RNA–Protein interactions for RNA: ENST00000321356.8

CLK1-201, Transcript of CDC like kinase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK1, Length 1,888 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-201ENST00000321356 SLC52A1Q9NWF4 448 aa11.11□□□□□ -0.63
CLK1-201ENST00000321356 TMPOP42166 694 aaKnown RBP11.1□□□□□ -0.63
CLK1-201ENST00000321356 NUTM2DQ5VT03 806 aaPredicted RBP11.1□□□□□ -0.63
CLK1-201ENST00000321356 DZIP1LQ8IYY4 767 aaKnown RBP11.1□□□□□ -0.63
CLK1-201ENST00000321356 TRIM35Q9UPQ4 493 aa11.1□□□□□ -0.63
CLK1-201ENST00000321356 PNPLA6Q8IY17 1366 aa11.1□□□□□ -0.63
CLK1-201ENST00000321356 KIF20BQ96Q89 1820 aa11.1□□□□□ -0.63
CLK1-201ENST00000321356 ANTXR1Q9H6X2 564 aa11.1□□□□□ -0.63
CLK1-201ENST00000321356 RAPGEF3O95398 923 aa11.09□□□□□ -0.63
CLK1-201ENST00000321356 HDAC1Q13547 482 aaPredicted RBP11.09□□□□□ -0.63
CLK1-201ENST00000321356 TSR2Q969E8 191 aaKnown RBP11.09□□□□□ -0.63
CLK1-201ENST00000321356 YTHDC2Q9H6S0 1430 aaKnown RBP11.09□□□□□ -0.63
CLK1-201ENST00000321356 FYB1O15117 783 aa11.08□□□□□ -0.64
CLK1-201ENST00000321356 EXOSC9Q06265 439 aaKnown RBP11.08□□□□□ -0.64
CLK1-201ENST00000321356 UPF2Q9HAU5 1272 aaKnown RBP11.08□□□□□ -0.64
CLK1-201ENST00000321356 TERF2IPQ9NYB0 399 aa11.08□□□□□ -0.64
CLK1-201ENST00000321356 ARHGEF40Q8TER5 1519 aa11.08□□□□□ -0.64
CLK1-201ENST00000321356 TRIM27P14373 513 aa11.08□□□□□ -0.64
CLK1-201ENST00000321356 FTSJ3Q8IY81 847 aaKnown RBP11.08□□□□□ -0.64
CLK1-201ENST00000321356 SSH1Q8WYL5 1049 aa11.08□□□□□ -0.64
CLK1-201ENST00000321356 GGNBP2Q9H3C7 697 aa11.08□□□□□ -0.64
CLK1-201ENST00000321356 SMC4Q9NTJ3 1288 aa11.08□□□□□ -0.64
CLK1-201ENST00000321356 BRPF3Q9ULD4 1205 aa11.08□□□□□ -0.64
CLK1-201ENST00000321356 ALKQ9UM73 1620 aa11.07□□□□□ -0.64
CLK1-201ENST00000321356 SRPK2P78362 688 aaKnown RBP11.07□□□□□ -0.64
CLK1-201ENST00000321356 SAFB2Q14151 953 aaKnown RBP eCLIP11.07□□□□□ -0.64
CLK1-201ENST00000321356 ATF7IPQ6VMQ6 1270 aa11.07□□□□□ -0.64
CLK1-201ENST00000321356 DDX19BQ9UMR2 479 aa11.07□□□□□ -0.64
CLK1-201ENST00000321356 YEATS2Q9ULM3 1422 aa11.07□□□□□ -0.64
CLK1-201ENST00000321356 U2SURPO15042 1029 aaKnown RBP11.06□□□□□ -0.64
CLK1-201ENST00000321356 LRRC7Q96NW7 1537 aa11.06□□□□□ -0.64
CLK1-201ENST00000321356 SMC5Q8IY18 1101 aa11.06□□□□□ -0.64
CLK1-201ENST00000321356 TBC1D2Q9BYX2 928 aa11.06□□□□□ -0.64
CLK1-201ENST00000321356 STK26Q9P289 416 aa11.06□□□□□ -0.64
CLK1-201ENST00000321356 PPIP5K1Q6PFW1 1433 aa11.06□□□□□ -0.64
CLK1-201ENST00000321356 OSCARQ8IYS5 282 aa11.05□□□□□ -0.64
CLK1-201ENST00000321356 PRAM1Q96QH2 718 aa11.05□□□□□ -0.64
CLK1-201ENST00000321356 DLC1Q96QB1 1528 aa11.05□□□□□ -0.64
CLK1-201ENST00000321356 MINK1Q8N4C8 1332 aaPredicted RBP11.05□□□□□ -0.64
CLK1-201ENST00000321356 DIAPH1O60610 1272 aaKnown RBP11.04□□□□□ -0.64
CLK1-201ENST00000321356 PNNQ9H307 717 aaKnown RBP11.04□□□□□ -0.64
CLK1-201ENST00000321356 ZBTB40Q9NUA8 1239 aa11.04□□□□□ -0.64
CLK1-201ENST00000321356 KIF16BQ96L93 1317 aa11.04□□□□□ -0.64
CLK1-201ENST00000321356 SETD1AO15047 1707 aaKnown RBP11.04□□□□□ -0.64
CLK1-201ENST00000321356 FAM135BQ49AJ0 1406 aa11.04□□□□□ -0.64
CLK1-201ENST00000321356 ALDH1L2Q3SY69 923 aa11.04□□□□□ -0.64
CLK1-201ENST00000321356 ATP7BP35670 1465 aa11.03□□□□□ -0.64
CLK1-201ENST00000321356 BRPF1P55201 1214 aaPredicted RBP11.03□□□□□ -0.64
CLK1-201ENST00000321356 RIPK4P57078 832 aa11.03□□□□□ -0.64
CLK1-201ENST00000321356 HDGFL2Q7Z4V5 671 aaPredicted RBP11.03□□□□□ -0.64
CLK1-201ENST00000321356 ITPRIPQ8IWB1 547 aa11.03□□□□□ -0.64
CLK1-201ENST00000321356 SLKQ9H2G2 1235 aaPredicted RBP11.03□□□□□ -0.64
CLK1-201ENST00000321356 NOB1Q9ULX3 412 aaKnown RBP11.03□□□□□ -0.64
CLK1-201ENST00000321356 FCHSD2O94868 740 aa11.02□□□□□ -0.64
CLK1-201ENST00000321356 TMEM57Q8N5G2 664 aa11.02□□□□□ -0.64
CLK1-201ENST00000321356 RTN4Q9NQC3 1192 aaKnown RBP11.02□□□□□ -0.64
CLK1-201ENST00000321356 POGKQ9P215 609 aa11.02□□□□□ -0.64
CLK1-201ENST00000321356 RIMBP3CA6NJZ7 1639 aa11.02□□□□□ -0.65
CLK1-201ENST00000321356 RIMBP3BA6NNM3 1639 aa11.02□□□□□ -0.65
CLK1-201ENST00000321356 RIMBP3Q9UFD9 1639 aa11.02□□□□□ -0.65
CLK1-201ENST00000321356 IPO8O15397 1037 aaKnown RBP11.02□□□□□ -0.65
CLK1-201ENST00000321356 ZNF428Q96B54 188 aa11.02□□□□□ -0.65
CLK1-201ENST00000321356 CDK19Q9BWU1 502 aa11.02□□□□□ -0.65
CLK1-201ENST00000321356 C22orf23Q9BZE7 217 aa11.01□□□□□ -0.65
CLK1-201ENST00000321356 RSPH6AQ9H0K4 717 aa11.01□□□□□ -0.65
CLK1-201ENST00000321356 REREQ9P2R6 1566 aa11□□□□□ -0.65
CLK1-201ENST00000321356 PIK3R4Q99570 1358 aa11□□□□□ -0.65
CLK1-201ENST00000321356 MAP2P11137 1827 aaKnown RBP11□□□□□ -0.65
CLK1-201ENST00000321356 NUCB1Q02818 461 aa11□□□□□ -0.65
CLK1-201ENST00000321356 CABP1Q9NZU7 370 aa11□□□□□ -0.65
CLK1-201ENST00000321356 PTCH1Q13635 1447 aa10.99□□□□□ -0.65
CLK1-201ENST00000321356 POLKQ9UBT6 870 aa10.99□□□□□ -0.65
CLK1-201ENST00000321356 NCOA3Q9Y6Q9 1424 aa10.99□□□□□ -0.65
CLK1-201ENST00000321356 FBXO31Q5XUX0 539 aaPredicted RBP10.98□□□□□ -0.65
CLK1-201ENST00000321356 A2ML1A8K2U0 1454 aa10.98□□□□□ -0.65
CLK1-201ENST00000321356 CDK12Q9NYV4 1490 aaPredicted RBP10.98□□□□□ -0.65
CLK1-201ENST00000321356 AGLP35573 1532 aa10.98□□□□□ -0.65
CLK1-201ENST00000321356 CPSF1Q10570 1443 aaKnown RBP10.98□□□□□ -0.65
CLK1-201ENST00000321356 PRKAR2BP31323 418 aa10.98□□□□□ -0.65
CLK1-201ENST00000321356 MFAP1P55081 439 aaKnown RBP10.98□□□□□ -0.65
CLK1-201ENST00000321356 SPATA31D1Q6ZQQ2 1576 aa10.97□□□□□ -0.65
CLK1-201ENST00000321356 EDC4Q6P2E9 1401 aaKnown RBP10.97□□□□□ -0.65
CLK1-201ENST00000321356 RBM25P49756 843 aaKnown RBP10.97□□□□□ -0.65
CLK1-201ENST00000321356 NFE2L2Q16236 605 aa10.97□□□□□ -0.65
CLK1-201ENST00000321356 ARHGAP45Q92619 1136 aa10.97□□□□□ -0.65
CLK1-201ENST00000321356 CHMP5Q9NZZ3 219 aa10.97□□□□□ -0.65
CLK1-201ENST00000321356 MON2Q7Z3U7 1717 aa10.96□□□□□ -0.65
CLK1-201ENST00000321356 NRXN3Q9Y4C0 1643 aa10.96□□□□□ -0.66
CLK1-201ENST00000321356 DLG5Q8TDM6 1919 aa10.96□□□□□ -0.66
CLK1-201ENST00000321356 ZBTB7BO15156 539 aaPredicted RBP10.95□□□□□ -0.66
CLK1-201ENST00000321356 VAMP4O75379 141 aa10.95□□□□□ -0.66
CLK1-201ENST00000321356 ZNF853P0CG23 659 aa10.95□□□□□ -0.66
CLK1-201ENST00000321356 MCM4P33991 863 aa10.95□□□□□ -0.66
CLK1-201ENST00000321356 CALD1Q05682 793 aaKnown RBP10.95□□□□□ -0.66
CLK1-201ENST00000321356 CHD1LQ86WJ1 897 aa10.95□□□□□ -0.66
CLK1-201ENST00000321356 MRPL50Q8N5N7 158 aaKnown RBP10.95□□□□□ -0.66
CLK1-201ENST00000321356 ZNF692Q9BU19 519 aaPredicted RBP10.95□□□□□ -0.66
CLK1-201ENST00000321356 AATKQ6ZMQ8 1374 aa10.95□□□□□ -0.66
CLK1-201ENST00000321356 DDIT3P35638 169 aa10.95□□□□□ -0.66
CLK1-201ENST00000321356 BMP2KLQ5H9B9 411 aa10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms