RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 FAM50BQ9Y247 325 aa4.99□□□□□ -1.61
USH2A-202ENST00000366942 HSP90AA2PQ14568 343 aaPredicted RBP4.99□□□□□ -1.61
USH2A-202ENST00000366942 DDX46Q7L014 1031 aaKnown RBP4.99□□□□□ -1.61
USH2A-202ENST00000366942 GAS2L2Q8NHY3 880 aa4.99□□□□□ -1.61
USH2A-202ENST00000366942 CCDC7Q96M83 1385 aa4.99□□□□□ -1.61
USH2A-202ENST00000366942 XBP1P17861 261 aa4.99□□□□□ -1.61
USH2A-202ENST00000366942 BCS1LQ9Y276 419 aa4.99□□□□□ -1.61
USH2A-202ENST00000366942 FAM135AQ9P2D6 1515 aa4.99□□□□□ -1.61
USH2A-202ENST00000366942 HSPA2P54652 639 aa4.99□□□□□ -1.61
USH2A-202ENST00000366942 HS1BP3Q53T59 392 aa4.99□□□□□ -1.61
USH2A-202ENST00000366942 RIC3Q7Z5B4 369 aa4.99□□□□□ -1.61
USH2A-202ENST00000366942 NGEFQ8N5V2 710 aa4.99□□□□□ -1.61
USH2A-202ENST00000366942 NBPF15Q8N660 670 aa4.99□□□□□ -1.61
USH2A-202ENST00000366942 NOC3LQ8WTT2 800 aaKnown RBP4.99□□□□□ -1.61
USH2A-202ENST00000366942 C19orf44Q9H6X5 657 aa4.99□□□□□ -1.61
USH2A-202ENST00000366942 YEATS2Q9ULM3 1422 aa4.98□□□□□ -1.61
USH2A-202ENST00000366942 APPP05067 770 aa4.98□□□□□ -1.61
USH2A-202ENST00000366942 ERC1Q8IUD2 1116 aa4.98□□□□□ -1.61
USH2A-202ENST00000366942 GCC1Q96CN9 775 aa4.98□□□□□ -1.61
USH2A-202ENST00000366942 SYNJ2O15056 1496 aa4.98□□□□□ -1.61
USH2A-202ENST00000366942 GRIN2BQ13224 1484 aa4.98□□□□□ -1.61
USH2A-202ENST00000366942 CD109Q6YHK3 1445 aa4.98□□□□□ -1.61
USH2A-202ENST00000366942 MFAP1P55081 439 aaKnown RBP4.98□□□□□ -1.61
USH2A-202ENST00000366942 BRMS1Q9HCU9 246 aa4.98□□□□□ -1.61
USH2A-202ENST00000366942 RTCBQ9Y3I0 505 aaKnown RBP4.98□□□□□ -1.61
USH2A-202ENST00000366942 SULF1Q8IWU6 871 aa4.98□□□□□ -1.61
USH2A-202ENST00000366942 PRG4Q92954 1404 aaPredicted RBP4.98□□□□□ -1.61
USH2A-202ENST00000366942 H0YIN7 160 aa4.98□□□□□ -1.61
USH2A-202ENST00000366942 PRC1O43663 620 aa4.98□□□□□ -1.61
USH2A-202ENST00000366942 IBSPP21815 317 aaPredicted RBP4.98□□□□□ -1.61
USH2A-202ENST00000366942 CHMP4BP1P59074 171 aa4.98□□□□□ -1.61
USH2A-202ENST00000366942 TRIM29Q14134 588 aa4.98□□□□□ -1.61
USH2A-202ENST00000366942 RALBP1Q15311 655 aa4.98□□□□□ -1.61
USH2A-202ENST00000366942 TRIM22Q8IYM9 498 aa4.98□□□□□ -1.61
USH2A-202ENST00000366942 CUL5Q93034 780 aa4.98□□□□□ -1.61
USH2A-202ENST00000366942 DCPSQ96C86 337 aaKnown RBP4.98□□□□□ -1.61
USH2A-202ENST00000366942 LRRFIP2Q9Y608 721 aaKnown RBP4.98□□□□□ -1.61
USH2A-202ENST00000366942 SCAPERQ9BY12 1400 aa4.98□□□□□ -1.61
USH2A-202ENST00000366942 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP4.98□□□□□ -1.61
USH2A-202ENST00000366942 FAM177BA6PVY3 158 aa4.98□□□□□ -1.61
USH2A-202ENST00000366942 RPRD2Q5VT52 1461 aaKnown RBP4.97□□□□□ -1.61
USH2A-202ENST00000366942 ATP2B2Q01814 1243 aa4.97□□□□□ -1.61
USH2A-202ENST00000366942 HLA-DOAP06340 250 aa4.97□□□□□ -1.61
USH2A-202ENST00000366942 CT47A1Q5JQC4 288 aaPredicted RBP4.97□□□□□ -1.61
USH2A-202ENST00000366942 NBPF11Q86T75 865 aa4.97□□□□□ -1.61
USH2A-202ENST00000366942 NIM1KQ8IY84 436 aa4.97□□□□□ -1.61
USH2A-202ENST00000366942 UBXN2AP68543 259 aa4.97□□□□□ -1.61
USH2A-202ENST00000366942 SLC26A8Q96RN1 970 aa4.97□□□□□ -1.61
USH2A-202ENST00000366942 NYXQ9GZU5 481 aa4.97□□□□□ -1.61
USH2A-202ENST00000366942 GJA3Q9Y6H8 435 aa4.97□□□□□ -1.61
USH2A-202ENST00000366942 C2orf69Q8N8R5 385 aa4.97□□□□□ -1.61
USH2A-202ENST00000366942 CPLX3Q8WVH0 158 aa4.97□□□□□ -1.61
USH2A-202ENST00000366942 NACAP1Q9BZK3 213 aa4.97□□□□□ -1.61
USH2A-202ENST00000366942 CNNM1Q9NRU3 951 aa4.97□□□□□ -1.61
USH2A-202ENST00000366942 ANKIB1Q9P2G1 1089 aa4.97□□□□□ -1.61
USH2A-202ENST00000366942 CGNL1Q0VF96 1302 aa4.97□□□□□ -1.61
USH2A-202ENST00000366942 PABPN1LA6NDY0 278 aaKnown RBP4.96□□□□□ -1.61
USH2A-202ENST00000366942 SRGAP2BP0DMP2 458 aa4.96□□□□□ -1.61
USH2A-202ENST00000366942 G3BP1Q13283 466 aaKnown RBP eCLIP4.96□□□□□ -1.61
USH2A-202ENST00000366942 PPP1R42Q7Z4L9 355 aa4.96□□□□□ -1.61
USH2A-202ENST00000366942 CSADQ9Y600 493 aa4.96□□□□□ -1.61
USH2A-202ENST00000366942 PPP1R12BO60237 982 aaPredicted RBP4.96□□□□□ -1.61
USH2A-202ENST00000366942 TNFAIP1Q13829 316 aa4.96□□□□□ -1.61
USH2A-202ENST00000366942 CAVIN4Q5BKX8 364 aa4.96□□□□□ -1.61
USH2A-202ENST00000366942 ZNF526Q8TF50 670 aaPredicted RBP4.96□□□□□ -1.61
USH2A-202ENST00000366942 SUPT16HQ9Y5B9 1047 aaKnown RBP4.96□□□□□ -1.61
USH2A-202ENST00000366942 KIF28PB7ZC32 967 aa4.96□□□□□ -1.62
USH2A-202ENST00000366942 WASHC4Q2M389 1173 aa4.96□□□□□ -1.62
USH2A-202ENST00000366942 HINFPQ9BQA5 517 aa4.96□□□□□ -1.62
USH2A-202ENST00000366942 PHF8Q9UPP1 1060 aa4.96□□□□□ -1.62
USH2A-202ENST00000366942 TRAK1Q9UPV9 953 aa4.96□□□□□ -1.62
USH2A-202ENST00000366942 CNTLNQ9NXG0 1405 aa4.96□□□□□ -1.62
USH2A-202ENST00000366942 TPRNQ4KMQ1 711 aa4.96□□□□□ -1.62
USH2A-202ENST00000366942 ARMC9Q7Z3E5 817 aa4.96□□□□□ -1.62
USH2A-202ENST00000366942 SH2D4AQ9H788 454 aa4.96□□□□□ -1.62
USH2A-202ENST00000366942 WASLO00401 505 aaPredicted RBP4.95□□□□□ -1.62
USH2A-202ENST00000366942 CCDC129Q6ZRS4 1044 aa4.95□□□□□ -1.62
USH2A-202ENST00000366942 CDC5LQ99459 802 aaKnown RBP4.95□□□□□ -1.62
USH2A-202ENST00000366942 ZC3H12CQ9C0D7 883 aaKnown RBP4.95□□□□□ -1.62
USH2A-202ENST00000366942 MBIPQ9NS73 344 aa4.95□□□□□ -1.62
USH2A-202ENST00000366942 GTPBP6O43824 516 aaPredicted RBP4.95□□□□□ -1.62
USH2A-202ENST00000366942 TMOD4Q9NZQ9 345 aa4.95□□□□□ -1.62
USH2A-202ENST00000366942 NR1I2O75469 434 aa4.95□□□□□ -1.62
USH2A-202ENST00000366942 FMNL1O95466 1100 aaPredicted RBP4.95□□□□□ -1.62
USH2A-202ENST00000366942 TSR1Q2NL82 804 aaKnown RBP4.95□□□□□ -1.62
USH2A-202ENST00000366942 ZSCAN25Q6NSZ9 544 aa4.95□□□□□ -1.62
USH2A-202ENST00000366942 CDC37L1Q7L3B6 337 aa4.95□□□□□ -1.62
USH2A-202ENST00000366942 KRT28Q7Z3Y7 464 aa4.95□□□□□ -1.62
USH2A-202ENST00000366942 PICK1Q9NRD5 415 aa4.95□□□□□ -1.62
USH2A-202ENST00000366942 ATAD2Q6PL18 1390 aa4.95□□□□□ -1.62
USH2A-202ENST00000366942 FANCAO15360 1455 aa4.95□□□□□ -1.62
USH2A-202ENST00000366942 SAFBQ15424 915 aaKnown RBP eCLIP4.95□□□□□ -1.62
USH2A-202ENST00000366942 SPTY2D1Q68D10 685 aaPredicted RBP4.95□□□□□ -1.62
USH2A-202ENST00000366942 HACE1Q8IYU2 909 aa4.95□□□□□ -1.62
USH2A-202ENST00000366942 SECISBP2LQ93073 1101 aaKnown RBP4.95□□□□□ -1.62
USH2A-202ENST00000366942 CNKSR1Q969H4 720 aa4.95□□□□□ -1.62
USH2A-202ENST00000366942 MYO15BQ96JP2 1530 aa4.95□□□□□ -1.62
USH2A-202ENST00000366942 ZEB2O60315 1214 aa4.94□□□□□ -1.62
USH2A-202ENST00000366942 BECN1Q14457 450 aa4.94□□□□□ -1.62
USH2A-202ENST00000366942 SPOUT1Q5T280 376 aaKnown RBP4.94□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms