RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 TOP2BQ02880 1626 aa20.76■□□□□ 0.91
SYNPO-201ENST00000307662 DHX8Q14562 1220 aaKnown RBP20.76■□□□□ 0.91
SYNPO-201ENST00000307662 DCTN1Q14203 1278 aa20.75■□□□□ 0.91
SYNPO-201ENST00000307662 EXOSC9Q06265 439 aaKnown RBP20.75■□□□□ 0.91
SYNPO-201ENST00000307662 AMOTL1Q8IY63 956 aa20.75■□□□□ 0.91
SYNPO-201ENST00000307662 WDR33Q9C0J8 1336 aaKnown RBP20.74■□□□□ 0.91
SYNPO-201ENST00000307662 MTHFSP49914 203 aa20.74■□□□□ 0.91
SYNPO-201ENST00000307662 EHBP1L1Q8N3D4 1523 aa20.74■□□□□ 0.91
SYNPO-201ENST00000307662 GNAI3P08754 354 aa20.73■□□□□ 0.91
SYNPO-201ENST00000307662 ZSCAN30Q86W11 494 aa20.73■□□□□ 0.91
SYNPO-201ENST00000307662 HFM1A2PYH4 1435 aa20.72■□□□□ 0.91
SYNPO-201ENST00000307662 CCDC191Q8NCU4 936 aa20.72■□□□□ 0.91
SYNPO-201ENST00000307662 GGNBP2Q9H3C7 697 aa20.72■□□□□ 0.91
SYNPO-201ENST00000307662 TTLL5Q6EMB2 1281 aa20.72■□□□□ 0.91
SYNPO-201ENST00000307662 ZNF396Q96N95 335 aaPredicted RBP20.72■□□□□ 0.91
SYNPO-201ENST00000307662 FSD1Q9BTV5 496 aa20.72■□□□□ 0.91
SYNPO-201ENST00000307662 CYB5RLQ6IPT4 315 aa20.71■□□□□ 0.91
SYNPO-201ENST00000307662 NOB1Q9ULX3 412 aaKnown RBP20.71■□□□□ 0.91
SYNPO-201ENST00000307662 SMARCE1Q969G3 411 aa20.71■□□□□ 0.91
SYNPO-201ENST00000307662 AEBP1Q8IUX7 1158 aa20.71■□□□□ 0.91
SYNPO-201ENST00000307662 FMNL2Q96PY5 1086 aa20.71■□□□□ 0.91
SYNPO-201ENST00000307662 C1orf115Q9H7X2 142 aa20.71■□□□□ 0.91
SYNPO-201ENST00000307662 CLASRPQ8N2M8 674 aaKnown RBP20.7■□□□□ 0.9
SYNPO-201ENST00000307662 SYNJ2O15056 1496 aa20.7■□□□□ 0.9
SYNPO-201ENST00000307662 KIAA1107Q9UPP5 1409 aa20.7■□□□□ 0.9
SYNPO-201ENST00000307662 ARHGAP5Q13017 1502 aa20.7■□□□□ 0.9
SYNPO-201ENST00000307662 NOL10Q9BSC4 688 aaKnown RBP20.69■□□□□ 0.9
SYNPO-201ENST00000307662 TNMDQ9H2S6 317 aa20.69■□□□□ 0.9
SYNPO-201ENST00000307662 HIP1O00291 1037 aa20.69■□□□□ 0.9
SYNPO-201ENST00000307662 MPNDQ8N594 471 aa20.69■□□□□ 0.9
SYNPO-201ENST00000307662 FILIP1LQ4L180 1135 aa20.69■□□□□ 0.9
SYNPO-201ENST00000307662 TIAM1Q13009 1591 aa20.69■□□□□ 0.9
SYNPO-201ENST00000307662 SURF6O75683 361 aaKnown RBP20.68■□□□□ 0.9
SYNPO-201ENST00000307662 BRMS1Q9HCU9 246 aa20.68■□□□□ 0.9
SYNPO-201ENST00000307662 MVPQ14764 893 aaKnown RBP20.68■□□□□ 0.9
SYNPO-201ENST00000307662 WASHC4Q2M389 1173 aa20.68■□□□□ 0.9
SYNPO-201ENST00000307662 AXDND1Q5T1B0 1012 aaPredicted RBP20.68■□□□□ 0.9
SYNPO-201ENST00000307662 NEUROD6Q96NK8 337 aa20.68■□□□□ 0.9
SYNPO-201ENST00000307662 CT47B1P0C2W7 299 aaPredicted RBP20.67■□□□□ 0.9
SYNPO-201ENST00000307662 PODXL2Q9NZ53 605 aa20.67■□□□□ 0.9
SYNPO-201ENST00000307662 NBPF8Q3BBV2 869 aa20.67■□□□□ 0.9
SYNPO-201ENST00000307662 DHX16O60231 1041 aaKnown RBP20.66■□□□□ 0.9
SYNPO-201ENST00000307662 XBP1P17861 261 aa20.66■□□□□ 0.9
SYNPO-201ENST00000307662 AFAP1Q8N556 730 aa20.66■□□□□ 0.9
SYNPO-201ENST00000307662 TSPYL1Q9H0U9 437 aa20.66■□□□□ 0.9
SYNPO-201ENST00000307662 SCAPERQ9BY12 1400 aa20.66■□□□□ 0.9
SYNPO-201ENST00000307662 CFAP70Q5T0N1 1121 aa20.66■□□□□ 0.9
SYNPO-201ENST00000307662 STK38Q15208 465 aa20.65■□□□□ 0.9
SYNPO-201ENST00000307662 TWISTNBQ3B726 338 aaPredicted RBP20.65■□□□□ 0.9
SYNPO-201ENST00000307662 CCDC184Q52MB2 194 aa20.65■□□□□ 0.9
SYNPO-201ENST00000307662 CHD1LQ86WJ1 897 aa20.65■□□□□ 0.9
SYNPO-201ENST00000307662 KRT85P78386 507 aa20.65■□□□□ 0.9
SYNPO-201ENST00000307662 TAF3Q5VWG9 929 aa20.65■□□□□ 0.9
SYNPO-201ENST00000307662 CABP2Q9NPB3 220 aa20.65■□□□□ 0.9
SYNPO-201ENST00000307662 OFD1O75665 1012 aa20.65■□□□□ 0.9
SYNPO-201ENST00000307662 TMEM132EQ6IEE7 984 aa20.65■□□□□ 0.9
SYNPO-201ENST00000307662 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.65■□□□□ 0.9
SYNPO-201ENST00000307662 PDCL2Q8N4E4 241 aa20.65■□□□□ 0.9
SYNPO-201ENST00000307662 WDR63Q8IWG1 891 aa20.64■□□□□ 0.9
SYNPO-201ENST00000307662 CYP46A1Q9Y6A2 500 aa20.64■□□□□ 0.9
SYNPO-201ENST00000307662 C9orf84Q5VXU9 1444 aa20.64■□□□□ 0.9
SYNPO-201ENST00000307662 WWC1Q8IX03 1113 aa20.64■□□□□ 0.89
SYNPO-201ENST00000307662 SERPINC1P01008 464 aa20.64■□□□□ 0.89
SYNPO-201ENST00000307662 RIC3Q7Z5B4 369 aa20.64■□□□□ 0.89
SYNPO-201ENST00000307662 MYO6Q9UM54 1294 aa20.64■□□□□ 0.89
SYNPO-201ENST00000307662 HMGXB3Q12766 1538 aa20.64■□□□□ 0.89
SYNPO-201ENST00000307662 CCDC30Q5VVM6 783 aa20.64■□□□□ 0.89
SYNPO-201ENST00000307662 GNAI2P04899 355 aa20.63■□□□□ 0.89
SYNPO-201ENST00000307662 NBPF1Q3BBV0 1214 aa20.63■□□□□ 0.89
SYNPO-201ENST00000307662 TSR2Q969E8 191 aaKnown RBP20.63■□□□□ 0.89
SYNPO-201ENST00000307662 TOPBP1Q92547 1522 aa20.63■□□□□ 0.89
SYNPO-201ENST00000307662 ERLIN1O75477 346 aa20.63■□□□□ 0.89
SYNPO-201ENST00000307662 CEBPZQ03701 1054 aaKnown RBP20.63■□□□□ 0.89
SYNPO-201ENST00000307662 ATF7IPQ6VMQ6 1270 aa20.63■□□□□ 0.89
SYNPO-201ENST00000307662 TROQ12816 1431 aaPredicted RBP20.63■□□□□ 0.89
SYNPO-201ENST00000307662 EIF3JO75822 258 aaKnown RBP20.62■□□□□ 0.89
SYNPO-201ENST00000307662 TCEAL9Q9UHQ7 104 aa20.62■□□□□ 0.89
SYNPO-201ENST00000307662 ANKRD1Q15327 319 aa20.62■□□□□ 0.89
SYNPO-201ENST00000307662 PRG4Q92954 1404 aaPredicted RBP20.61■□□□□ 0.89
SYNPO-201ENST00000307662 EPS15P42566 896 aa20.61■□□□□ 0.89
SYNPO-201ENST00000307662 PIP4K2AP48426 406 aaPredicted RBP20.61■□□□□ 0.89
SYNPO-201ENST00000307662 CT47A1Q5JQC4 288 aaPredicted RBP20.61■□□□□ 0.89
SYNPO-201ENST00000307662 VPS37DQ86XT2 251 aa20.61■□□□□ 0.89
SYNPO-201ENST00000307662 POLA1P09884 1462 aaPredicted RBP20.61■□□□□ 0.89
SYNPO-201ENST00000307662 PRKAR2BP31323 418 aa20.61■□□□□ 0.89
SYNPO-201ENST00000307662 RAD21O60216 631 aa20.6■□□□□ 0.89
SYNPO-201ENST00000307662 ERC1Q8IUD2 1116 aa20.6■□□□□ 0.89
SYNPO-201ENST00000307662 JMYQ8N9B5 988 aa20.6■□□□□ 0.89
SYNPO-201ENST00000307662 KIAA0754O94854 1291 aa20.59■□□□□ 0.89
SYNPO-201ENST00000307662 PLEKHH2Q8IVE3 1493 aa20.59■□□□□ 0.89
SYNPO-201ENST00000307662 IFT140Q96RY7 1462 aa20.59■□□□□ 0.89
SYNPO-201ENST00000307662 BRPF1P55201 1214 aaPredicted RBP20.59■□□□□ 0.89
SYNPO-201ENST00000307662 FAM69CQ0P6D2 419 aa20.59■□□□□ 0.89
SYNPO-201ENST00000307662 AIMP1Q12904 312 aaKnown RBP20.59■□□□□ 0.89
SYNPO-201ENST00000307662 LRRCC1Q9C099 1032 aa20.59■□□□□ 0.89
SYNPO-201ENST00000307662 MAGEC2Q9UBF1 373 aaPredicted RBP20.59■□□□□ 0.89
SYNPO-201ENST00000307662 NESP48681 1621 aa20.58■□□□□ 0.89
SYNPO-201ENST00000307662 HECW1Q76N89 1606 aa20.58■□□□□ 0.89
SYNPO-201ENST00000307662 SYCE3A1L190 88 aa20.58■□□□□ 0.89
SYNPO-201ENST00000307662 CBFA2T2O43439 604 aa20.58■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 71.9 ms