RNA–Protein interactions for RNA: ENST00000310441.11

HCFC1-201, Transcript of host cell factor C1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HCFC1, Length 8,869 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HCFC1-201ENST00000310441 GNL3LQ9NVN8 582 aaKnown RBP18.36■□□□□ 0.53
HCFC1-201ENST00000310441 PKNOX2Q96KN3 472 aa18.35■□□□□ 0.53
HCFC1-201ENST00000310441 LRRCC1Q9C099 1032 aa18.35■□□□□ 0.53
HCFC1-201ENST00000310441 RIPK4P57078 832 aa18.35■□□□□ 0.53
HCFC1-201ENST00000310441 BCL2L13Q9BXK5 485 aa18.35■□□□□ 0.53
HCFC1-201ENST00000310441 CDKL5O76039 1030 aa18.35■□□□□ 0.53
HCFC1-201ENST00000310441 TRIM22Q8IYM9 498 aa18.35■□□□□ 0.53
HCFC1-201ENST00000310441 CCDC7Q96M83 1385 aa18.35■□□□□ 0.53
HCFC1-201ENST00000310441 MSH5O43196 834 aa18.35■□□□□ 0.53
HCFC1-201ENST00000310441 PLCD4Q9BRC7 762 aa18.35■□□□□ 0.53
HCFC1-201ENST00000310441 IKQ13123 557 aaPredicted RBP18.35■□□□□ 0.53
HCFC1-201ENST00000310441 WASHC4Q2M389 1173 aa18.34■□□□□ 0.53
HCFC1-201ENST00000310441 TTLL5Q6EMB2 1281 aa18.34■□□□□ 0.53
HCFC1-201ENST00000310441 CNTLNQ9NXG0 1405 aa18.34■□□□□ 0.53
HCFC1-201ENST00000310441 ST20-MTHFSA0A0A6YYL1 179 aa18.34■□□□□ 0.53
HCFC1-201ENST00000310441 MAP9Q49MG5 647 aa18.33■□□□□ 0.53
HCFC1-201ENST00000310441 HMGB2P26583 209 aaKnown RBP18.33■□□□□ 0.53
HCFC1-201ENST00000310441 GNAI3P08754 354 aa18.33■□□□□ 0.52
HCFC1-201ENST00000310441 FAM107BQ9H098 131 aa18.33■□□□□ 0.52
HCFC1-201ENST00000310441 PRKRIP1Q9H875 184 aaPredicted RBP18.33■□□□□ 0.52
HCFC1-201ENST00000310441 PODXL2Q9NZ53 605 aa18.33■□□□□ 0.52
HCFC1-201ENST00000310441 ANKRD62A6NC57 917 aa18.33■□□□□ 0.52
HCFC1-201ENST00000310441 JAKMIP3Q5VZ66 844 aa18.33■□□□□ 0.52
HCFC1-201ENST00000310441 TRAK1Q9UPV9 953 aa18.33■□□□□ 0.52
HCFC1-201ENST00000310441 SERPINC1P01008 464 aa18.33■□□□□ 0.52
HCFC1-201ENST00000310441 CCDC112Q8NEF3 446 aa18.33■□□□□ 0.52
HCFC1-201ENST00000310441 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP18.32■□□□□ 0.52
HCFC1-201ENST00000310441 STAMBPO95630 424 aa18.32■□□□□ 0.52
HCFC1-201ENST00000310441 PSME1Q06323 249 aa18.32■□□□□ 0.52
HCFC1-201ENST00000310441 CCDC27Q2M243 656 aa18.32■□□□□ 0.52
HCFC1-201ENST00000310441 GBP3Q9H0R5 595 aa18.32■□□□□ 0.52
HCFC1-201ENST00000310441 RIC3Q7Z5B4 369 aa18.31■□□□□ 0.52
HCFC1-201ENST00000310441 CFAP45Q9UL16 551 aa18.31■□□□□ 0.52
HCFC1-201ENST00000310441 PPM1EQ8WY54 764 aa18.31■□□□□ 0.52
HCFC1-201ENST00000310441 TSPYL4Q9UJ04 414 aa18.31■□□□□ 0.52
HCFC1-201ENST00000310441 POTEJP0CG39 1038 aa18.31■□□□□ 0.52
HCFC1-201ENST00000310441 DDX11Q96FC9 970 aa18.31■□□□□ 0.52
HCFC1-201ENST00000310441 TRAK2O60296 914 aa18.3■□□□□ 0.52
HCFC1-201ENST00000310441 CCDC88BA6NC98 1476 aa18.3■□□□□ 0.52
HCFC1-201ENST00000310441 KIF6Q6ZMV9 814 aa18.3■□□□□ 0.52
HCFC1-201ENST00000310441 CETN2P41208 172 aa18.3■□□□□ 0.52
HCFC1-201ENST00000310441 ZNF397Q8NF99 534 aaPredicted RBP18.3■□□□□ 0.52
HCFC1-201ENST00000310441 STK38Q15208 465 aa18.3■□□□□ 0.52
HCFC1-201ENST00000310441 WDR33Q9C0J8 1336 aaKnown RBP18.3■□□□□ 0.52
HCFC1-201ENST00000310441 EXOC6Q8TAG9 804 aa18.3■□□□□ 0.52
HCFC1-201ENST00000310441 FSD1Q9BTV5 496 aa18.29■□□□□ 0.52
HCFC1-201ENST00000310441 PDCL3Q9H2J4 239 aa18.29■□□□□ 0.52
HCFC1-201ENST00000310441 NFKBIBQ15653 356 aa18.29■□□□□ 0.52
HCFC1-201ENST00000310441 NACAP1Q9BZK3 213 aa18.29■□□□□ 0.52
HCFC1-201ENST00000310441 GOLGA6L10A0A0M3HER8 536 aa18.29■□□□□ 0.52
HCFC1-201ENST00000310441 NEUROD6Q96NK8 337 aa18.28■□□□□ 0.52
HCFC1-201ENST00000310441 PPP1R12BO60237 982 aaPredicted RBP18.28■□□□□ 0.52
HCFC1-201ENST00000310441 CCDC30Q5VVM6 783 aa18.28■□□□□ 0.52
HCFC1-201ENST00000310441 BRD4O60885 1362 aaPredicted RBP18.28■□□□□ 0.52
HCFC1-201ENST00000310441 SUPT6HQ7KZ85 1726 aaKnown RBP18.28■□□□□ 0.52
HCFC1-201ENST00000310441 ELL2O00472 640 aaPredicted RBP18.28■□□□□ 0.52
HCFC1-201ENST00000310441 DCAF8L1A6NGE4 600 aa18.28■□□□□ 0.52
HCFC1-201ENST00000310441 RRP9O43818 475 aaKnown RBP18.28■□□□□ 0.52
HCFC1-201ENST00000310441 BMP2KQ9NSY1 1161 aaPredicted RBP18.28■□□□□ 0.52
HCFC1-201ENST00000310441 FYCO1Q9BQS8 1478 aa18.28■□□□□ 0.52
HCFC1-201ENST00000310441 TNMDQ9H2S6 317 aa18.28■□□□□ 0.52
HCFC1-201ENST00000310441 PLIN1O60240 522 aa18.27■□□□□ 0.52
HCFC1-201ENST00000310441 MEX3CQ5U5Q3 659 aaKnown RBP18.27■□□□□ 0.52
HCFC1-201ENST00000310441 SLC4A3P48751 1232 aa18.27■□□□□ 0.52
HCFC1-201ENST00000310441 RAPGEF4Q8WZA2 1011 aa18.27■□□□□ 0.52
HCFC1-201ENST00000310441 NF2P35240 595 aa18.27■□□□□ 0.52
HCFC1-201ENST00000310441 IMMTQ16891 758 aaKnown RBP18.27■□□□□ 0.52
HCFC1-201ENST00000310441 SRCIN1Q9C0H9 1055 aa18.27■□□□□ 0.51
HCFC1-201ENST00000310441 SYTL4Q96C24 671 aaPredicted RBP18.27■□□□□ 0.51
HCFC1-201ENST00000310441 KRT85P78386 507 aa18.26■□□□□ 0.51
HCFC1-201ENST00000310441 SPATA24Q86W54 205 aa18.26■□□□□ 0.51
HCFC1-201ENST00000310441 ZSCAN25Q6NSZ9 544 aa18.26■□□□□ 0.51
HCFC1-201ENST00000310441 CCDC148Q8NFR7 591 aa18.26■□□□□ 0.51
HCFC1-201ENST00000310441 NOL7Q9UMY1 257 aaKnown RBP18.26■□□□□ 0.51
HCFC1-201ENST00000310441 CENPHQ9H3R5 247 aa18.26■□□□□ 0.51
HCFC1-201ENST00000310441 GCC1Q96CN9 775 aa18.26■□□□□ 0.51
HCFC1-201ENST00000310441 SMTNL1A8MU46 457 aa18.25■□□□□ 0.51
HCFC1-201ENST00000310441 BRPF1P55201 1214 aaPredicted RBP18.25■□□□□ 0.51
HCFC1-201ENST00000310441 DHX57Q6P158 1386 aaKnown RBP18.25■□□□□ 0.51
HCFC1-201ENST00000310441 KIF21BO75037 1637 aa18.25■□□□□ 0.51
HCFC1-201ENST00000310441 HNRNPMP52272 730 aaKnown RBP eCLIP18.25■□□□□ 0.512e-7■□□□□ 8.3
HCFC1-201ENST00000310441 FOSBP53539 338 aa18.25■□□□□ 0.51
HCFC1-201ENST00000310441 MYOM3Q5VTT5 1437 aa18.24■□□□□ 0.51
HCFC1-201ENST00000310441 TAX1BP1Q86VP1 789 aa18.24■□□□□ 0.51
HCFC1-201ENST00000310441 SHTN1A0MZ66 631 aa18.24■□□□□ 0.51
HCFC1-201ENST00000310441 WASF1Q92558 559 aa18.24■□□□□ 0.51
HCFC1-201ENST00000310441 LNPKQ9C0E8 428 aa18.24■□□□□ 0.51
HCFC1-201ENST00000310441 CCDC57Q2TAC2 916 aa18.24■□□□□ 0.51
HCFC1-201ENST00000310441 GIMAP7Q8NHV1 300 aa18.24■□□□□ 0.51
HCFC1-201ENST00000310441 CYP46A1Q9Y6A2 500 aa18.24■□□□□ 0.51
HCFC1-201ENST00000310441 APAF1O14727 1248 aa18.23■□□□□ 0.51
HCFC1-201ENST00000310441 CEP131Q9UPN4 1083 aa18.23■□□□□ 0.51
HCFC1-201ENST00000310441 SKIDA1Q1XH10 827 aa18.22■□□□□ 0.51
HCFC1-201ENST00000310441 CCDC158Q5M9N0 1113 aa18.22■□□□□ 0.51
HCFC1-201ENST00000310441 MICALCLQ6ZW33 695 aa18.22■□□□□ 0.51
HCFC1-201ENST00000310441 CEP57L1Q8IYX8 460 aa18.22■□□□□ 0.51
HCFC1-201ENST00000310441 CRACR2AQ9BSW2 395 aa18.22■□□□□ 0.51
HCFC1-201ENST00000310441 VPS36Q86VN1 386 aa18.22■□□□□ 0.51
HCFC1-201ENST00000310441 ME1P48163 572 aa18.22■□□□□ 0.51
HCFC1-201ENST00000310441 KANK4Q5T7N3 995 aaPredicted RBP18.21■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms