RNA–Protein interactions for RNA: ENST00000329231.8

ATPAF1-201, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

TSL 2 BASIC

Gene ATPAF1, Length 1,241 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-201ENST00000329231 ALS2Q96Q42 1657 aa39.22■■■■□ 3.87
ATPAF1-201ENST00000329231 CDK12Q9NYV4 1490 aaPredicted RBP39.19■■■■□ 3.86
ATPAF1-201ENST00000329231 BCL9LQ86UU0 1499 aa39.17■■■■□ 3.86
ATPAF1-201ENST00000329231 SBNO2Q9Y2G9 1366 aa39.16■■■■□ 3.86
ATPAF1-201ENST00000329231 CABP1Q9NZU7 370 aa39.15■■■■□ 3.86
ATPAF1-201ENST00000329231 TIMELESSQ9UNS1 1208 aa39.14■■■■□ 3.86
ATPAF1-201ENST00000329231 ABCA3Q99758 1704 aa39.14■■■■□ 3.86
ATPAF1-201ENST00000329231 ATRNO75882 1429 aa39.14■■■■□ 3.86
ATPAF1-201ENST00000329231 SLIT2O94813 1529 aa39.13■■■■□ 3.85
ATPAF1-201ENST00000329231 UNC5CLQ8IV45 518 aa39.11■■■■□ 3.85
ATPAF1-201ENST00000329231 BRD4O60885 1362 aaPredicted RBP39.08■■■■□ 3.85
ATPAF1-201ENST00000329231 ATAD2Q6PL18 1390 aa39.08■■■■□ 3.85
ATPAF1-201ENST00000329231 FAM83GA6ND36 823 aa39.05■■■■□ 3.84
ATPAF1-201ENST00000329231 ABTB2Q8N961 1025 aa39.05■■■■□ 3.84
ATPAF1-201ENST00000329231 RGS12O14924 1447 aa39.04■■■■□ 3.84
ATPAF1-201ENST00000329231 TNKS1BP1Q9C0C2 1729 aaKnown RBP39.03■■■■□ 3.84
ATPAF1-201ENST00000329231 NUTM2GQ5VZR2 741 aa39.03■■■■□ 3.84
ATPAF1-201ENST00000329231 CCER1Q8TC90 406 aaPredicted RBP39.02■■■■□ 3.84
ATPAF1-201ENST00000329231 GJD4Q96KN9 370 aaPredicted RBP39.02■■■■□ 3.84
ATPAF1-201ENST00000329231 USP6P35125 1406 aa39.01■■■■□ 3.84
ATPAF1-201ENST00000329231 CRYBG1Q9Y4K1 1723 aa39■■■■□ 3.83
ATPAF1-201ENST00000329231 ZNF692Q9BU19 519 aaPredicted RBP38.99■■■■□ 3.83
ATPAF1-201ENST00000329231 NWD2Q9ULI1 1742 aa38.97■■■■□ 3.83
ATPAF1-201ENST00000329231 PLCH1Q4KWH8 1693 aa38.97■■■■□ 3.83
ATPAF1-201ENST00000329231 ST20-MTHFSA0A0A6YYL1 179 aa38.96■■■■□ 3.83
ATPAF1-201ENST00000329231 NLRP13Q86W25 1043 aa38.96■■■■□ 3.83
ATPAF1-201ENST00000329231 PRDM11Q9NQV5 511 aa38.96■■■■□ 3.83
ATPAF1-201ENST00000329231 SLC24A1O60721 1099 aa38.95■■■■□ 3.83
ATPAF1-201ENST00000329231 VPS72Q15906 364 aa38.95■■■■□ 3.83
ATPAF1-201ENST00000329231 COL14A1Q05707 1796 aaKnown RBP38.93■■■■□ 3.82
ATPAF1-201ENST00000329231 BTG4Q9NY30 223 aa38.93■■■■□ 3.82
ATPAF1-201ENST00000329231 PUS7Q96PZ0 661 aaKnown RBP38.92■■■■□ 3.82
ATPAF1-201ENST00000329231 TESK2Q96S53 571 aa38.92■■■■□ 3.82
ATPAF1-201ENST00000329231 USP19O94966 1318 aa38.91■■■■□ 3.82
ATPAF1-201ENST00000329231 PHRF1Q9P1Y6 1649 aaKnown RBP38.91■■■■□ 3.82
ATPAF1-201ENST00000329231 KIAA0232Q92628 1395 aa38.91■■■■□ 3.82
ATPAF1-201ENST00000329231 SSH2Q76I76 1423 aa38.9■■■■□ 3.82
ATPAF1-201ENST00000329231 CCDC9Q9Y3X0 531 aaKnown RBP38.89■■■■□ 3.82
ATPAF1-201ENST00000329231 CPSF1Q10570 1443 aaKnown RBP38.89■■■■□ 3.82
ATPAF1-201ENST00000329231 USP47Q96K76 1375 aa38.88■■■■□ 3.81
ATPAF1-201ENST00000329231 ZC3H6P61129 1189 aaKnown RBP38.88■■■■□ 3.81
ATPAF1-201ENST00000329231 NLRP6P59044 892 aa38.87■■■■□ 3.81
ATPAF1-201ENST00000329231 TMC1Q8TDI8 760 aa38.86■■■■□ 3.81
ATPAF1-201ENST00000329231 KTN1Q86UP2 1357 aaKnown RBP38.85■■■■□ 3.81
ATPAF1-201ENST00000329231 UPF1Q92900 1129 aaKnown RBP eCLIP38.85■■■■□ 3.81
ATPAF1-201ENST00000329231 GLI3P10071 1580 aa38.85■■■■□ 3.81
ATPAF1-201ENST00000329231 TTC21BQ7Z4L5 1316 aa38.85■■■■□ 3.81
ATPAF1-201ENST00000329231 GCP02774 474 aa38.84■■■■□ 3.81
ATPAF1-201ENST00000329231 AKAP12Q02952 1782 aa38.84■■■■□ 3.81
ATPAF1-201ENST00000329231 CHRNA2Q15822 529 aa38.83■■■■□ 3.81
ATPAF1-201ENST00000329231 TTC21AQ8NDW8 1320 aa38.83■■■■□ 3.81
ATPAF1-201ENST00000329231 NRKQ7Z2Y5 1582 aa38.82■■■■□ 3.81
ATPAF1-201ENST00000329231 NRAPQ86VF7 1730 aa38.82■■■■□ 3.8
ATPAF1-201ENST00000329231 CPDO75976 1380 aa38.81■■■■□ 3.8
ATPAF1-201ENST00000329231 SLC12A5Q9H2X9 1139 aa38.8■■■■□ 3.8
ATPAF1-201ENST00000329231 HDGFL2Q7Z4V5 671 aaPredicted RBP38.79■■■■□ 3.8
ATPAF1-201ENST00000329231 TERF2IPQ9NYB0 399 aa38.77■■■■□ 3.8
ATPAF1-201ENST00000329231 PIK3C2AO00443 1686 aa38.77■■■■□ 3.8
ATPAF1-201ENST00000329231 TMF1P82094 1093 aa38.76■■■■□ 3.8
ATPAF1-201ENST00000329231 CD163L1Q9NR16 1453 aa38.75■■■■□ 3.79
ATPAF1-201ENST00000329231 NINLQ9Y2I6 1382 aa38.75■■■■□ 3.79
ATPAF1-201ENST00000329231 ONECUT3O60422 494 aaPredicted RBP38.74■■■■□ 3.79
ATPAF1-201ENST00000329231 SLIT3O75094 1523 aa38.73■■■■□ 3.79
ATPAF1-201ENST00000329231 SEPT12Q8IYM1 358 aa38.73■■■■□ 3.79
ATPAF1-201ENST00000329231 MON2Q7Z3U7 1717 aa38.72■■■■□ 3.79
ATPAF1-201ENST00000329231 SPATA31A5Q5VU36 1347 aa38.72■■■■□ 3.79
ATPAF1-201ENST00000329231 SPATA31A7Q8IWB4 1347 aa38.72■■■■□ 3.79
ATPAF1-201ENST00000329231 STRN4Q9NRL3 753 aa38.71■■■■□ 3.79
ATPAF1-201ENST00000329231 SUGP2Q8IX01 1082 aaKnown RBP eCLIP38.7■■■■□ 3.79
ATPAF1-201ENST00000329231 EVA1CP58658 441 aa38.69■■■■□ 3.78
ATPAF1-201ENST00000329231 KCNH5Q8NCM2 988 aa38.68■■■■□ 3.78
ATPAF1-201ENST00000329231 A0A1W2PP64 1363 aa38.68■■■■□ 3.78
ATPAF1-201ENST00000329231 FAM98CQ17RN3 349 aaKnown RBP38.67■■■■□ 3.78
ATPAF1-201ENST00000329231 CDCA8Q53HL2 280 aa38.67■■■■□ 3.78
ATPAF1-201ENST00000329231 EDC4Q6P2E9 1401 aaKnown RBP38.66■■■■□ 3.78
ATPAF1-201ENST00000329231 A0A0G2JS52 829 aa38.65■■■■□ 3.78
ATPAF1-201ENST00000329231 MYT1Q01538 1121 aa38.65■■■■□ 3.78
ATPAF1-201ENST00000329231 CAMTA1Q9Y6Y1 1673 aa38.65■■■■□ 3.78
ATPAF1-201ENST00000329231 ZBTB7CA1YPR0 619 aa38.64■■■■□ 3.78
ATPAF1-201ENST00000329231 LMO7Q8WWI1 1683 aa38.63■■■■□ 3.77
ATPAF1-201ENST00000329231 SPATA31A1Q5TZJ5 1347 aa38.63■■■■□ 3.77
ATPAF1-201ENST00000329231 AATKQ6ZMQ8 1374 aa38.62■■■■□ 3.77
ATPAF1-201ENST00000329231 USP31Q70CQ4 1352 aa38.62■■■■□ 3.77
ATPAF1-201ENST00000329231 NME9Q86XW9 330 aa38.61■■■■□ 3.77
ATPAF1-201ENST00000329231 SOX12O15370 315 aa38.59■■■■□ 3.77
ATPAF1-201ENST00000329231 KRT27Q7Z3Y8 459 aa38.58■■■■□ 3.77
ATPAF1-201ENST00000329231 ZRANB1Q9UGI0 708 aa38.58■■■■□ 3.77
ATPAF1-201ENST00000329231 LARP1Q6PKG0 1096 aaKnown RBP38.57■■■■□ 3.76
ATPAF1-201ENST00000329231 ARHGEF25Q86VW2 580 aa38.57■■■■□ 3.76
ATPAF1-201ENST00000329231 BRWD3Q6RI45 1802 aa38.56■■■■□ 3.76
ATPAF1-201ENST00000329231 COL5A2P05997 1499 aaPredicted RBP38.55■■■■□ 3.76
ATPAF1-201ENST00000329231 ANKRD36BQ8N2N9 1353 aa38.55■■■■□ 3.76
ATPAF1-201ENST00000329231 USP35Q9P2H5 1018 aa38.54■■■■□ 3.76
ATPAF1-201ENST00000329231 CCDC125Q86Z20 511 aa38.53■■■■□ 3.76
ATPAF1-201ENST00000329231 NFAT5O94916 1531 aa38.52■■■■□ 3.76
ATPAF1-201ENST00000329231 USP54Q70EL1 1684 aa38.52■■■■□ 3.76
ATPAF1-201ENST00000329231 EIF4G2P78344 907 aaKnown RBP eCLIP38.51■■■■□ 3.76
ATPAF1-201ENST00000329231 BARGINQ6ZT62 677 aa38.5■■■■□ 3.75
ATPAF1-201ENST00000329231 TCP11L2Q8N4U5 519 aa38.49■■■■□ 3.75
ATPAF1-201ENST00000329231 AXIN2Q9Y2T1 843 aa38.48■■■■□ 3.75
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms