RNA–Protein interactions for RNA: ENST00000334414.10

PTPRB-202, Transcript of protein tyrosine phosphatase, receptor type B, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene PTPRB, Length 12,316 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRB-202ENST00000334414 SLTMQ9NWH9 1034 aaKnown RBP eCLIP6.54□□□□□ -1.36
PTPRB-202ENST00000334414 HECW1Q76N89 1606 aa6.54□□□□□ -1.36
PTPRB-202ENST00000334414 HS1BP3Q53T59 392 aa6.54□□□□□ -1.36
PTPRB-202ENST00000334414 ERCC6Q03468 1493 aa6.54□□□□□ -1.36
PTPRB-202ENST00000334414 CRACR2AQ9BSW2 395 aa6.54□□□□□ -1.36
PTPRB-202ENST00000334414 CFAP45Q9UL16 551 aa6.54□□□□□ -1.36
PTPRB-202ENST00000334414 DESP17661 470 aa6.54□□□□□ -1.36
PTPRB-202ENST00000334414 VPS53Q5VIR6 699 aa6.54□□□□□ -1.36
PTPRB-202ENST00000334414 EHBP1Q8NDI1 1231 aa6.54□□□□□ -1.36
PTPRB-202ENST00000334414 CDKL5O76039 1030 aa6.54□□□□□ -1.36
PTPRB-202ENST00000334414 PDE3AQ14432 1141 aa6.54□□□□□ -1.36
PTPRB-202ENST00000334414 PDILTQ8N807 584 aa6.54□□□□□ -1.36
PTPRB-202ENST00000334414 MYOM3Q5VTT5 1437 aa6.54□□□□□ -1.36
PTPRB-202ENST00000334414 FYB1O15117 783 aa6.54□□□□□ -1.36
PTPRB-202ENST00000334414 RBM28Q9NW13 759 aaKnown RBP6.53□□□□□ -1.36
PTPRB-202ENST00000334414 K7ELQ4 463 aaPredicted RBP6.53□□□□□ -1.36
PTPRB-202ENST00000334414 SPECC1LQ69YQ0 1117 aa6.53□□□□□ -1.36
PTPRB-202ENST00000334414 GSDMDP57764 484 aa6.53□□□□□ -1.36
PTPRB-202ENST00000334414 CHMP3Q9Y3E7 222 aa6.53□□□□□ -1.36
PTPRB-202ENST00000334414 SMC1AQ14683 1233 aaKnown RBP6.53□□□□□ -1.36
PTPRB-202ENST00000334414 SDF4Q9BRK5 362 aa6.53□□□□□ -1.36
PTPRB-202ENST00000334414 ANKRD18BA2A2Z9 1011 aa6.53□□□□□ -1.36
PTPRB-202ENST00000334414 CCDC102AQ96A19 550 aa6.53□□□□□ -1.36
PTPRB-202ENST00000334414 NBPF1Q3BBV0 1214 aa6.53□□□□□ -1.36
PTPRB-202ENST00000334414 CCDC43Q96MW1 224 aaKnown RBP6.53□□□□□ -1.36
PTPRB-202ENST00000334414 TOMM22Q9NS69 142 aa6.53□□□□□ -1.36
PTPRB-202ENST00000334414 SMARCA4P51532 1647 aa6.53□□□□□ -1.36
PTPRB-202ENST00000334414 CFAP57Q96MR6 1250 aa6.53□□□□□ -1.36
PTPRB-202ENST00000334414 TNMDQ9H2S6 317 aa6.53□□□□□ -1.36
PTPRB-202ENST00000334414 RALYLQ86SE5 291 aaKnown RBP6.53□□□□□ -1.36
PTPRB-202ENST00000334414 ZNF397Q8NF99 534 aaPredicted RBP6.53□□□□□ -1.36
PTPRB-202ENST00000334414 IRX3P78415 501 aaPredicted RBP6.52□□□□□ -1.36
PTPRB-202ENST00000334414 IMMTQ16891 758 aaKnown RBP6.52□□□□□ -1.36
PTPRB-202ENST00000334414 KIF18AQ8NI77 898 aa6.52□□□□□ -1.36
PTPRB-202ENST00000334414 ZNF428Q96B54 188 aa6.52□□□□□ -1.36
PTPRB-202ENST00000334414 ZSCAN31Q96LW9 406 aaPredicted RBP6.52□□□□□ -1.36
PTPRB-202ENST00000334414 KRT85P78386 507 aa6.52□□□□□ -1.37
PTPRB-202ENST00000334414 WDR66Q8TBY9 1149 aa6.52□□□□□ -1.37
PTPRB-202ENST00000334414 UBXN4Q92575 508 aa6.52□□□□□ -1.37
PTPRB-202ENST00000334414 SRCIN1Q9C0H9 1055 aa6.52□□□□□ -1.37
PTPRB-202ENST00000334414 DAPK1P53355 1430 aa6.52□□□□□ -1.37
PTPRB-202ENST00000334414 HMGB1P1B2RPK0 211 aaPredicted RBP6.52□□□□□ -1.37
PTPRB-202ENST00000334414 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6.52□□□□□ -1.37
PTPRB-202ENST00000334414 SLC4A10Q6U841 1118 aa6.52□□□□□ -1.37
PTPRB-202ENST00000334414 CCAR1Q8IX12 1150 aaKnown RBP6.52□□□□□ -1.37
PTPRB-202ENST00000334414 SERPINC1P01008 464 aa6.52□□□□□ -1.37
PTPRB-202ENST00000334414 C6orf163Q5TEZ5 329 aa6.52□□□□□ -1.37
PTPRB-202ENST00000334414 FOXD4L5Q5VV16 416 aaPredicted RBP6.52□□□□□ -1.37
PTPRB-202ENST00000334414 FOXD4L4Q8WXT5 416 aaPredicted RBP6.52□□□□□ -1.37
PTPRB-202ENST00000334414 DNAAF4Q8WXU2 420 aa6.52□□□□□ -1.37
PTPRB-202ENST00000334414 A6NNZ2 444 aa6.51□□□□□ -1.37
PTPRB-202ENST00000334414 TUBB8Q3ZCM7 444 aa6.51□□□□□ -1.37
PTPRB-202ENST00000334414 PLCD4Q9BRC7 762 aa6.51□□□□□ -1.37
PTPRB-202ENST00000334414 NOL12Q9UGY1 213 aaKnown RBP eCLIP6.51□□□□□ -1.37
PTPRB-202ENST00000334414 V9GYY5 206 aaPredicted RBP6.51□□□□□ -1.37
PTPRB-202ENST00000334414 FAM114A1Q8IWE2 563 aa6.51□□□□□ -1.37
PTPRB-202ENST00000334414 STMN4Q9H169 189 aaPredicted RBP6.51□□□□□ -1.37
PTPRB-202ENST00000334414 PPP6R1Q9UPN7 881 aa6.51□□□□□ -1.37
PTPRB-202ENST00000334414 NFXL1Q6ZNB6 911 aa6.51□□□□□ -1.37
PTPRB-202ENST00000334414 SRRTQ9BXP5 876 aaKnown RBP6.51□□□□□ -1.37
PTPRB-202ENST00000334414 BACH2Q9BYV9 841 aa6.51□□□□□ -1.37
PTPRB-202ENST00000334414 SWAP70Q9UH65 585 aa6.51□□□□□ -1.37
PTPRB-202ENST00000334414 FGD6Q6ZV73 1430 aa6.51□□□□□ -1.37
PTPRB-202ENST00000334414 BRPF3Q9ULD4 1205 aa6.51□□□□□ -1.37
PTPRB-202ENST00000334414 KIF5CO60282 957 aa6.51□□□□□ -1.37
PTPRB-202ENST00000334414 WASF1Q92558 559 aa6.51□□□□□ -1.37
PTPRB-202ENST00000334414 L3MBTL2Q969R5 705 aa6.5□□□□□ -1.37
PTPRB-202ENST00000334414 TRIM34Q9BYJ4 488 aa6.5□□□□□ -1.37
PTPRB-202ENST00000334414 WIZO95785 1651 aa6.5□□□□□ -1.37
PTPRB-202ENST00000334414 CCDC171Q6TFL3 1326 aa6.5□□□□□ -1.37
PTPRB-202ENST00000334414 SLC3A2P08195 630 aaKnown RBP6.5□□□□□ -1.37
PTPRB-202ENST00000334414 SEPT6Q14141 434 aa6.5□□□□□ -1.37
PTPRB-202ENST00000334414 HOOK3Q86VS8 718 aa6.5□□□□□ -1.37
PTPRB-202ENST00000334414 CTAGE5O15320 804 aa6.5□□□□□ -1.37
PTPRB-202ENST00000334414 C9orf78Q9NZ63 289 aaPredicted RBP6.5□□□□□ -1.37
PTPRB-202ENST00000334414 DNAI2Q9GZS0 605 aa6.5□□□□□ -1.37
PTPRB-202ENST00000334414 NSRP1Q9H0G5 558 aaKnown RBP6.5□□□□□ -1.37
PTPRB-202ENST00000334414 CASQ1P31415 396 aa6.5□□□□□ -1.37
PTPRB-202ENST00000334414 GNAI3P08754 354 aa6.5□□□□□ -1.37
PTPRB-202ENST00000334414 CDK5RAP3Q96JB5 506 aa6.5□□□□□ -1.37
PTPRB-202ENST00000334414 UVSSAQ2YD98 709 aa6.5□□□□□ -1.37
PTPRB-202ENST00000334414 G3BP1Q13283 466 aaKnown RBP eCLIP6.5□□□□□ -1.37
PTPRB-202ENST00000334414 ARHGAP29Q52LW3 1261 aa6.5□□□□□ -1.37
PTPRB-202ENST00000334414 BMS1Q14692 1282 aaKnown RBP6.5□□□□□ -1.37
PTPRB-202ENST00000334414 KRT222Q8N1A0 295 aa6.5□□□□□ -1.37
PTPRB-202ENST00000334414 TAOK3Q9H2K8 898 aa6.5□□□□□ -1.37
PTPRB-202ENST00000334414 PDS5BQ9NTI5 1447 aa6.5□□□□□ -1.37
PTPRB-202ENST00000334414 TUBBP07437 444 aa6.5□□□□□ -1.37
PTPRB-202ENST00000334414 TRIM21P19474 475 aaKnown RBP6.5□□□□□ -1.37
PTPRB-202ENST00000334414 SFPQP23246 707 aaKnown RBP eCLIP6.5□□□□□ -1.37
PTPRB-202ENST00000334414 CEP131Q9UPN4 1083 aa6.49□□□□□ -1.37
PTPRB-202ENST00000334414 CYP46A1Q9Y6A2 500 aa6.49□□□□□ -1.37
PTPRB-202ENST00000334414 MAP2K1Q02750 393 aaPredicted RBP6.49□□□□□ -1.37
PTPRB-202ENST00000334414 NAA15Q9BXJ9 866 aaKnown RBP6.49□□□□□ -1.37
PTPRB-202ENST00000334414 NUP62CLQ9H1M0 184 aa6.49□□□□□ -1.37
PTPRB-202ENST00000334414 CCDC183Q5T5S1 534 aa6.49□□□□□ -1.37
PTPRB-202ENST00000334414 ANKS4BQ8N8V4 417 aa6.49□□□□□ -1.37
PTPRB-202ENST00000334414 KRT32Q14532 448 aa6.49□□□□□ -1.37
PTPRB-202ENST00000334414 COG3Q96JB2 828 aa6.49□□□□□ -1.37
PTPRB-202ENST00000334414 GTF2A1P52655 376 aaPredicted RBP6.49□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms