RNA–Protein interactions for RNA: ENST00000358181.8

CHD3-202, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CHD3, Length 7,286 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-202ENST00000358181 SMC2O95347 1197 aa11.67□□□□□ -0.54
CHD3-202ENST00000358181 CEBPZQ03701 1054 aaKnown RBP11.67□□□□□ -0.54
CHD3-202ENST00000358181 ATP6V1DQ9Y5K8 247 aa11.67□□□□□ -0.54
CHD3-202ENST00000358181 DDX58O95786 925 aaKnown RBP11.67□□□□□ -0.54
CHD3-202ENST00000358181 FAM69CQ0P6D2 419 aa11.67□□□□□ -0.54
CHD3-202ENST00000358181 RALBP1Q15311 655 aa11.67□□□□□ -0.54
CHD3-202ENST00000358181 CHMP5Q9NZZ3 219 aa11.67□□□□□ -0.54
CHD3-202ENST00000358181 FMNL2Q96PY5 1086 aa11.67□□□□□ -0.54
CHD3-202ENST00000358181 PABPN1LA6NDY0 278 aaKnown RBP11.66□□□□□ -0.54
CHD3-202ENST00000358181 SLC3A2P08195 630 aaKnown RBP11.66□□□□□ -0.54
CHD3-202ENST00000358181 DEF6Q9H4E7 631 aa11.66□□□□□ -0.54
CHD3-202ENST00000358181 FAM13BQ9NYF5 915 aa11.66□□□□□ -0.54
CHD3-202ENST00000358181 C16orf71Q8IYS4 520 aaPredicted RBP11.66□□□□□ -0.54
CHD3-202ENST00000358181 TAF3Q5VWG9 929 aa11.66□□□□□ -0.54
CHD3-202ENST00000358181 SART3Q15020 963 aaKnown RBP11.66□□□□□ -0.54
CHD3-202ENST00000358181 CNNM1Q9NRU3 951 aa11.65□□□□□ -0.54
CHD3-202ENST00000358181 ZNF644Q9H582 1327 aaPredicted RBP11.65□□□□□ -0.54
CHD3-202ENST00000358181 UQCRHLA0A096LP55 91 aa11.65□□□□□ -0.54
CHD3-202ENST00000358181 GOLGA6L10A0A0M3HER8 536 aa11.65□□□□□ -0.54
CHD3-202ENST00000358181 GOLGA6L10A6NI86 522 aa11.65□□□□□ -0.54
CHD3-202ENST00000358181 UQCRHP07919 91 aa11.65□□□□□ -0.54
CHD3-202ENST00000358181 CCER2I3L3R5 266 aa11.65□□□□□ -0.54
CHD3-202ENST00000358181 FMN1Q68DA7 1419 aa11.65□□□□□ -0.54
CHD3-202ENST00000358181 TTC39AQ5SRH9 613 aa11.65□□□□□ -0.55
CHD3-202ENST00000358181 CCDC73Q6ZRK6 1079 aa11.64□□□□□ -0.55
CHD3-202ENST00000358181 ERC1Q8IUD2 1116 aa11.64□□□□□ -0.55
CHD3-202ENST00000358181 CT47B1P0C2W7 299 aaPredicted RBP11.64□□□□□ -0.55
CHD3-202ENST00000358181 FAM161AQ3B820 660 aa11.64□□□□□ -0.55
CHD3-202ENST00000358181 TMEM132EQ6IEE7 984 aa11.64□□□□□ -0.55
CHD3-202ENST00000358181 RGS22Q8NE09 1264 aa11.64□□□□□ -0.55
CHD3-202ENST00000358181 RAPGEF4Q8WZA2 1011 aa11.64□□□□□ -0.55
CHD3-202ENST00000358181 SMC3Q9UQE7 1217 aa11.64□□□□□ -0.55
CHD3-202ENST00000358181 FKBP5Q13451 457 aaPredicted RBP11.64□□□□□ -0.55
CHD3-202ENST00000358181 RNF20Q5VTR2 975 aa11.64□□□□□ -0.55
CHD3-202ENST00000358181 ARL1P40616 181 aaPredicted RBP11.63□□□□□ -0.55
CHD3-202ENST00000358181 COG6Q9Y2V7 657 aa11.63□□□□□ -0.55
CHD3-202ENST00000358181 NUP133Q8WUM0 1156 aa11.63□□□□□ -0.55
CHD3-202ENST00000358181 TBC1D2BQ9UPU7 963 aa11.63□□□□□ -0.55
CHD3-202ENST00000358181 ARGLU1Q9NWB6 273 aaPredicted RBP11.63□□□□□ -0.55
CHD3-202ENST00000358181 SMC1AQ14683 1233 aaKnown RBP11.62□□□□□ -0.55
CHD3-202ENST00000358181 TXLNAP40222 546 aa11.62□□□□□ -0.55
CHD3-202ENST00000358181 MAPK8IP2Q13387 824 aaPredicted RBP11.62□□□□□ -0.55
CHD3-202ENST00000358181 ZWINTO95229 277 aa11.62□□□□□ -0.55
CHD3-202ENST00000358181 CABP2Q9NPB3 220 aa11.62□□□□□ -0.55
CHD3-202ENST00000358181 APAF1O14727 1248 aa11.61□□□□□ -0.55
CHD3-202ENST00000358181 EXOC6Q8TAG9 804 aa11.61□□□□□ -0.55
CHD3-202ENST00000358181 CCDC113Q9H0I3 377 aa11.61□□□□□ -0.55
CHD3-202ENST00000358181 DDX54Q8TDD1 881 aaKnown RBP11.61□□□□□ -0.55
CHD3-202ENST00000358181 CCDC144AA2RUR9 1427 aa11.61□□□□□ -0.55
CHD3-202ENST00000358181 CGNL1Q0VF96 1302 aa11.61□□□□□ -0.55
CHD3-202ENST00000358181 DDX11L8A8MPP1 907 aa11.61□□□□□ -0.55
CHD3-202ENST00000358181 STAMBPO95630 424 aa11.61□□□□□ -0.55
CHD3-202ENST00000358181 SMARCE1Q969G3 411 aa11.61□□□□□ -0.55
CHD3-202ENST00000358181 FAM177A1Q8N128 213 aaPredicted RBP11.6□□□□□ -0.55
CHD3-202ENST00000358181 SLTMQ9NWH9 1034 aaKnown RBP eCLIP11.6□□□□□ -0.55
CHD3-202ENST00000358181 UBE4AQ14139 1066 aa11.6□□□□□ -0.55
CHD3-202ENST00000358181 CIZ1Q9ULV3 898 aaPredicted RBP11.6□□□□□ -0.55
CHD3-202ENST00000358181 CLEC11AQ9Y240 323 aa11.6□□□□□ -0.55
CHD3-202ENST00000358181 TNNT1P13805 278 aa11.6□□□□□ -0.55
CHD3-202ENST00000358181 CCDC18Q5T9S5 1454 aa11.6□□□□□ -0.55
CHD3-202ENST00000358181 SOGA3Q5TF21 947 aa11.6□□□□□ -0.55
CHD3-202ENST00000358181 DYDC1Q8WWB3 177 aa11.6□□□□□ -0.55
CHD3-202ENST00000358181 SSX2IPQ9Y2D8 614 aa11.6□□□□□ -0.55
CHD3-202ENST00000358181 PPP4R3AQ6IN85 833 aa11.59□□□□□ -0.55
CHD3-202ENST00000358181 WWC3Q9ULE0 1092 aa11.59□□□□□ -0.55
CHD3-202ENST00000358181 NFKBIBQ15653 356 aa11.59□□□□□ -0.55
CHD3-202ENST00000358181 FILIP1LQ4L180 1135 aa11.59□□□□□ -0.55
CHD3-202ENST00000358181 CTNNBL1Q8WYA6 563 aaPredicted RBP11.59□□□□□ -0.55
CHD3-202ENST00000358181 SDF4Q9BRK5 362 aa11.59□□□□□ -0.55
CHD3-202ENST00000358181 EP400NLQ6ZTU2 488 aa11.59□□□□□ -0.55
CHD3-202ENST00000358181 TSPYL4Q9UJ04 414 aa11.58□□□□□ -0.55
CHD3-202ENST00000358181 TMCO5BA8MYB1 307 aa11.58□□□□□ -0.56
CHD3-202ENST00000358181 GGNBP2Q9H3C7 697 aa11.58□□□□□ -0.56
CHD3-202ENST00000358181 ATXN8OSP0DMR3 200 aa11.58□□□□□ -0.56
CHD3-202ENST00000358181 CCDC91Q7Z6B0 441 aa11.58□□□□□ -0.56
CHD3-202ENST00000358181 RIPK4P57078 832 aa11.58□□□□□ -0.56
CHD3-202ENST00000358181 OSCARQ8IYS5 282 aa11.58□□□□□ -0.56
CHD3-202ENST00000358181 RAD54L2Q9Y4B4 1467 aa11.58□□□□□ -0.56
CHD3-202ENST00000358181 STK3Q13188 491 aa11.57□□□□□ -0.56
CHD3-202ENST00000358181 NLRP13Q86W25 1043 aa11.57□□□□□ -0.56
CHD3-202ENST00000358181 ERCC4Q92889 916 aaPredicted RBP11.57□□□□□ -0.56
CHD3-202ENST00000358181 PTPRGP23470 1445 aa11.57□□□□□ -0.56
CHD3-202ENST00000358181 SH3BP5O60239 455 aa11.57□□□□□ -0.56
CHD3-202ENST00000358181 FERMT2Q96AC1 680 aa11.57□□□□□ -0.56
CHD3-202ENST00000358181 FSD1Q9BTV5 496 aa11.57□□□□□ -0.56
CHD3-202ENST00000358181 MACROD2A1Z1Q3 448 aa11.57□□□□□ -0.56
CHD3-202ENST00000358181 EPB41L2O43491 1005 aaKnown RBP11.57□□□□□ -0.56
CHD3-202ENST00000358181 GOPCQ9HD26 462 aa11.57□□□□□ -0.56
CHD3-202ENST00000358181 DNAI2Q9GZS0 605 aa11.57□□□□□ -0.56
CHD3-202ENST00000358181 UBA5Q9GZZ9 404 aa11.57□□□□□ -0.56
CHD3-202ENST00000358181 EVC2Q86UK5 1308 aa11.57□□□□□ -0.56
CHD3-202ENST00000358181 NOP2P46087 812 aaKnown RBP11.56□□□□□ -0.56
CHD3-202ENST00000358181 APBB1IPQ7Z5R6 666 aaPredicted RBP11.56□□□□□ -0.56
CHD3-202ENST00000358181 CADPSQ9ULU8 1353 aa11.56□□□□□ -0.56
CHD3-202ENST00000358181 NAT10Q9H0A0 1025 aaKnown RBP11.56□□□□□ -0.56
CHD3-202ENST00000358181 ZNHIT6Q9NWK9 470 aaKnown RBP11.56□□□□□ -0.56
CHD3-202ENST00000358181 GNL3LQ9NVN8 582 aaKnown RBP11.56□□□□□ -0.56
CHD3-202ENST00000358181 LRSAM1Q6UWE0 723 aa11.56□□□□□ -0.56
CHD3-202ENST00000358181 CCDC69A6NI79 296 aa11.55□□□□□ -0.56
CHD3-202ENST00000358181 BIN2Q9UBW5 565 aaPredicted RBP11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms