RNA–Protein interactions for RNA: ENST00000335551.11

CSMD1-201, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 12,134 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-201ENST00000335551 TNMDQ9H2S6 317 aa7.31□□□□□ -1.24
CSMD1-201ENST00000335551 CTR9Q6PD62 1173 aa7.31□□□□□ -1.24
CSMD1-201ENST00000335551 PDIA4P13667 645 aaKnown RBP7.31□□□□□ -1.24
CSMD1-201ENST00000335551 CFAP45Q9UL16 551 aa7.31□□□□□ -1.24
CSMD1-201ENST00000335551 C9orf78Q9NZ63 289 aaPredicted RBP7.31□□□□□ -1.24
CSMD1-201ENST00000335551 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP7.31□□□□□ -1.24
CSMD1-201ENST00000335551 SART3Q15020 963 aaKnown RBP7.31□□□□□ -1.24
CSMD1-201ENST00000335551 JAKMIP3Q5VZ66 844 aa7.31□□□□□ -1.24
CSMD1-201ENST00000335551 DZIP1LQ8IYY4 767 aaKnown RBP7.31□□□□□ -1.24
CSMD1-201ENST00000335551 SSR1P43307 286 aaKnown RBP7.31□□□□□ -1.24
CSMD1-201ENST00000335551 GIGYF2Q6Y7W6 1299 aaKnown RBP7.31□□□□□ -1.24
CSMD1-201ENST00000335551 API5Q9BZZ5 524 aaKnown RBP7.3□□□□□ -1.24
CSMD1-201ENST00000335551 SEPT11Q9NVA2 429 aaKnown RBP7.3□□□□□ -1.24
CSMD1-201ENST00000335551 CSB-PGBD3P0DP91 1061 aa7.3□□□□□ -1.24
CSMD1-201ENST00000335551 IPO4Q8TEX9 1081 aaKnown RBP7.3□□□□□ -1.24
CSMD1-201ENST00000335551 LRRFIP2Q9Y608 721 aaKnown RBP7.3□□□□□ -1.24
CSMD1-201ENST00000335551 KIF18AQ8NI77 898 aa7.3□□□□□ -1.24
CSMD1-201ENST00000335551 MNAT1P51948 309 aa7.3□□□□□ -1.24
CSMD1-201ENST00000335551 CCDC175P0C221 793 aa7.3□□□□□ -1.24
CSMD1-201ENST00000335551 DESP17661 470 aa7.3□□□□□ -1.24
CSMD1-201ENST00000335551 IMMTQ16891 758 aaKnown RBP7.3□□□□□ -1.24
CSMD1-201ENST00000335551 CEP57L1Q8IYX8 460 aa7.3□□□□□ -1.24
CSMD1-201ENST00000335551 CDK5RAP3Q96JB5 506 aa7.3□□□□□ -1.24
CSMD1-201ENST00000335551 IVLP07476 585 aa7.3□□□□□ -1.24
CSMD1-201ENST00000335551 SPECC1LQ69YQ0 1117 aa7.3□□□□□ -1.24
CSMD1-201ENST00000335551 HIP1O00291 1037 aa7.29□□□□□ -1.24
CSMD1-201ENST00000335551 FILIP1Q7Z7B0 1213 aa7.29□□□□□ -1.24
CSMD1-201ENST00000335551 BCCIPQ9P287 314 aaKnown RBP eCLIP7.29□□□□□ -1.24
CSMD1-201ENST00000335551 WDR33Q9C0J8 1336 aaKnown RBP7.29□□□□□ -1.24
CSMD1-201ENST00000335551 CIZ1Q9ULV3 898 aaPredicted RBP7.29□□□□□ -1.24
CSMD1-201ENST00000335551 GCOM1H8Y6P7 765 aaPredicted RBP7.29□□□□□ -1.24
CSMD1-201ENST00000335551 MYZAPP0CAP1 466 aa7.29□□□□□ -1.24
CSMD1-201ENST00000335551 SWAP70Q9UH65 585 aa7.29□□□□□ -1.24
CSMD1-201ENST00000335551 G3BP1Q13283 466 aaKnown RBP eCLIP7.29□□□□□ -1.24
CSMD1-201ENST00000335551 ARHGAP29Q52LW3 1261 aa7.29□□□□□ -1.24
CSMD1-201ENST00000335551 FAM114A1Q8IWE2 563 aa7.29□□□□□ -1.24
CSMD1-201ENST00000335551 ANKRD18BA2A2Z9 1011 aa7.29□□□□□ -1.24
CSMD1-201ENST00000335551 DYNC1I1O14576 645 aa7.29□□□□□ -1.24
CSMD1-201ENST00000335551 CLGNO14967 610 aa7.29□□□□□ -1.24
CSMD1-201ENST00000335551 SAFB2Q14151 953 aaKnown RBP eCLIP7.29□□□□□ -1.24
CSMD1-201ENST00000335551 FIBPO43427 364 aa7.29□□□□□ -1.24
CSMD1-201ENST00000335551 GTF2E1P29083 439 aaPredicted RBP7.29□□□□□ -1.24
CSMD1-201ENST00000335551 PKD2Q13563 968 aa7.29□□□□□ -1.24
CSMD1-201ENST00000335551 CPSF2Q9P2I0 782 aaKnown RBP7.29□□□□□ -1.24
CSMD1-201ENST00000335551 CNTROBQ8N137 903 aa7.28□□□□□ -1.24
CSMD1-201ENST00000335551 PAK3O75914 559 aaPredicted RBP7.28□□□□□ -1.24
CSMD1-201ENST00000335551 COG6Q9Y2V7 657 aa7.28□□□□□ -1.24
CSMD1-201ENST00000335551 ZSCAN12O43309 604 aa7.28□□□□□ -1.24
CSMD1-201ENST00000335551 EPB41L2O43491 1005 aaKnown RBP7.28□□□□□ -1.24
CSMD1-201ENST00000335551 MCM5P33992 734 aa7.28□□□□□ -1.24
CSMD1-201ENST00000335551 ERC1Q8IUD2 1116 aa7.28□□□□□ -1.24
CSMD1-201ENST00000335551 DAAM2Q86T65 1068 aa7.28□□□□□ -1.24
CSMD1-201ENST00000335551 VPS37DQ86XT2 251 aa7.28□□□□□ -1.24
CSMD1-201ENST00000335551 PRPF40AO75400 957 aaKnown RBP7.28□□□□□ -1.24
CSMD1-201ENST00000335551 STK38Q15208 465 aa7.28□□□□□ -1.24
CSMD1-201ENST00000335551 C6orf163Q5TEZ5 329 aa7.28□□□□□ -1.24
CSMD1-201ENST00000335551 TAF4BQ92750 862 aa7.28□□□□□ -1.24
CSMD1-201ENST00000335551 FOSBP53539 338 aa7.28□□□□□ -1.24
CSMD1-201ENST00000335551 PLIN1O60240 522 aa7.27□□□□□ -1.24
CSMD1-201ENST00000335551 SFPQP23246 707 aaKnown RBP eCLIP7.27□□□□□ -1.24
CSMD1-201ENST00000335551 ANKRD1Q15327 319 aa7.27□□□□□ -1.24
CSMD1-201ENST00000335551 DNAAF4Q8WXU2 420 aa7.27□□□□□ -1.25
CSMD1-201ENST00000335551 PTPN14Q15678 1187 aa7.27□□□□□ -1.25
CSMD1-201ENST00000335551 RNF187Q5TA31 235 aaPredicted RBP7.27□□□□□ -1.25
CSMD1-201ENST00000335551 BRPF1P55201 1214 aaPredicted RBP7.27□□□□□ -1.25
CSMD1-201ENST00000335551 FYB1O15117 783 aa7.27□□□□□ -1.25
CSMD1-201ENST00000335551 PAF1Q8N7H5 531 aa7.27□□□□□ -1.25
CSMD1-201ENST00000335551 KRT85P78386 507 aa7.27□□□□□ -1.25
CSMD1-201ENST00000335551 PRDM10Q9NQV6 1147 aa7.27□□□□□ -1.25
CSMD1-201ENST00000335551 SMTNL1A8MU46 457 aa7.26□□□□□ -1.25
CSMD1-201ENST00000335551 NBPF1Q3BBV0 1214 aa7.26□□□□□ -1.25
CSMD1-201ENST00000335551 FMNL2Q96PY5 1086 aa7.26□□□□□ -1.25
CSMD1-201ENST00000335551 HSPA4P34932 840 aa7.26□□□□□ -1.25
CSMD1-201ENST00000335551 NUP155O75694 1391 aa7.26□□□□□ -1.25
CSMD1-201ENST00000335551 USP47Q96K76 1375 aa7.26□□□□□ -1.25
CSMD1-201ENST00000335551 KIF5CO60282 957 aa7.26□□□□□ -1.25
CSMD1-201ENST00000335551 EID1Q9Y6B2 187 aa7.26□□□□□ -1.25
CSMD1-201ENST00000335551 BBXQ8WY36 941 aaPredicted RBP7.26□□□□□ -1.25
CSMD1-201ENST00000335551 IFFO1Q0D2I5 559 aa7.26□□□□□ -1.25
CSMD1-201ENST00000335551 NOL12Q9UGY1 213 aaKnown RBP eCLIP7.26□□□□□ -1.25
CSMD1-201ENST00000335551 CCDC9Q9Y3X0 531 aaKnown RBP7.26□□□□□ -1.25
CSMD1-201ENST00000335551 V9GYY5 206 aaPredicted RBP7.26□□□□□ -1.25
CSMD1-201ENST00000335551 ZNF397Q8NF99 534 aaPredicted RBP7.26□□□□□ -1.25
CSMD1-201ENST00000335551 DDX58O95786 925 aaKnown RBP7.26□□□□□ -1.25
CSMD1-201ENST00000335551 WWC2Q6AWC2 1192 aa7.26□□□□□ -1.25
CSMD1-201ENST00000335551 ANKS4BQ8N8V4 417 aa7.26□□□□□ -1.25
CSMD1-201ENST00000335551 NEMFO60524 1076 aa7.26□□□□□ -1.25
CSMD1-201ENST00000335551 RBM25P49756 843 aaKnown RBP7.26□□□□□ -1.25
CSMD1-201ENST00000335551 CCDC18Q5T9S5 1454 aa7.26□□□□□ -1.25
CSMD1-201ENST00000335551 MYO10Q9HD67 2058 aa7.25□□□□□ -1.25
CSMD1-201ENST00000335551 CCDC27Q2M243 656 aa7.25□□□□□ -1.25
CSMD1-201ENST00000335551 RAD21O60216 631 aa7.25□□□□□ -1.25
CSMD1-201ENST00000335551 CASQ1P31415 396 aa7.25□□□□□ -1.25
CSMD1-201ENST00000335551 CCDC83Q8IWF9 413 aa7.25□□□□□ -1.25
CSMD1-201ENST00000335551 TMCO5BA8MYB1 307 aa7.25□□□□□ -1.25
CSMD1-201ENST00000335551 SLC3A2P08195 630 aaKnown RBP7.25□□□□□ -1.25
CSMD1-201ENST00000335551 ME1P48163 572 aa7.25□□□□□ -1.25
CSMD1-201ENST00000335551 HMGB1P09429 215 aaKnown RBP7.25□□□□□ -1.25
CSMD1-201ENST00000335551 STK26Q9P289 416 aa7.25□□□□□ -1.25
CSMD1-201ENST00000335551 C1orf141Q5JVX7 400 aa7.25□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms