RNA–Protein interactions for RNA: ENST00000330949.2

SOX1-201, Transcript of SRY-box 1, humanhuman

APPRIS P1 BASIC

Gene SOX1, Length 2,842 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SOX1-201ENST00000330949 CCDC27Q2M243 656 aa30.18■■■□□ 2.42
SOX1-201ENST00000330949 PTPRTO14522 1441 aa30.18■■■□□ 2.42
SOX1-201ENST00000330949 NUTM2DQ5VT03 806 aaPredicted RBP30.18■■■□□ 2.42
SOX1-201ENST00000330949 CEP152O94986 1710 aa30.18■■■□□ 2.42
SOX1-201ENST00000330949 CARD14Q9BXL6 1004 aa30.18■■■□□ 2.42
SOX1-201ENST00000330949 EIF2AK3Q9NZJ5 1116 aaKnown RBP30.18■■■□□ 2.42
SOX1-201ENST00000330949 SLC24A1O60721 1099 aa30.17■■■□□ 2.42
SOX1-201ENST00000330949 TRPM2O94759 1503 aa30.17■■■□□ 2.42
SOX1-201ENST00000330949 UTP14CQ5TAP6 766 aaKnown RBP30.17■■■□□ 2.42
SOX1-201ENST00000330949 SASS6Q6UVJ0 657 aa30.17■■■□□ 2.42
SOX1-201ENST00000330949 KIF2CQ99661 725 aa30.17■■■□□ 2.42
SOX1-201ENST00000330949 FOXD4L1Q9NU39 408 aa30.17■■■□□ 2.42
SOX1-201ENST00000330949 TRAK1Q9UPV9 953 aa30.17■■■□□ 2.42
SOX1-201ENST00000330949 SHPRHQ149N8 1683 aa30.16■■■□□ 2.42
SOX1-201ENST00000330949 CT47B1P0C2W7 299 aaPredicted RBP30.15■■■□□ 2.42
SOX1-201ENST00000330949 STAC3Q96MF2 364 aa30.14■■■□□ 2.41
SOX1-201ENST00000330949 ZSCAN23Q3MJ62 389 aa30.13■■■□□ 2.41
SOX1-201ENST00000330949 SPHKAPQ2M3C7 1700 aa30.12■■■□□ 2.41
SOX1-201ENST00000330949 TMEM132EQ6IEE7 984 aa30.12■■■□□ 2.41
SOX1-201ENST00000330949 CD2BP2O95400 341 aaKnown RBP30.12■■■□□ 2.41
SOX1-201ENST00000330949 CCDC94Q9BW85 323 aaPredicted RBP30.12■■■□□ 2.41
SOX1-201ENST00000330949 BMP2KLQ5H9B9 411 aa30.11■■■□□ 2.41
SOX1-201ENST00000330949 ATP7AQ04656 1500 aa30.11■■■□□ 2.41
SOX1-201ENST00000330949 NUCB1Q02818 461 aa30.1■■■□□ 2.41
SOX1-201ENST00000330949 NCBP3Q53F19 620 aaKnown RBP30.1■■■□□ 2.41
SOX1-201ENST00000330949 CAVIN1Q6NZI2 390 aaKnown RBP30.1■■■□□ 2.41
SOX1-201ENST00000330949 DMTNQ08495 405 aa30.1■■■□□ 2.41
SOX1-201ENST00000330949 GGT6Q6P531 493 aa30.1■■■□□ 2.41
SOX1-201ENST00000330949 ITPRIPQ8IWB1 547 aa30.1■■■□□ 2.41
SOX1-201ENST00000330949 RBSNQ9H1K0 784 aa30.1■■■□□ 2.41
SOX1-201ENST00000330949 ADGRL1O94910 1474 aa30.09■■■□□ 2.41
SOX1-201ENST00000330949 GAS2L2Q8NHY3 880 aa30.09■■■□□ 2.41
SOX1-201ENST00000330949 CCDC39Q9UFE4 941 aa30.09■■■□□ 2.41
SOX1-201ENST00000330949 KIF16BQ96L93 1317 aa30.08■■■□□ 2.41
SOX1-201ENST00000330949 TRIM27P14373 513 aa30.07■■■□□ 2.4
SOX1-201ENST00000330949 NCLP19338 710 aaKnown RBP30.07■■■□□ 2.4
SOX1-201ENST00000330949 ARID3AQ99856 593 aa30.07■■■□□ 2.4
SOX1-201ENST00000330949 NUCB2P80303 420 aa30.06■■■□□ 2.4
SOX1-201ENST00000330949 SLC12A5Q9H2X9 1139 aa30.06■■■□□ 2.4
SOX1-201ENST00000330949 SMC4Q9NTJ3 1288 aa30.06■■■□□ 2.4
SOX1-201ENST00000330949 MCTP1Q6DN14 999 aa30.06■■■□□ 2.4
SOX1-201ENST00000330949 ZHX1Q9UKY1 873 aaPredicted RBP30.06■■■□□ 2.4
SOX1-201ENST00000330949 CFAP65Q6ZU64 1925 aaKnown RBP30.06■■■□□ 2.4
SOX1-201ENST00000330949 PRDM10Q9NQV6 1147 aa30.04■■■□□ 2.4
SOX1-201ENST00000330949 SAFB2Q14151 953 aaKnown RBP eCLIP30.04■■■□□ 2.4
SOX1-201ENST00000330949 LNPKQ9C0E8 428 aa30.04■■■□□ 2.4
SOX1-201ENST00000330949 ATF7IPQ6VMQ6 1270 aa30.03■■■□□ 2.4
SOX1-201ENST00000330949 CHD1LQ86WJ1 897 aa30.03■■■□□ 2.4
SOX1-201ENST00000330949 CFAP74Q9C0B2 1584 aa30.03■■■□□ 2.4
SOX1-201ENST00000330949 PRIM1P49642 420 aaKnown RBP30.03■■■□□ 2.4
SOX1-201ENST00000330949 LMBRD1Q9NUN5 540 aa30.03■■■□□ 2.4
SOX1-201ENST00000330949 ERVK-7P63135 1459 aa30.02■■■□□ 2.4
SOX1-201ENST00000330949 AK9Q5TCS8 1911 aa30.02■■■□□ 2.4
SOX1-201ENST00000330949 FGD1P98174 961 aa30.01■■■□□ 2.4
SOX1-201ENST00000330949 TET3O43151 1660 aa30.01■■■□□ 2.4
SOX1-201ENST00000330949 DEPDC5O75140 1603 aa30.01■■■□□ 2.39
SOX1-201ENST00000330949 ZBTB40Q9NUA8 1239 aa30.01■■■□□ 2.39
SOX1-201ENST00000330949 MORC1Q86VD1 984 aa30■■■□□ 2.39
SOX1-201ENST00000330949 ASXL2Q76L83 1435 aa30■■■□□ 2.39
SOX1-201ENST00000330949 ZSCAN20P17040 1043 aaPredicted RBP30■■■□□ 2.39
SOX1-201ENST00000330949 RBM42Q9BTD8 480 aaKnown RBP29.99■■■□□ 2.39
SOX1-201ENST00000330949 INO80Q9ULG1 1556 aaPredicted RBP29.98■■■□□ 2.39
SOX1-201ENST00000330949 KIAA1210Q9ULL0 1709 aa29.98■■■□□ 2.39
SOX1-201ENST00000330949 MROH1Q8NDA8 1641 aa29.97■■■□□ 2.39
SOX1-201ENST00000330949 ABCA9Q8IUA7 1624 aa29.96■■■□□ 2.39
SOX1-201ENST00000330949 VWDEQ8N2E2 1590 aa29.96■■■□□ 2.39
SOX1-201ENST00000330949 CYP2E1P05181 493 aaPredicted RBP29.95■■■□□ 2.39
SOX1-201ENST00000330949 TBC1D9Q6ZT07 1266 aa29.95■■■□□ 2.39
SOX1-201ENST00000330949 MYRIPQ8NFW9 859 aa29.95■■■□□ 2.39
SOX1-201ENST00000330949 LRSAM1Q6UWE0 723 aa29.95■■■□□ 2.38
SOX1-201ENST00000330949 CFAP53Q96M91 514 aa29.95■■■□□ 2.38
SOX1-201ENST00000330949 NOS1P29475 1434 aa29.94■■■□□ 2.38
SOX1-201ENST00000330949 ARAP3Q8WWN8 1544 aa29.94■■■□□ 2.38
SOX1-201ENST00000330949 SSH1Q8WYL5 1049 aa29.94■■■□□ 2.38
SOX1-201ENST00000330949 TMEM57Q8N5G2 664 aa29.94■■■□□ 2.38
SOX1-201ENST00000330949 GTPBP4Q9BZE4 634 aaKnown RBP29.94■■■□□ 2.38
SOX1-201ENST00000330949 KIAA2012Q0VF49 1180 aa29.93■■■□□ 2.38
SOX1-201ENST00000330949 ABCA6Q8N139 1617 aa29.93■■■□□ 2.38
SOX1-201ENST00000330949 RABEP1Q15276 862 aa29.92■■■□□ 2.38
SOX1-201ENST00000330949 ZNF518AQ6AHZ1 1483 aa29.92■■■□□ 2.38
SOX1-201ENST00000330949 EXOSC9Q06265 439 aaKnown RBP29.91■■■□□ 2.38
SOX1-201ENST00000330949 NOB1Q9ULX3 412 aaKnown RBP29.91■■■□□ 2.38
SOX1-201ENST00000330949 KIF20AO95235 890 aa29.91■■■□□ 2.38
SOX1-201ENST00000330949 PRIMPOLQ96LW4 560 aa29.91■■■□□ 2.38
SOX1-201ENST00000330949 NSD3Q9BZ95 1437 aa29.9■■■□□ 2.38
SOX1-201ENST00000330949 IPO8O15397 1037 aaKnown RBP29.9■■■□□ 2.38
SOX1-201ENST00000330949 TSR2Q969E8 191 aaKnown RBP29.9■■■□□ 2.38
SOX1-201ENST00000330949 CWC22Q9HCG8 908 aaKnown RBP29.9■■■□□ 2.38
SOX1-201ENST00000330949 HMGN5P82970 282 aaKnown RBP29.89■■■□□ 2.38
SOX1-201ENST00000330949 MAP3K4Q9Y6R4 1608 aa29.89■■■□□ 2.38
SOX1-201ENST00000330949 ADGRB2O60241 1585 aa29.88■■■□□ 2.37
SOX1-201ENST00000330949 PRPF40AO75400 957 aaKnown RBP29.88■■■□□ 2.37
SOX1-201ENST00000330949 GCC1Q96CN9 775 aa29.88■■■□□ 2.37
SOX1-201ENST00000330949 MROH2AA6NES4 1674 aa29.88■■■□□ 2.37
SOX1-201ENST00000330949 GPT2Q8TD30 523 aa29.88■■■□□ 2.37
SOX1-201ENST00000330949 ABCC11Q96J66 1382 aa29.88■■■□□ 2.37
SOX1-201ENST00000330949 MTHFSP49914 203 aa29.87■■■□□ 2.37
SOX1-201ENST00000330949 REREQ9P2R6 1566 aa29.87■■■□□ 2.37
SOX1-201ENST00000330949 KIDINS220Q9ULH0 1771 aa29.86■■■□□ 2.37
SOX1-201ENST00000330949 PTMAP06454 111 aaKnown RBP29.86■■■□□ 2.37
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms