENST00000368021 COL16A1Q07092 1604 aaPredicted RBP16.21■□□□□ 0.19
USF1-203ENST00000368021 ANKRD26Q9UPS8 1709 aa16.21■□□□□ 0.19
USF1-203ENST00000368021 SOS2Q07890 1332 aaPredicted RBP16.21■□□□□ 0.19
USF1-203ENST00000368021 PLEKHG5O94827 1062 aa16.21■□□□□ 0.19
USF1-203ENST00000368021 PRKCSHP14314 528 aaPredicted RBP16.21■□□□□ 0.19
USF1-203ENST00000368021 NGDNQ8NEJ9 315 aaKnown RBP16.21■□□□□ 0.19
USF1-203ENST00000368021 JCADQ9P266 1359 aa16.2■□□□□ 0.18
USF1-203ENST00000368021 KRT28Q7Z3Y7 464 aa16.2■□□□□ 0.18
USF1-203ENST00000368021 KIF20BQ96Q89 1820 aa16.2■□□□□ 0.18
USF1-203ENST00000368021 INSRP06213 1382 aa16.2■□□□□ 0.18
USF1-203ENST00000368021 NUTM2BA6NNL0 878 aaPredicted RBP16.19■□□□□ 0.18
USF1-203ENST00000368021 NUTM2EB1AL46 878 aaPredicted RBP16.19■□□□□ 0.18
USF1-203ENST00000368021 FYB1O15117 783 aa16.19■□□□□ 0.18
USF1-203ENST00000368021 NUTM2AQ8IVF1 878 aaPredicted RBP16.19■□□□□ 0.18
USF1-203ENST00000368021 NHSL1Q5SYE7 1610 aa16.19■□□□□ 0.18
USF1-203ENST00000368021 LMOD2Q6P5Q4 547 aa16.19■□□□□ 0.18
USF1-203ENST00000368021 POLR3AO14802 1390 aaPredicted RBP16.18■□□□□ 0.18
USF1-203ENST00000368021 ACEP12821 1306 aa16.17■□□□□ 0.18
USF1-203ENST00000368021 HNRNPUQ00839 825 aaKnown RBP eCLIP16.17■□□□□ 0.18
USF1-203ENST00000368021 PAK3O75914 559 aaPredicted RBP16.16■□□□□ 0.18
USF1-203ENST00000368021 NRKQ7Z2Y5 1582 aa16.16■□□□□ 0.18
USF1-203ENST00000368021 USP6P35125 1406 aa16.15■□□□□ 0.18
USF1-203ENST00000368021 GGNBP2Q9H3C7 697 aa16.15■□□□□ 0.18
USF1-203ENST00000368021 PXDNQ92626 1479 aa16.15■□□□□ 0.18
USF1-203ENST00000368021 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.14■□□□□ 0.17
USF1-203ENST00000368021 PNPLA6Q8IY17 1366 aa16.14■□□□□ 0.17
USF1-203ENST00000368021 KIF1AQ12756 1690 aa16.13■□□□□ 0.17
USF1-203ENST00000368021 SSH2Q76I76 1423 aa16.13■□□□□ 0.17
USF1-203ENST00000368021 PHF23Q9BUL5 403 aaPredicted RBP16.12■□□□□ 0.17
USF1-203ENST00000368021 SPATA31A6Q5VVP1 1343 aa16.12■□□□□ 0.17
USF1-203ENST00000368021 SPATA31A3Q5VYP0 1347 aa16.12■□□□□ 0.17
USF1-203ENST00000368021 ZBED9Q6R2W3 1325 aa16.12■□□□□ 0.17
USF1-203ENST00000368021 ADAMTS2O95450 1211 aa16.12■□□□□ 0.17
USF1-203ENST00000368021 MEX3CQ5U5Q3 659 aaKnown RBP16.12■□□□□ 0.17
USF1-203ENST00000368021 TTC21BQ7Z4L5 1316 aa16.11■□□□□ 0.17
USF1-203ENST00000368021 TNNT2P45379 298 aaPredicted RBP16.11■□□□□ 0.17
USF1-203ENST00000368021 CABLES1Q8TDN4 633 aa16.11■□□□□ 0.17
USF1-203ENST00000368021 TTC21AQ8NDW8 1320 aa16.11■□□□□ 0.17
USF1-203ENST00000368021 MED1Q15648 1581 aaPredicted RBP16.11■□□□□ 0.17
USF1-203ENST00000368021 BLMP54132 1417 aaPredicted RBP16.1■□□□□ 0.17
USF1-203ENST00000368021 MTHFSP49914 203 aa16.1■□□□□ 0.17
USF1-203ENST00000368021 WDR43Q15061 677 aaKnown RBP eCLIP16.1■□□□□ 0.17
USF1-203ENST00000368021 NUTM2GQ5VZR2 741 aa16.1■□□□□ 0.17
USF1-203ENST00000368021 NME9Q86XW9 330 aa16.09■□□□□ 0.17
USF1-203ENST00000368021 LRP6O75581 1613 aa16.09■□□□□ 0.17
USF1-203ENST00000368021 COG3Q96JB2 828 aa16.08■□□□□ 0.17
USF1-203ENST00000368021 CFAP53Q96M91 514 aa16.08■□□□□ 0.17
USF1-203ENST00000368021 SHPRHQ149N8 1683 aa16.08■□□□□ 0.16
USF1-203ENST00000368021 AATKQ6ZMQ8 1374 aa16.08■□□□□ 0.16
USF1-203ENST00000368021 TNS3Q68CZ2 1445 aa16.08■□□□□ 0.16
USF1-203ENST00000368021 HAP1P54257 671 aaPredicted RBP16.08■□□□□ 0.16
USF1-203ENST00000368021 ADAMTS8Q9UP79 889 aa16.08■□□□□ 0.16
USF1-203ENST00000368021 C8orf37Q96NL8 207 aa16.07■□□□□ 0.16
USF1-203ENST00000368021 SBNO1A3KN83 1393 aa16.07■□□□□ 0.16
USF1-203ENST00000368021 OVOS2A0A0J9YW53 1432 aa16.06■□□□□ 0.16
USF1-203ENST00000368021 OVOS2Q6IE36 1432 aa16.06■□□□□ 0.16
USF1-203ENST00000368021 ABTB2Q8N961 1025 aa16.05■□□□□ 0.16
USF1-203ENST00000368021 SMG6Q86US8 1419 aaKnown RBP16.05■□□□□ 0.16
USF1-203ENST00000368021 USP31Q70CQ4 1352 aa16.05■□□□□ 0.16
USF1-203ENST00000368021 RGS17Q9UGC6 210 aaPredicted RBP16.04■□□□□ 0.16
USF1-203ENST00000368021 ARHGEF10O15013 1369 aa16.03■□□□□ 0.16
USF1-203ENST00000368021 COL3A1P02461 1466 aaPredicted RBP16.03■□□□□ 0.16
USF1-203ENST00000368021 MAP2P11137 1827 aaKnown RBP16.03■□□□□ 0.16
USF1-203ENST00000368021 USP54Q70EL1 1684 aa16.03■□□□□ 0.16
USF1-203ENST00000368021 NGLY1Q96IV0 654 aa16.03■□□□□ 0.16
USF1-203ENST00000368021 POLKQ9UBT6 870 aa16.03■□□□□ 0.16
USF1-203ENST00000368021 ZRANB1Q9UGI0 708 aa16.03■□□□□ 0.16
USF1-203ENST00000368021 PIK3C2AO00443 1686 aa16.02■□□□□ 0.16
USF1-203ENST00000368021 TRPM3Q9HCF6 1732 aaPredicted RBP16.02■□□□□ 0.15
USF1-203ENST00000368021 CDK12Q9NYV4 1490 aaPredicted RBP16.01■□□□□ 0.15
USF1-203ENST00000368021 NLRP6P59044 892 aa16■□□□□ 0.15
USF1-203ENST00000368021 AFF2P51816 1311 aa15.99■□□□□ 0.15
USF1-203ENST00000368021 NUDCQ9Y266 331 aa15.99■□□□□ 0.15
USF1-203ENST00000368021 COL22A1Q8NFW1 1626 aaPredicted RBP15.99■□□□□ 0.15
USF1-203ENST00000368021 POTEAQ6S8J7 498 aa15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms