RNA–Protein interactions for RNA: ENST00000343575.10

CXCL12-201, Transcript of C-X-C motif chemokine ligand 12, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CXCL12, Length 1,857 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12-201ENST00000343575 PHF8Q9UPP1 1060 aa19.86■□□□□ 0.77
CXCL12-201ENST00000343575 C1orf167Q5SNV9 1468 aa19.86■□□□□ 0.77
CXCL12-201ENST00000343575 KIF20BQ96Q89 1820 aa19.85■□□□□ 0.77
CXCL12-201ENST00000343575 MST1RQ04912 1400 aa19.85■□□□□ 0.77
CXCL12-201ENST00000343575 NME9Q86XW9 330 aa19.85■□□□□ 0.77
CXCL12-201ENST00000343575 ZRANB1Q9UGI0 708 aa19.85■□□□□ 0.77
CXCL12-201ENST00000343575 ANKRD26Q9UPS8 1709 aa19.85■□□□□ 0.77
CXCL12-201ENST00000343575 TTC21BQ7Z4L5 1316 aa19.85■□□□□ 0.77
CXCL12-201ENST00000343575 ESCO1Q5FWF5 840 aa19.84■□□□□ 0.77
CXCL12-201ENST00000343575 NGDNQ8NEJ9 315 aaKnown RBP19.84■□□□□ 0.77
CXCL12-201ENST00000343575 PNISRQ8TF01 805 aaKnown RBP19.84■□□□□ 0.77
CXCL12-201ENST00000343575 SUPT16HQ9Y5B9 1047 aaKnown RBP19.83■□□□□ 0.76
CXCL12-201ENST00000343575 ATF3P18847 181 aa19.82■□□□□ 0.76
CXCL12-201ENST00000343575 TNNT2P45379 298 aaPredicted RBP19.82■□□□□ 0.76
CXCL12-201ENST00000343575 MSH6P52701 1360 aa19.82■□□□□ 0.76
CXCL12-201ENST00000343575 LTBP4Q8N2S1 1624 aa19.8■□□□□ 0.76
CXCL12-201ENST00000343575 CADPS2Q86UW7 1296 aa19.8■□□□□ 0.76
CXCL12-201ENST00000343575 FAM9BQ8IZU0 186 aa19.79■□□□□ 0.76
CXCL12-201ENST00000343575 FBLN1P23142 703 aa19.78■□□□□ 0.76
CXCL12-201ENST00000343575 OVOS2A0A0J9YW53 1432 aa19.77■□□□□ 0.76
CXCL12-201ENST00000343575 FOXO3O43524 673 aa19.77■□□□□ 0.76
CXCL12-201ENST00000343575 OVOS2Q6IE36 1432 aa19.77■□□□□ 0.76
CXCL12-201ENST00000343575 TTC21AQ8NDW8 1320 aa19.77■□□□□ 0.76
CXCL12-201ENST00000343575 PIK3C2AO00443 1686 aa19.76■□□□□ 0.75
CXCL12-201ENST00000343575 MTHFSP49914 203 aa19.75■□□□□ 0.75
CXCL12-201ENST00000343575 KIF1AQ12756 1690 aa19.74■□□□□ 0.75
CXCL12-201ENST00000343575 USP31Q70CQ4 1352 aa19.74■□□□□ 0.75
CXCL12-201ENST00000343575 COG3Q96JB2 828 aa19.73■□□□□ 0.75
CXCL12-201ENST00000343575 MARF1Q9Y4F3 1742 aaKnown RBP19.72■□□□□ 0.75
CXCL12-201ENST00000343575 XPCQ01831 940 aaPredicted RBP19.72■□□□□ 0.75
CXCL12-201ENST00000343575 PSME1Q06323 249 aa19.72■□□□□ 0.75
CXCL12-201ENST00000343575 AEBP2Q6ZN18 517 aaPredicted RBP19.72■□□□□ 0.75
CXCL12-201ENST00000343575 SLAIN2Q9P270 581 aa19.72■□□□□ 0.75
CXCL12-201ENST00000343575 DDX17Q92841 729 aaKnown RBP19.71■□□□□ 0.75
CXCL12-201ENST00000343575 POLKQ9UBT6 870 aa19.71■□□□□ 0.75
CXCL12-201ENST00000343575 TRPM3Q9HCF6 1732 aaPredicted RBP19.71■□□□□ 0.75
CXCL12-201ENST00000343575 AATKQ6ZMQ8 1374 aa19.7■□□□□ 0.74
CXCL12-201ENST00000343575 MAP2P11137 1827 aaKnown RBP19.7■□□□□ 0.74
CXCL12-201ENST00000343575 BRINP3Q76B58 766 aa19.7■□□□□ 0.74
CXCL12-201ENST00000343575 USP54Q70EL1 1684 aa19.69■□□□□ 0.74
CXCL12-201ENST00000343575 PAK3O75914 559 aaPredicted RBP19.69■□□□□ 0.74
CXCL12-201ENST00000343575 KRT28Q7Z3Y7 464 aa19.69■□□□□ 0.74
CXCL12-201ENST00000343575 PNPLA6Q8IY17 1366 aa19.69■□□□□ 0.74
CXCL12-201ENST00000343575 COL3A1P02461 1466 aaPredicted RBP19.68■□□□□ 0.74
CXCL12-201ENST00000343575 NUTM2GQ5VZR2 741 aa19.68■□□□□ 0.74
CXCL12-201ENST00000343575 ABTB2Q8N961 1025 aa19.68■□□□□ 0.74
CXCL12-201ENST00000343575 SHPRHQ149N8 1683 aa19.67■□□□□ 0.74
CXCL12-201ENST00000343575 ADAMTS8Q9UP79 889 aa19.67■□□□□ 0.74
CXCL12-201ENST00000343575 EMILIN1Q9Y6C2 1016 aa19.67■□□□□ 0.74
CXCL12-201ENST00000343575 SMG6Q86US8 1419 aaKnown RBP19.67■□□□□ 0.74
CXCL12-201ENST00000343575 NLRP6P59044 892 aa19.67■□□□□ 0.74
CXCL12-201ENST00000343575 RRS1Q15050 365 aaKnown RBP19.67■□□□□ 0.74
CXCL12-201ENST00000343575 INSRP06213 1382 aa19.65■□□□□ 0.74
CXCL12-201ENST00000343575 PXDNQ92626 1479 aa19.65■□□□□ 0.74
CXCL12-201ENST00000343575 HNRNPUQ00839 825 aaKnown RBP eCLIP19.64■□□□□ 0.73
CXCL12-201ENST00000343575 TSHZ2Q9NRE2 1034 aa19.64■□□□□ 0.73
CXCL12-201ENST00000343575 NPHP3Q7Z494 1330 aa19.64■□□□□ 0.73
CXCL12-201ENST00000343575 ALS2Q96Q42 1657 aa19.63■□□□□ 0.73
CXCL12-201ENST00000343575 ANP32EQ9BTT0 268 aa19.62■□□□□ 0.73
CXCL12-201ENST00000343575 BLMP54132 1417 aaPredicted RBP19.62■□□□□ 0.73
CXCL12-201ENST00000343575 PEAK1Q9H792 1746 aa19.61■□□□□ 0.73
CXCL12-201ENST00000343575 CFAP53Q96M91 514 aa19.61■□□□□ 0.73
CXCL12-201ENST00000343575 PPM1GO15355 546 aaPredicted RBP19.6■□□□□ 0.73
CXCL12-201ENST00000343575 SOX12O15370 315 aa19.6■□□□□ 0.73
CXCL12-201ENST00000343575 SBNO1A3KN83 1393 aa19.6■□□□□ 0.73
CXCL12-201ENST00000343575 CDK12Q9NYV4 1490 aaPredicted RBP19.6■□□□□ 0.73
CXCL12-201ENST00000343575 WDR43Q15061 677 aaKnown RBP eCLIP19.6■□□□□ 0.73
CXCL12-201ENST00000343575 MAP3K19Q56UN5 1328 aa19.6■□□□□ 0.73
CXCL12-201ENST00000343575 SOS2Q07890 1332 aaPredicted RBP19.59■□□□□ 0.73
CXCL12-201ENST00000343575 SENP3-EIF4A1A0A087X0R7 540 aa19.59■□□□□ 0.73
CXCL12-201ENST00000343575 NFAT5O94916 1531 aa19.58■□□□□ 0.72
CXCL12-201ENST00000343575 USP19O94966 1318 aa19.58■□□□□ 0.72
CXCL12-201ENST00000343575 SPATA31A3Q5VYP0 1347 aa19.57■□□□□ 0.72
CXCL12-201ENST00000343575 SLIT3O75094 1523 aa19.57■□□□□ 0.72
CXCL12-201ENST00000343575 TNS3Q68CZ2 1445 aa19.56■□□□□ 0.72
CXCL12-201ENST00000343575 NHSL1Q5SYE7 1610 aa19.56■□□□□ 0.72
CXCL12-201ENST00000343575 MED1Q15648 1581 aaPredicted RBP19.56■□□□□ 0.72
CXCL12-201ENST00000343575 DIAPH1O60610 1272 aaKnown RBP19.56■□□□□ 0.72
CXCL12-201ENST00000343575 LMOD2Q6P5Q4 547 aa19.56■□□□□ 0.72
CXCL12-201ENST00000343575 IL13P35225 146 aa19.55■□□□□ 0.72
CXCL12-201ENST00000343575 GCP02774 474 aa19.54■□□□□ 0.72
CXCL12-201ENST00000343575 HSP90AB2PQ58FF8 381 aa19.54■□□□□ 0.72
CXCL12-201ENST00000343575 ROBO1Q9Y6N7 1651 aa19.53■□□□□ 0.72
CXCL12-201ENST00000343575 ZBED9Q6R2W3 1325 aa19.53■□□□□ 0.72
CXCL12-201ENST00000343575 CCDC146Q8IYE0 955 aa19.53■□□□□ 0.72
CXCL12-201ENST00000343575 U2AF1L5P0DN76 240 aaPredicted RBP19.52■□□□□ 0.71
CXCL12-201ENST00000343575 U2AF1Q01081 240 aaKnown RBP eCLIP19.52■□□□□ 0.71
CXCL12-201ENST00000343575 CRYBG1Q9Y4K1 1723 aa19.51■□□□□ 0.71
CXCL12-201ENST00000343575 EIF4A2Q14240 407 aaKnown RBP19.51■□□□□ 0.71
CXCL12-201ENST00000343575 KCNH5Q8NCM2 988 aa19.51■□□□□ 0.71
CXCL12-201ENST00000343575 FLT4P35916 1363 aa19.51■□□□□ 0.71
CXCL12-201ENST00000343575 LTN1O94822 1766 aa19.5■□□□□ 0.71
CXCL12-201ENST00000343575 U2SURPO15042 1029 aaKnown RBP19.5■□□□□ 0.71
CXCL12-201ENST00000343575 PLEKHG5O94827 1062 aa19.5■□□□□ 0.71
CXCL12-201ENST00000343575 NUDCQ9Y266 331 aa19.5■□□□□ 0.71
CXCL12-201ENST00000343575 KIF24Q5T7B8 1368 aa19.5■□□□□ 0.71
CXCL12-201ENST00000343575 HOXC9P31274 260 aa19.5■□□□□ 0.71
CXCL12-201ENST00000343575 ARHGEF25Q86VW2 580 aa19.5■□□□□ 0.71
CXCL12-201ENST00000343575 CABLES1Q8TDN4 633 aa19.5■□□□□ 0.71
CXCL12-201ENST00000343575 AMPHP49418 695 aa19.49■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 70.3 ms