RNA–Protein interactions for RNA: ENST00000308537.4

PDZRN3-202, Transcript of PDZ domain containing ring finger 3, humanhuman

TSL 1 (best) BASIC

Gene PDZRN3, Length 1,136 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDZRN3-202ENST00000308537 NRAPQ86VF7 1730 aa28.46■■■□□ 2.15
PDZRN3-202ENST00000308537 RALGAPBQ86X10 1494 aa28.46■■■□□ 2.15
PDZRN3-202ENST00000308537 UNC5CLQ8IV45 518 aa28.45■■■□□ 2.14
PDZRN3-202ENST00000308537 UPF1Q92900 1129 aaKnown RBP eCLIP28.45■■■□□ 2.14
PDZRN3-202ENST00000308537 CABP2Q9NPB3 220 aa28.45■■■□□ 2.14
PDZRN3-202ENST00000308537 PPIP5K1Q6PFW1 1433 aa28.43■■■□□ 2.14
PDZRN3-202ENST00000308537 PHRF1Q9P1Y6 1649 aaKnown RBP28.43■■■□□ 2.14
PDZRN3-202ENST00000308537 PLEKHG5O94827 1062 aa28.42■■■□□ 2.14
PDZRN3-202ENST00000308537 TONSLQ96HA7 1378 aa28.41■■■□□ 2.14
PDZRN3-202ENST00000308537 FAM83GA6ND36 823 aa28.41■■■□□ 2.14
PDZRN3-202ENST00000308537 GJD4Q96KN9 370 aaPredicted RBP28.41■■■□□ 2.14
PDZRN3-202ENST00000308537 SRPK2P78362 688 aaKnown RBP28.4■■■□□ 2.14
PDZRN3-202ENST00000308537 COL14A1Q05707 1796 aaKnown RBP28.39■■■□□ 2.14
PDZRN3-202ENST00000308537 EP400Q96L91 3159 aa28.38■■■□□ 2.13
PDZRN3-202ENST00000308537 SBNO2Q9Y2G9 1366 aa28.37■■■□□ 2.13
PDZRN3-202ENST00000308537 PAK3O75914 559 aaPredicted RBP28.37■■■□□ 2.13
PDZRN3-202ENST00000308537 HAP1P54257 671 aaPredicted RBP28.37■■■□□ 2.13
PDZRN3-202ENST00000308537 SSH2Q76I76 1423 aa28.35■■■□□ 2.13
PDZRN3-202ENST00000308537 NRKQ7Z2Y5 1582 aa28.34■■■□□ 2.13
PDZRN3-202ENST00000308537 VPS72Q15906 364 aa28.34■■■□□ 2.13
PDZRN3-202ENST00000308537 EVC2Q86UK5 1308 aa28.34■■■□□ 2.13
PDZRN3-202ENST00000308537 CABP1Q9NZU7 370 aa28.33■■■□□ 2.13
PDZRN3-202ENST00000308537 BRWD3Q6RI45 1802 aa28.33■■■□□ 2.13
PDZRN3-202ENST00000308537 USP6P35125 1406 aa28.33■■■□□ 2.13
PDZRN3-202ENST00000308537 AKAP12Q02952 1782 aa28.32■■■□□ 2.12
PDZRN3-202ENST00000308537 CARD11Q9BXL7 1154 aa28.31■■■□□ 2.12
PDZRN3-202ENST00000308537 USP19O94966 1318 aa28.31■■■□□ 2.12
PDZRN3-202ENST00000308537 BRD4O60885 1362 aaPredicted RBP28.3■■■□□ 2.12
PDZRN3-202ENST00000308537 NUTM2GQ5VZR2 741 aa28.3■■■□□ 2.12
PDZRN3-202ENST00000308537 KIAA0232Q92628 1395 aa28.28■■■□□ 2.12
PDZRN3-202ENST00000308537 BTG4Q9NY30 223 aa28.28■■■□□ 2.12
PDZRN3-202ENST00000308537 PIK3C2AO00443 1686 aa28.28■■■□□ 2.12
PDZRN3-202ENST00000308537 ONECUT3O60422 494 aaPredicted RBP28.27■■■□□ 2.12
PDZRN3-202ENST00000308537 CPSF1Q10570 1443 aaKnown RBP28.26■■■□□ 2.11
PDZRN3-202ENST00000308537 LMO7Q8WWI1 1683 aa28.26■■■□□ 2.11
PDZRN3-202ENST00000308537 ATAD2Q6PL18 1390 aa28.25■■■□□ 2.11
PDZRN3-202ENST00000308537 ABTB2Q8N961 1025 aa28.25■■■□□ 2.11
PDZRN3-202ENST00000308537 SLIT3O75094 1523 aa28.23■■■□□ 2.11
PDZRN3-202ENST00000308537 PRDM11Q9NQV5 511 aa28.23■■■□□ 2.11
PDZRN3-202ENST00000308537 CD163L1Q9NR16 1453 aa28.22■■■□□ 2.11
PDZRN3-202ENST00000308537 MON2Q7Z3U7 1717 aa28.22■■■□□ 2.11
PDZRN3-202ENST00000308537 CPDO75976 1380 aa28.22■■■□□ 2.11
PDZRN3-202ENST00000308537 CAMTA1Q9Y6Y1 1673 aa28.2■■■□□ 2.11
PDZRN3-202ENST00000308537 ZC3H6P61129 1189 aaKnown RBP28.2■■■□□ 2.1
PDZRN3-202ENST00000308537 CHRNA2Q15822 529 aa28.2■■■□□ 2.1
PDZRN3-202ENST00000308537 SEPT12Q8IYM1 358 aa28.19■■■□□ 2.1
PDZRN3-202ENST00000308537 TESK2Q96S53 571 aa28.19■■■□□ 2.1
PDZRN3-202ENST00000308537 THSD7AQ9UPZ6 1657 aa28.19■■■□□ 2.1
PDZRN3-202ENST00000308537 SPATA31A5Q5VU36 1347 aa28.18■■■□□ 2.1
PDZRN3-202ENST00000308537 SPATA31A7Q8IWB4 1347 aa28.18■■■□□ 2.1
PDZRN3-202ENST00000308537 NLRP13Q86W25 1043 aa28.17■■■□□ 2.1
PDZRN3-202ENST00000308537 GCP02774 474 aa28.16■■■□□ 2.1
PDZRN3-202ENST00000308537 TTC21BQ7Z4L5 1316 aa28.16■■■□□ 2.1
PDZRN3-202ENST00000308537 COL18A1P39060 1754 aa28.15■■■□□ 2.1
PDZRN3-202ENST00000308537 ZNF692Q9BU19 519 aaPredicted RBP28.14■■■□□ 2.1
PDZRN3-202ENST00000308537 CCDC9Q9Y3X0 531 aaKnown RBP28.14■■■□□ 2.1
PDZRN3-202ENST00000308537 CLSPNQ9HAW4 1339 aa28.14■■■□□ 2.09
PDZRN3-202ENST00000308537 USP54Q70EL1 1684 aa28.13■■■□□ 2.09
PDZRN3-202ENST00000308537 FAM98CQ17RN3 349 aaKnown RBP28.12■■■□□ 2.09
PDZRN3-202ENST00000308537 PCGF6Q9BYE7 350 aa28.12■■■□□ 2.09
PDZRN3-202ENST00000308537 ST20-MTHFSA0A0A6YYL1 179 aa28.11■■■□□ 2.09
PDZRN3-202ENST00000308537 NLRP6P59044 892 aa28.11■■■□□ 2.09
PDZRN3-202ENST00000308537 SPATA31A1Q5TZJ5 1347 aa28.11■■■□□ 2.09
PDZRN3-202ENST00000308537 PUS7Q96PZ0 661 aaKnown RBP28.1■■■□□ 2.09
PDZRN3-202ENST00000308537 KTN1Q86UP2 1357 aaKnown RBP28.1■■■□□ 2.09
PDZRN3-202ENST00000308537 COL5A2P05997 1499 aaPredicted RBP28.08■■■□□ 2.09
PDZRN3-202ENST00000308537 TTC21AQ8NDW8 1320 aa28.08■■■□□ 2.09
PDZRN3-202ENST00000308537 NFAT5O94916 1531 aa28.08■■■□□ 2.08
PDZRN3-202ENST00000308537 SLC12A5Q9H2X9 1139 aa28.07■■■□□ 2.08
PDZRN3-202ENST00000308537 TIMELESSQ9UNS1 1208 aa28.06■■■□□ 2.08
PDZRN3-202ENST00000308537 AATKQ6ZMQ8 1374 aa28.05■■■□□ 2.08
PDZRN3-202ENST00000308537 KRT27Q7Z3Y8 459 aa28.05■■■□□ 2.08
PDZRN3-202ENST00000308537 USP47Q96K76 1375 aa28.05■■■□□ 2.08
PDZRN3-202ENST00000308537 STRN4Q9NRL3 753 aa28.05■■■□□ 2.08
PDZRN3-202ENST00000308537 A0A1W2PP64 1363 aa28.04■■■□□ 2.08
PDZRN3-202ENST00000308537 USP31Q70CQ4 1352 aa28.04■■■□□ 2.08
PDZRN3-202ENST00000308537 BLMP54132 1417 aaPredicted RBP28.03■■■□□ 2.08
PDZRN3-202ENST00000308537 LARP1Q6PKG0 1096 aaKnown RBP28.03■■■□□ 2.08
PDZRN3-202ENST00000308537 CCDC125Q86Z20 511 aa28.02■■■□□ 2.08
PDZRN3-202ENST00000308537 ZRANB1Q9UGI0 708 aa28.02■■■□□ 2.08
PDZRN3-202ENST00000308537 RGPD5Q99666 1765 aa28.01■■■□□ 2.08
PDZRN3-202ENST00000308537 ARHGEF25Q86VW2 580 aa28.01■■■□□ 2.07
PDZRN3-202ENST00000308537 EDC4Q6P2E9 1401 aaKnown RBP28■■■□□ 2.07
PDZRN3-202ENST00000308537 TMC1Q8TDI8 760 aa27.99■■■□□ 2.07
PDZRN3-202ENST00000308537 AXIN2Q9Y2T1 843 aa27.99■■■□□ 2.07
PDZRN3-202ENST00000308537 BARGINQ6ZT62 677 aa27.98■■■□□ 2.07
PDZRN3-202ENST00000308537 NME9Q86XW9 330 aa27.97■■■□□ 2.07
PDZRN3-202ENST00000308537 NINLQ9Y2I6 1382 aa27.97■■■□□ 2.07
PDZRN3-202ENST00000308537 SUGP2Q8IX01 1082 aaKnown RBP eCLIP27.96■■■□□ 2.07
PDZRN3-202ENST00000308537 PARP4Q9UKK3 1724 aaKnown RBP27.95■■■□□ 2.07
PDZRN3-202ENST00000308537 OVOS2A0A0J9YW53 1432 aa27.95■■■□□ 2.07
PDZRN3-202ENST00000308537 CRB1P82279 1406 aa27.95■■■□□ 2.07
PDZRN3-202ENST00000308537 OVOS2Q6IE36 1432 aa27.95■■■□□ 2.07
PDZRN3-202ENST00000308537 EVA1CP58658 441 aa27.95■■■□□ 2.06
PDZRN3-202ENST00000308537 KCNH5Q8NCM2 988 aa27.95■■■□□ 2.06
PDZRN3-202ENST00000308537 ABCC6O95255 1503 aa27.94■■■□□ 2.06
PDZRN3-202ENST00000308537 A0A0G2JS52 829 aa27.94■■■□□ 2.06
PDZRN3-202ENST00000308537 MYT1Q01538 1121 aa27.94■■■□□ 2.06
PDZRN3-202ENST00000308537 FAM182BQ5T319 152 aa27.94■■■□□ 2.06
PDZRN3-202ENST00000308537 USP35Q9P2H5 1018 aa27.94■■■□□ 2.06
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms