RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 ESCO1Q5FWF5 840 aa4.02□□□□□ -1.77
CSMD3-202ENST00000339701 PMFBP1Q8TBY8 1022 aa4.02□□□□□ -1.77
CSMD3-202ENST00000339701 CEP89Q96ST8 783 aa4.02□□□□□ -1.77
CSMD3-202ENST00000339701 INCENPQ9NQS7 918 aa4.01□□□□□ -1.77
CSMD3-202ENST00000339701 LRRC7Q96NW7 1537 aa4.01□□□□□ -1.77
CSMD3-202ENST00000339701 DDX11L8A8MPP1 907 aa4.01□□□□□ -1.77
CSMD3-202ENST00000339701 PLCD3Q8N3E9 789 aa4.01□□□□□ -1.77
CSMD3-202ENST00000339701 ZNF518AQ6AHZ1 1483 aa4.01□□□□□ -1.77
CSMD3-202ENST00000339701 SAMD9LQ8IVG5 1584 aa4.01□□□□□ -1.77
CSMD3-202ENST00000339701 ZMYM3Q14202 1370 aa4.01□□□□□ -1.77
CSMD3-202ENST00000339701 DPY19L2Q6NUT2 758 aa4.01□□□□□ -1.77
CSMD3-202ENST00000339701 FAM107BQ9H098 131 aa4.01□□□□□ -1.77
CSMD3-202ENST00000339701 SETBP1Q9Y6X0 1596 aa4.01□□□□□ -1.77
CSMD3-202ENST00000339701 NSD2O96028 1365 aa4.01□□□□□ -1.77
CSMD3-202ENST00000339701 RXRBP28702 533 aa4.01□□□□□ -1.77
CSMD3-202ENST00000339701 CNPY4Q8N129 248 aa4.01□□□□□ -1.77
CSMD3-202ENST00000339701 TSR1Q2NL82 804 aaKnown RBP4.01□□□□□ -1.77
CSMD3-202ENST00000339701 VIRMAQ69YN4 1812 aaKnown RBP4.01□□□□□ -1.77
CSMD3-202ENST00000339701 ANKRD20A12PQ8NF67 263 aa4.01□□□□□ -1.77
CSMD3-202ENST00000339701 CABP2Q9NPB3 220 aa4.01□□□□□ -1.77
CSMD3-202ENST00000339701 ARGLU1Q9NWB6 273 aaPredicted RBP4.01□□□□□ -1.77
CSMD3-202ENST00000339701 PIP4K2AP48426 406 aaPredicted RBP4.01□□□□□ -1.77
CSMD3-202ENST00000339701 LMOD3Q0VAK6 560 aa4.01□□□□□ -1.77
CSMD3-202ENST00000339701 HSP90AA2PQ14568 343 aaPredicted RBP4.01□□□□□ -1.77
CSMD3-202ENST00000339701 KIF7Q2M1P5 1343 aa4.01□□□□□ -1.77
CSMD3-202ENST00000339701 PRDM15P57071 1507 aaPredicted RBP4.01□□□□□ -1.77
CSMD3-202ENST00000339701 FGD1P98174 961 aa4.01□□□□□ -1.77
CSMD3-202ENST00000339701 SAFB2Q14151 953 aaKnown RBP eCLIP4.01□□□□□ -1.77
CSMD3-202ENST00000339701 LUC7LQ9NQ29 371 aaKnown RBP4.01□□□□□ -1.77
CSMD3-202ENST00000339701 RBM27Q9P2N5 1060 aaKnown RBP4□□□□□ -1.77
CSMD3-202ENST00000339701 RAB3GAP2Q9H2M9 1393 aa4□□□□□ -1.77
CSMD3-202ENST00000339701 TROQ12816 1431 aaPredicted RBP4□□□□□ -1.77
CSMD3-202ENST00000339701 VPS53Q5VIR6 699 aa4□□□□□ -1.77
CSMD3-202ENST00000339701 HSCBQ8IWL3 235 aa4□□□□□ -1.77
CSMD3-202ENST00000339701 C8orf37Q96NL8 207 aa4□□□□□ -1.77
CSMD3-202ENST00000339701 CASZ1Q86V15 1759 aa4□□□□□ -1.77
CSMD3-202ENST00000339701 IPO9Q96P70 1041 aaKnown RBP4□□□□□ -1.77
CSMD3-202ENST00000339701 ZPR1O75312 459 aa4□□□□□ -1.77
CSMD3-202ENST00000339701 TOM1L2Q6ZVM7 507 aa4□□□□□ -1.77
CSMD3-202ENST00000339701 BIN2Q9UBW5 565 aaPredicted RBP4□□□□□ -1.77
CSMD3-202ENST00000339701 FANCAO15360 1455 aa4□□□□□ -1.77
CSMD3-202ENST00000339701 NOP2P46087 812 aaKnown RBP4□□□□□ -1.77
CSMD3-202ENST00000339701 GPATCH3Q96I76 525 aa4□□□□□ -1.77
CSMD3-202ENST00000339701 CPLX2Q6PUV4 134 aaKnown RBP4□□□□□ -1.77
CSMD3-202ENST00000339701 R3HCC1Q9Y3T6 440 aaKnown RBP4□□□□□ -1.77
CSMD3-202ENST00000339701 ARHGAP5Q13017 1502 aa3.99□□□□□ -1.77
CSMD3-202ENST00000339701 NUTM2FA1L443 756 aa3.99□□□□□ -1.77
CSMD3-202ENST00000339701 GBP2P32456 591 aaPredicted RBP3.99□□□□□ -1.77
CSMD3-202ENST00000339701 KIAA1211Q6ZU35 1233 aa3.99□□□□□ -1.77
CSMD3-202ENST00000339701 CCDC191Q8NCU4 936 aa3.99□□□□□ -1.77
CSMD3-202ENST00000339701 PUS7Q96PZ0 661 aaKnown RBP3.99□□□□□ -1.77
CSMD3-202ENST00000339701 PRDM11Q9NQV5 511 aa3.99□□□□□ -1.77
CSMD3-202ENST00000339701 ZNF652Q9Y2D9 606 aa3.99□□□□□ -1.77
CSMD3-202ENST00000339701 ABCC10Q5T3U5 1492 aa3.99□□□□□ -1.77
CSMD3-202ENST00000339701 STK32BQ9NY57 414 aa3.99□□□□□ -1.77
CSMD3-202ENST00000339701 ATAD2Q6PL18 1390 aa3.99□□□□□ -1.77
CSMD3-202ENST00000339701 CCDC173Q0VFZ6 552 aa3.99□□□□□ -1.77
CSMD3-202ENST00000339701 TMED8Q6PL24 325 aaPredicted RBP3.99□□□□□ -1.77
CSMD3-202ENST00000339701 HDAC9Q9UKV0 1011 aa3.99□□□□□ -1.77
CSMD3-202ENST00000339701 HNRNPUQ00839 825 aaKnown RBP eCLIP3.99□□□□□ -1.77
CSMD3-202ENST00000339701 IFT172Q9UG01 1749 aa3.99□□□□□ -1.77
CSMD3-202ENST00000339701 FTSJ3Q8IY81 847 aaKnown RBP3.99□□□□□ -1.77
CSMD3-202ENST00000339701 ASXL2Q76L83 1435 aa3.99□□□□□ -1.77
CSMD3-202ENST00000339701 KNDC1Q76NI1 1749 aa3.98□□□□□ -1.77
CSMD3-202ENST00000339701 KIF6Q6ZMV9 814 aa3.98□□□□□ -1.77
CSMD3-202ENST00000339701 DIAPH3Q9NSV4 1193 aa3.98□□□□□ -1.77
CSMD3-202ENST00000339701 TTC37Q6PGP7 1564 aa3.98□□□□□ -1.77
CSMD3-202ENST00000339701 WDR70Q9NW82 654 aa3.98□□□□□ -1.77
CSMD3-202ENST00000339701 KIF2AO00139 706 aaPredicted RBP3.98□□□□□ -1.77
CSMD3-202ENST00000339701 ANKRD18AQ8IVF6 992 aa3.98□□□□□ -1.77
CSMD3-202ENST00000339701 USH1CQ9Y6N9 552 aa3.98□□□□□ -1.77
CSMD3-202ENST00000339701 ZNF526Q8TF50 670 aaPredicted RBP3.98□□□□□ -1.77
CSMD3-202ENST00000339701 TMOD2Q9NZR1 351 aa3.98□□□□□ -1.77
CSMD3-202ENST00000339701 PRKAG2Q9UGJ0 569 aa3.98□□□□□ -1.77
CSMD3-202ENST00000339701 LMO7Q8WWI1 1683 aa3.98□□□□□ -1.77
CSMD3-202ENST00000339701 RPGRIP1LQ68CZ1 1315 aa3.98□□□□□ -1.77
CSMD3-202ENST00000339701 CAVIN2O95810 425 aa3.98□□□□□ -1.77
CSMD3-202ENST00000339701 MCM2P49736 904 aa3.98□□□□□ -1.77
CSMD3-202ENST00000339701 MNS1Q8NEH6 495 aa3.98□□□□□ -1.77
CSMD3-202ENST00000339701 MYO1BO43795 1136 aa3.98□□□□□ -1.77
CSMD3-202ENST00000339701 RALBP1Q15311 655 aa3.98□□□□□ -1.77
CSMD3-202ENST00000339701 RRP12Q5JTH9 1297 aaKnown RBP3.98□□□□□ -1.77
CSMD3-202ENST00000339701 CCDC43Q96MW1 224 aaKnown RBP3.98□□□□□ -1.77
CSMD3-202ENST00000339701 ATP10AO60312 1499 aa3.98□□□□□ -1.77
CSMD3-202ENST00000339701 FGD6Q6ZV73 1430 aa3.98□□□□□ -1.77
CSMD3-202ENST00000339701 QRICH2Q9H0J4 1663 aa3.98□□□□□ -1.77
CSMD3-202ENST00000339701 TEFQ10587 303 aa3.98□□□□□ -1.77
CSMD3-202ENST00000339701 RAD21O60216 631 aa3.98□□□□□ -1.77
CSMD3-202ENST00000339701 CENPJQ9HC77 1338 aaPredicted RBP3.98□□□□□ -1.77
CSMD3-202ENST00000339701 KIF22Q14807 665 aa3.97□□□□□ -1.77
CSMD3-202ENST00000339701 CCDC47Q96A33 483 aaKnown RBP3.97□□□□□ -1.77
CSMD3-202ENST00000339701 LTV1Q96GA3 475 aaPredicted RBP3.97□□□□□ -1.77
CSMD3-202ENST00000339701 A6NNZ2 444 aa3.97□□□□□ -1.77
CSMD3-202ENST00000339701 TUBB4AP04350 444 aa3.97□□□□□ -1.77
CSMD3-202ENST00000339701 TRIM21P19474 475 aaKnown RBP3.97□□□□□ -1.77
CSMD3-202ENST00000339701 RABEP1Q15276 862 aa3.97□□□□□ -1.77
CSMD3-202ENST00000339701 TUBB8Q3ZCM7 444 aa3.97□□□□□ -1.77
CSMD3-202ENST00000339701 DDX12PQ92771 950 aa3.97□□□□□ -1.77
CSMD3-202ENST00000339701 TAOK2Q9UL54 1235 aa3.97□□□□□ -1.77
CSMD3-202ENST00000339701 LETM1O95202 739 aaPredicted RBP3.97□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 71.4 ms