RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 COL3A1P02461 1466 aaPredicted RBP17.74■□□□□ 0.43
HMGB1-202ENST00000339872 USP6P35125 1406 aa17.74■□□□□ 0.43
HMGB1-202ENST00000339872 ANKARQ7Z5J8 1434 aa17.74■□□□□ 0.43
HMGB1-202ENST00000339872 NWD1Q149M9 1564 aa17.74■□□□□ 0.43
HMGB1-202ENST00000339872 ZRANB1Q9UGI0 708 aa17.73■□□□□ 0.43
HMGB1-202ENST00000339872 PMFBP1Q8TBY8 1022 aa17.73■□□□□ 0.43
HMGB1-202ENST00000339872 APAF1O14727 1248 aa17.72■□□□□ 0.43
HMGB1-202ENST00000339872 RBM33Q96EV2 1170 aaKnown RBP17.72■□□□□ 0.43
HMGB1-202ENST00000339872 CDCA7LQ96GN5 454 aa17.72■□□□□ 0.43
HMGB1-202ENST00000339872 COG3Q96JB2 828 aa17.72■□□□□ 0.43
HMGB1-202ENST00000339872 TTC21BQ7Z4L5 1316 aa17.71■□□□□ 0.43
HMGB1-202ENST00000339872 ADGRL3Q9HAR2 1447 aa17.71■□□□□ 0.43
HMGB1-202ENST00000339872 FBLN1P23142 703 aa17.71■□□□□ 0.43
HMGB1-202ENST00000339872 IRX6P78412 446 aaPredicted RBP17.71■□□□□ 0.43
HMGB1-202ENST00000339872 NGDNQ8NEJ9 315 aaKnown RBP17.7■□□□□ 0.42
HMGB1-202ENST00000339872 U2AF1L5P0DN76 240 aaPredicted RBP17.69■□□□□ 0.42
HMGB1-202ENST00000339872 U2AF1Q01081 240 aaKnown RBP eCLIP17.69■□□□□ 0.423e-11■■■■□ 22.7
HMGB1-202ENST00000339872 POLKQ9UBT6 870 aa17.69■□□□□ 0.42
HMGB1-202ENST00000339872 PNPLA6Q8IY17 1366 aa17.69■□□□□ 0.42
HMGB1-202ENST00000339872 PPM1GO15355 546 aaPredicted RBP17.69■□□□□ 0.42
HMGB1-202ENST00000339872 RUNDC1Q96C34 613 aa17.69■□□□□ 0.42
HMGB1-202ENST00000339872 ZNF521Q96K83 1311 aa17.68■□□□□ 0.42
HMGB1-202ENST00000339872 SSH2Q76I76 1423 aa17.68■□□□□ 0.42
HMGB1-202ENST00000339872 IQSEC2Q5JU85 1478 aa17.68■□□□□ 0.42
HMGB1-202ENST00000339872 AATKQ6ZMQ8 1374 aa17.68■□□□□ 0.42
HMGB1-202ENST00000339872 U2SURPO15042 1029 aaKnown RBP17.67■□□□□ 0.42
HMGB1-202ENST00000339872 KDM4FA0A1W2PPD8 638 aa17.67■□□□□ 0.42
HMGB1-202ENST00000339872 C14orf37Q86TY3 774 aa17.67■□□□□ 0.42
HMGB1-202ENST00000339872 OVOS2A0A0J9YW53 1432 aa17.67■□□□□ 0.42
HMGB1-202ENST00000339872 OVOS2Q6IE36 1432 aa17.67■□□□□ 0.42
HMGB1-202ENST00000339872 DIAPH1O60610 1272 aaKnown RBP17.66■□□□□ 0.42
HMGB1-202ENST00000339872 EMILIN1Q9Y6C2 1016 aa17.66■□□□□ 0.42
HMGB1-202ENST00000339872 HSPA2P54652 639 aa17.66■□□□□ 0.42
HMGB1-202ENST00000339872 CDK12Q9NYV4 1490 aaPredicted RBP17.66■□□□□ 0.42
HMGB1-202ENST00000339872 GOLGA2Q08379 1002 aa17.65■□□□□ 0.42
HMGB1-202ENST00000339872 NGEFQ8N5V2 710 aa17.65■□□□□ 0.42
HMGB1-202ENST00000339872 TTC21AQ8NDW8 1320 aa17.65■□□□□ 0.42
HMGB1-202ENST00000339872 PIK3C2AO00443 1686 aa17.64■□□□□ 0.42
HMGB1-202ENST00000339872 RRS1Q15050 365 aaKnown RBP17.64■□□□□ 0.41
HMGB1-202ENST00000339872 TCP11L2Q8N4U5 519 aa17.64■□□□□ 0.41
HMGB1-202ENST00000339872 PROSER2Q86WR7 435 aaPredicted RBP17.63■□□□□ 0.41
HMGB1-202ENST00000339872 RCAN3Q9UKA8 241 aa17.63■□□□□ 0.41
HMGB1-202ENST00000339872 RRP7AQ9Y3A4 280 aaKnown RBP17.63■□□□□ 0.41
HMGB1-202ENST00000339872 STRCP1A6NGW2 1772 aa17.62■□□□□ 0.41
HMGB1-202ENST00000339872 NEUROD2Q15784 382 aa17.62■□□□□ 0.41
HMGB1-202ENST00000339872 RNF123Q5XPI4 1314 aa17.62■□□□□ 0.41
HMGB1-202ENST00000339872 LMTK3Q96Q04 1460 aa17.62■□□□□ 0.41
HMGB1-202ENST00000339872 PHF8Q9UPP1 1060 aa17.61■□□□□ 0.41
HMGB1-202ENST00000339872 LRRC7Q96NW7 1537 aa17.6■□□□□ 0.41
HMGB1-202ENST00000339872 DUSP27Q5VZP5 1158 aa17.6■□□□□ 0.41
HMGB1-202ENST00000339872 WWC1Q8IX03 1113 aa17.6■□□□□ 0.41
HMGB1-202ENST00000339872 USP31Q70CQ4 1352 aa17.59■□□□□ 0.41
HMGB1-202ENST00000339872 SLFN5Q08AF3 891 aa17.59■□□□□ 0.41
HMGB1-202ENST00000339872 MAPK8IP3Q9UPT6 1336 aa17.58■□□□□ 0.41
HMGB1-202ENST00000339872 SOX12O15370 315 aa17.58■□□□□ 0.41
HMGB1-202ENST00000339872 ESCO1Q5FWF5 840 aa17.58■□□□□ 0.41
HMGB1-202ENST00000339872 PLEKHF1Q96S99 279 aa17.58■□□□□ 0.41
HMGB1-202ENST00000339872 PEAK1Q9H792 1746 aa17.58■□□□□ 0.4
HMGB1-202ENST00000339872 MARF1Q9Y4F3 1742 aaKnown RBP17.58■□□□□ 0.4
HMGB1-202ENST00000339872 SPINK5Q9NQ38 1064 aaPredicted RBP17.58■□□□□ 0.4
HMGB1-202ENST00000339872 DMRT2Q9Y5R5 561 aa17.58■□□□□ 0.4
HMGB1-202ENST00000339872 USP54Q70EL1 1684 aa17.57■□□□□ 0.4
HMGB1-202ENST00000339872 STRCQ7RTU9 1775 aa17.57■□□□□ 0.4
HMGB1-202ENST00000339872 ERICH6BQ5W0A0 696 aa17.57■□□□□ 0.4
HMGB1-202ENST00000339872 E9PSI1 815 aa17.56■□□□□ 0.4
HMGB1-202ENST00000339872 PAK3O75914 559 aaPredicted RBP17.56■□□□□ 0.4
HMGB1-202ENST00000339872 IL13P35225 146 aa17.56■□□□□ 0.4
HMGB1-202ENST00000339872 RRP1P56182 461 aaKnown RBP17.56■□□□□ 0.4
HMGB1-202ENST00000339872 PNNQ9H307 717 aaKnown RBP17.56■□□□□ 0.4
HMGB1-202ENST00000339872 TRMT2AQ8IZ69 625 aaKnown RBP17.55■□□□□ 0.4
HMGB1-202ENST00000339872 NLRP6P59044 892 aa17.55■□□□□ 0.4
HMGB1-202ENST00000339872 CCDC27Q2M243 656 aa17.55■□□□□ 0.4
HMGB1-202ENST00000339872 PHF23Q9BUL5 403 aaPredicted RBP17.55■□□□□ 0.4
HMGB1-202ENST00000339872 TMEM94Q12767 1356 aa17.54■□□□□ 0.4
HMGB1-202ENST00000339872 FCHSD2O94868 740 aa17.54■□□□□ 0.4
HMGB1-202ENST00000339872 NUTM2GQ5VZR2 741 aa17.54■□□□□ 0.4
HMGB1-202ENST00000339872 ABTB2Q8N961 1025 aa17.54■□□□□ 0.4
HMGB1-202ENST00000339872 RSPH6AQ9H0K4 717 aa17.54■□□□□ 0.4
HMGB1-202ENST00000339872 C19orf44Q9H6X5 657 aa17.54■□□□□ 0.4
HMGB1-202ENST00000339872 HMOX1P09601 288 aa17.53■□□□□ 0.4
HMGB1-202ENST00000339872 PRKAR2BP31323 418 aa17.53■□□□□ 0.4
HMGB1-202ENST00000339872 NCBP3Q53F19 620 aaKnown RBP17.53■□□□□ 0.4
HMGB1-202ENST00000339872 TMPOP42166 694 aaKnown RBP17.53■□□□□ 0.4
HMGB1-202ENST00000339872 ORAI2Q96SN7 254 aa17.53■□□□□ 0.4
HMGB1-202ENST00000339872 PSME1Q06323 249 aa17.52■□□□□ 0.4
HMGB1-202ENST00000339872 KIF1AQ12756 1690 aa17.52■□□□□ 0.4
HMGB1-202ENST00000339872 WDR63Q8IWG1 891 aa17.52■□□□□ 0.39
HMGB1-202ENST00000339872 MAP3K19Q56UN5 1328 aa17.51■□□□□ 0.39
HMGB1-202ENST00000339872 C1orf167Q5SNV9 1468 aa17.51■□□□□ 0.39
HMGB1-202ENST00000339872 NEFMP07197 916 aa17.51■□□□□ 0.39
HMGB1-202ENST00000339872 EIF4A2Q14240 407 aaKnown RBP17.5■□□□□ 0.39
HMGB1-202ENST00000339872 PPP4R2Q9NY27 417 aa17.5■□□□□ 0.39
HMGB1-202ENST00000339872 SBNO1A3KN83 1393 aa17.5■□□□□ 0.39
HMGB1-202ENST00000339872 HSP90AB2PQ58FF8 381 aa17.49■□□□□ 0.39
HMGB1-202ENST00000339872 FLT4P35916 1363 aa17.49■□□□□ 0.39
HMGB1-202ENST00000339872 DCCP43146 1447 aa17.49■□□□□ 0.39
HMGB1-202ENST00000339872 NCOA3Q9Y6Q9 1424 aa17.49■□□□□ 0.39
HMGB1-202ENST00000339872 ATF3P18847 181 aa17.49■□□□□ 0.39
HMGB1-202ENST00000339872 RGPD1P0DJD0 1748 aa17.49■□□□□ 0.39
HMGB1-202ENST00000339872 FOXO3O43524 673 aa17.48■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 658.3 ms